Jina Embeddings 2: 8192-Token General-Purpose Text Embeddings for Long Documents

Text embedding models have emerged as powerful tools for transforming sentences into fixed-sized feature vectors that encapsulate semantic information. While these models are essential for tasks like information retrieval, semantic clustering, and text re-ranking, most existing open-source models, especially those built on architectures like BERT, struggle to represent lengthy documents and often resort to truncation. One common approach to mitigate this challenge involves splitting documents into smaller paragraphs for embedding. However, this strategy results in a much larger set of vectors, consequently leading to increased memory consumption and computationally intensive vector searches with elevated latency. To address these challenges, we introduce Jina Embeddings 2, an open-source text embedding model capable of accommodating up to 8192 tokens. This model is designed to transcend the conventional 512-token limit and adeptly process long documents. Jina Embeddings 2 not only achieves state-of-the-art performance on a range of embedding-related tasks in the MTEB benchmark but also matches the performance of OpenAI's proprietary ada-002 model. Additionally, our experiments indicate that an extended context can enhance performance in tasks such as NarrativeQA.

Splicing Up Your Predictions with RNA Contrastive Learning

In the face of rapidly accumulating genomic data, our understanding of the RNA regulatory code remains incomplete. Recent self-supervised methods in other domains have demonstrated the ability to learn rules underlying the data-generating process such as sentence structure in language. Inspired by this, we extend contrastive learning techniques to genomic data by utilizing functional similarities between sequences generated through alternative splicing and gene duplication. Our novel dataset and contrastive objective enable the learning of generalized RNA isoform representations. We validate their utility on downstream tasks such as RNA half-life and mean ribosome load prediction. Our pre-training strategy yields competitive results using linear probing on both tasks, along with up to a two-fold increase in Pearson correlation in low-data conditions. Importantly, our exploration of the learned latent space reveals that our contrastive objective yields semantically meaningful representations, underscoring its potential as a valuable initialization technique for RNA property prediction.

Lightweight Full-Convolutional Siamese Tracker

Although single object trackers have achieved advanced performance, their large-scale models make it difficult to apply them on the platforms with limited resources. Moreover, existing lightweight trackers only achieve balance between 2-3 points in terms of parameters, performance, Flops and FPS. To achieve the optimal balance among these points, this paper propose a lightweight full-convolutional Siamese tracker called LightFC. LightFC employs a novel efficient cross-correlation module (ECM) and a novel efficient rep-center head (ERH) to enhance the nonlinear expressiveness of the convolutional tracking pipeline. The ECM employs an attention-like module design, which conducts spatial and channel linear fusion of fused features and enhances the nonlinearly of the fused features. Additionally, it references successful factors of current lightweight trackers and introduces skip-connections and reuse of search area features. The ERH reparameterizes the feature dimensional stage in the standard center head and introduces channel attention to optimize the bottleneck of key feature flows. Comprehensive experiments show that LightFC achieves the optimal balance between performance, parameters, Flops and FPS. The precision score of LightFC outperforms MixFormerV2-S by 3.7 \% and 6.5 \% on LaSOT and TNL2K, respectively, while using 5x fewer parameters and 4.6x fewer Flops. Besides, LightFC runs 2x faster than MixFormerV2-S on CPUs. Our code and raw results can be found at https://github.com/LiYunfengLYF/LightFC

ORTexME: Occlusion-Robust Human Shape and Pose via Temporal Average Texture and Mesh Encoding

In 3D human shape and pose estimation from a monocular video, models trained with limited labeled data cannot generalize well to videos with occlusion, which is common in the wild videos. The recent human neural rendering approaches focusing on novel view synthesis initialized by the off-the-shelf human shape and pose methods have the potential to correct the initial human shape. However, the existing methods have some drawbacks such as, erroneous in handling occlusion, sensitive to inaccurate human segmentation, and ineffective loss computation due to the non-regularized opacity field. To address these problems, we introduce ORTexME, an occlusion-robust temporal method that utilizes temporal information from the input video to better regularize the occluded body parts. While our ORTexME is based on NeRF, to determine the reliable regions for the NeRF ray sampling, we utilize our novel average texture learning approach to learn the average appearance of a person, and to infer a mask based on the average texture. In addition, to guide the opacity-field updates in NeRF to suppress blur and noise, we propose the use of human body mesh. The quantitative evaluation demonstrates that our method achieves significant improvement on the challenging multi-person 3DPW dataset, where our method achieves 1.8 P-MPJPE error reduction. The SOTA rendering-based methods fail and enlarge the error up to 5.6 on the same dataset.

Semantic reconstruction of continuous language from MEG signals

Decoding language from neural signals holds considerable theoretical and practical importance. Previous research has indicated the feasibility of decoding text or speech from invasive neural signals. However, when using non-invasive neural signals, significant challenges are encountered due to their low quality. In this study, we proposed a data-driven approach for decoding semantic of language from Magnetoencephalography (MEG) signals recorded while subjects were listening to continuous speech. First, a multi-subject decoding model was trained using contrastive learning to reconstruct continuous word embeddings from MEG data. Subsequently, a beam search algorithm was adopted to generate text sequences based on the reconstructed word embeddings. Given a candidate sentence in the beam, a language model was used to predict the subsequent words. The word embeddings of the subsequent words were correlated with the reconstructed word embedding. These correlations were then used as a measure of the probability for the next word. The results showed that the proposed continuous word embedding model can effectively leverage both subject-specific and subject-shared information. Additionally, the decoded text exhibited significant similarity to the target text, with an average BERTScore of 0.816, a score comparable to that in the previous fMRI study.

A DenseNet-based method for decoding auditory spatial attention with EEG

Auditory spatial attention detection (ASAD) aims to decode the attended spatial location with EEG in a multiple-speaker setting. ASAD methods are inspired by the brain lateralization of cortical neural responses during the processing of auditory spatial attention, and show promising performance for the task of auditory attention decoding (AAD) with neural recordings. In the previous ASAD methods, the spatial distribution of EEG electrodes is not fully exploited, which may limit the performance of these methods. In the present work, by transforming the original EEG channels into a two-dimensional (2D) spatial topological map, the EEG data is transformed into a three-dimensional (3D) arrangement containing spatial-temporal information. And then a 3D deep convolutional neural network (DenseNet-3D) is used to extract temporal and spatial features of the neural representation for the attended locations. The results show that the proposed method achieves higher decoding accuracy than the state-of-the-art (SOTA) method (94.4% compared to XANet's 90.6%) with 1-second decision window for the widely used KULeuven (KUL) dataset, and the code to implement our work is available on Github: https://github.com/xuxiran/ASAD_DenseNet

UnitModule: A Lightweight Joint Image Enhancement Module for Underwater Object Detection

Underwater object detection faces the problem of underwater image degradation, which affects the performance of the detector. Underwater object detection methods based on noise reduction and image enhancement usually do not provide images preferred by the detector or require additional datasets. In this paper, we propose a plug-and-play Underwater joint image enhancement Module (UnitModule) that provides the input image preferred by the detector. We design an unsupervised learning loss for the joint training of UnitModