When to Trust Tools? Adaptive Tool Trust Calibration For Tool-Integrated Math Reasoning

Large reasoning models (LRMs) have achieved strong performance enhancement through scaling test time computation, but due to the inherent limitations of the underlying language models, they still have shortcomings in tasks that require precise computation and extensive knowledge reserves. Tool-Integrated Reasoning (TIR) has emerged as a promising paradigm that incorporates tool call and execution within the reasoning trajectory. Although recent works have released some powerful open-source TIR models, our analysis reveals that these models still suffer from critical deficiencies. We find that when the reasoning of the model conflicts with the tool results, the model tends to believe in its own reasoning. And there are cases where the tool results are correct but are ignored by the model, resulting in incorrect answers, which we define as "Tool Ignored''. This indicates that the model does not know when to trust or ignore the tool. To overcome these limitations, We introduce Adaptive Tool Trust Calibration (ATTC), a novel framework that guides the model to adaptively choose to trust or ignore the tool results based on the confidence score of generated code blocks. The experimental results from various open-source TIR models of different sizes and across multiple datasets demonstrate that ATTC effectively reduces the "Tool Ignored" issue, resulting in a performance increase of 4.1% to 7.5%.

3DCity-LLM: Empowering Multi-modality Large Language Models for 3D City-scale Perception and Understanding

While multi-modality large language models excel in object-centric or indoor scenarios, scaling them to 3D city-scale environments remains a formidable challenge. To bridge this gap, we propose 3DCity-LLM, a unified framework designed for 3D city-scale vision-language perception and understanding. 3DCity-LLM employs a coarse-to-fine feature encoding strategy comprising three parallel branches for target object, inter-object relationship, and global scene. To facilitate large-scale training, we introduce 3DCity-LLM-1.2M dataset that comprises approximately 1.2 million high-quality samples across seven representative task categories, ranging from fine-grained object analysis to multi-faceted scene planning. This strictly quality-controlled dataset integrates explicit 3D numerical information and diverse user-oriented simulations, enriching the question-answering diversity and realism of urban scenarios. Furthermore, we apply a multi-dimensional protocol based on text-similarity metrics and LLM-based semantic assessment to ensure faithful and comprehensive evaluations for all methods. Extensive experiments on two benchmarks demonstrate that 3DCity-LLM significantly outperforms existing state-of-the-art methods, offering a promising and meaningful direction for advancing spatial reasoning and urban intelligence. The source code and dataset are available at https://github.com/SYSU-3DSTAILab/3D-City-LLM.

DualWeaver: Synergistic Feature Weaving Surrogates for Multivariate Forecasting with Univariate Time Series Foundation Models

Time-series foundation models (TSFMs) have achieved strong univariate forecasting through large-scale pre-training, yet effectively extending this success to multivariate forecasting remains challenging. To address this, we propose DualWeaver, a novel framework that adapts univariate TSFMs (Uni-TSFMs) for multivariate forecasting by using a pair of learnable, structurally symmetric surrogate series. Generated by a shared auxiliary feature-fusion module that captures cross-variable dependencies, these surrogates are mapped to TSFM-compatible series via the forecasting objective. The symmetric structure enables parameter-free reconstruction of final predictions directly from the surrogates, without additional parametric decoding. A theoretically grounded regularization term is further introduced to enhance robustness against adaptation collapse. Extensive experiments on diverse real-world datasets show that DualWeaver outperforms state-of-the-art multivariate forecasters in both accuracy and stability. We release the code at https://github.com/li-jinpeng/DualWeaver.

Teaching Large Reasoning Models Effective Reflection

Large Reasoning Models (LRMs) have recently shown impressive performance on complex reasoning tasks, often by engaging in self-reflective behaviors such as self-critique and backtracking. However, not all reflections are beneficial-many are superficial, offering little to no improvement over the original answer and incurring computation overhead. In this paper, we identify and address the problem of superficial reflection in LRMs. We first propose Self-Critique Fine-Tuning (SCFT), a training framework that enhances the model's reflective reasoning ability using only self-generated critiques. SCFT prompts models to critique their own outputs, filters high-quality critiques through rejection sampling, and fine-tunes the model using a critique-based objective. Building on this strong foundation, we further introduce Reinforcement Learning with Effective Reflection Rewards (RLERR). RLERR leverages the high-quality reflections initialized by SCFT to construct reward signals, guiding the model to internalize the self-correction process via reinforcement learning. Experiments on two challenging benchmarks, AIME2024 and AIME2025, show that SCFT and RLERR significantly improve both reasoning accuracy and reflection quality, outperforming state-of-the-art baselines. All data and codes are available at https://github.com/wanghanbinpanda/SCFT.

Group Pattern Selection Optimization: Let LRMs Pick the Right Pattern for Reasoning

Large reasoning models (LRMs) exhibit diverse high-level reasoning patterns (e.g., direct solution, reflection-and-verification, and exploring multiple solutions), yet prevailing training recipes implicitly bias models toward a limited set of dominant patterns. Through a systematic analysis, we identify substantial accuracy variance across these patterns on mathematics and science benchmarks, revealing that a model's default reasoning pattern is often sub-optimal for a given problem. To address this, we introduce Group Pattern Selection Optimization (GPSO), a reinforcement learning framework that extends GRPO by incorporating multi-pattern rollouts, verifier-guided optimal pattern selection per problem, and attention masking during optimization to prevent the leakage of explicit pattern suffixes into the learned policy. By exploring a portfolio of diverse reasoning strategies and optimizing the policy on the most effective ones, GPSO enables the model to internalize the mapping from problem characteristics to optimal reasoning patterns. Extensive experiments demonstrate that GPSO delivers consistent and substantial performance gains across various model backbones and benchmarks, effectively mitigating pattern sub-optimality and fostering more robust, adaptable reasoning. All data and codes are available at https://github.com/wanghanbinpanda/GPSO.

Perceive and Calibrate: Analyzing and Enhancing Robustness of Medical Multi-Modal Large Language Models

Medical Multi-modal Large Language Models (MLLMs) have shown promising clinical performance. However, their sensitivity to real-world input perturbations, such as imaging artifacts and textual errors, critically undermines their clinical applicability. Systematic analysis of such noise impact on medical MLLMs remains largely unexplored. Furthermore, while several works have investigated the MLLMs' robustness in general domains, they primarily focus on text modality and rely on costly fine-tuning. They are inadequate to address the complex noise patterns and fulfill the strict safety standards in medicine. To bridge this gap, this work systematically analyzes the impact of various perturbations on medical MLLMs across both visual and textual modalities. Building on our findings, we introduce a training-free Inherent-enhanced Multi-modal Calibration (IMC) framework that leverages MLLMs' inherent denoising capabilities following the perceive-and-calibrate principle for cross-modal robustness enhancement. For the visual modality, we propose a Perturbation-aware Denoising Calibration (PDC) which leverages MLLMs' own vision encoder to identify noise patterns and perform prototype-guided feature calibration. For text denoising, we design a Self-instantiated Multi-agent System (SMS) that exploits the MLLMs' self-assessment capabilities to refine noisy text through a cooperative hierarchy of agents. We construct a benchmark containing 11 types of noise across both image and text modalities on 2 datasets. Experimental results demonstrate our method achieves the state-of-the-art performance across multiple modalities, showing potential to enhance MLLMs' robustness in real clinical scenarios.

Boosting In-Silicon Directed Evolution with Fine-Tuned Protein Language Model and Tree Search

Protein evolution through amino acid sequence mutations is a cornerstone of life sciences. While current in-silicon directed evolution algorithms largely focus on designing heuristic search strategies, they overlook how to integrate the transformative protein language models, which encode rich evolutionary patterns, with reinforcement learning to learn to directly evolve proteins. To bridge this gap, we propose AlphaDE, a novel framework to optimize protein sequences by harnessing the innovative paradigms of large language models such as fine-tuning and test-time inference. First, AlphaDE fine-tunes pretrained protein language models using masked language modeling on homologous protein sequences to activate the evolutionary plausibility for the interested protein class. Second, AlphaDE introduces test-time inference based on Monte Carlo tree search, which effectively evolves proteins with evolutionary guidance from the fine-tuned protein language model. Extensive benchmark experiments show that AlphaDE remarkably outperforms previous state-of-the-art methods even with few-shot fine-tuning. A further case study demonstrates that AlphaDE supports condensing the protein sequence space of avGFP through computational evolution.

MEJO: MLLM-Engaged Surgical Triplet Recognition via Inter- and Intra-Task Joint Optimization

Surgical triplet recognition, which involves identifying instrument, verb, target, and their combinations, is a complex surgical scene understanding challenge plagued by long-tailed data distribution. The mainstream multi-task learning paradigm benefiting from cross-task collaborative promotion has shown promising performance in identifying triples, but two key challenges remain: 1) inter-task optimization conflicts caused by entangling task-generic and task-specific representations; 2) intra-task optimization conflicts due to class-imbalanced training data. To overcome these difficulties, we propose the MLLM-Engaged Joint Optimization (MEJO) framework that empowers both inter- and intra-task optimization for surgical triplet recognition. For inter-task optimization, we introduce the Shared-Specific-Disentangled (S$^2$D) learning scheme that decomposes representations into task-shared and task-specific components. To enhance task-shared representations, we construct a Multimodal Large Language Model (MLLM) powered probabilistic prompt pool to dynamically augment visual features with expert-level semantic cues. Additionally, comprehensive task-specific cues are modeled via distinct task prompts covering the temporal-spatial dimensions, effectively mitigating inter-task ambiguities. To tackle intra-task optimization conflicts, we develop a Coordinated Gradient Learning (CGL) strategy, which dissects and rebalances the positive-negative gradients originating from head and tail classes for more coordinated learning behaviors. Extensive experiments on the CholecT45 and CholecT50 datasets demonstrate the superiority of our proposed framework, validating its effectiveness in handling optimization conflicts.

Fast, Slow, and Tool-augmented Thinking for LLMs: A Review

Large Language Models (LLMs) have demonstrated remarkable progress in reasoning across diverse domains. However, effective reasoning in real-world tasks requires adapting the reasoning strategy to the demands of the problem, ranging from fast, intuitive responses to deliberate, step-by-step reasoning and tool-augmented thinking. Drawing inspiration from cognitive psychology, we propose a novel taxonomy of LLM reasoning strategies along two knowledge boundaries: a fast/slow boundary separating intuitive from deliberative processes, and an internal/external boundary distinguishing reasoning grounded in the model's parameters from reasoning augmented by external tools. We systematically survey recent work on adaptive reasoning in LLMs and categorize methods based on key decision factors. We conclude by highlighting open challenges and future directions toward more adaptive, efficient, and reliable LLMs.

From Learning to Unlearning: Biomedical Security Protection in Multimodal Large Language Models

The security of biomedical Multimodal Large Language Models (MLLMs) has attracted increasing attention. However, training samples easily contain private information and incorrect knowledge that are difficult to detect, potentially leading to privacy leakage or erroneous outputs after deployment. An intuitive idea is to reprocess the training set to remove unwanted content and retrain the model from scratch. Yet, this is impractical due to significant computational costs, especially for large language models. Machine unlearning has emerged as a solution to this problem, which avoids complete retraining by selectively removing undesired knowledge derived from harmful samples while preserving required capabilities on normal cases. However, there exist no available datasets to evaluate the unlearning quality for security protection in biomedical MLLMs. To bridge this gap, we propose the first benchmark Multimodal Large Language Model Unlearning for BioMedicine (MLLMU-Med) built upon our novel data generation pipeline that effectively integrates synthetic private data and factual errors into the training set. Our benchmark targets two key scenarios: 1) Privacy protection, where patient private information is mistakenly included in the training set, causing models to unintentionally respond with private data during inference; and 2) Incorrectness removal, where wrong knowledge derived from unreliable sources is embedded into the dataset, leading to unsafe model responses. Moreover, we propose a novel Unlearning Efficiency Score that directly reflects the overall unlearning performance across different subsets. We evaluate five unlearning approaches on MLLMU-Med and find that these methods show limited effectiveness in removing harmful knowledge from biomedical MLLMs, indicating significant room for improvement. This work establishes a new pathway for further research in this promising field.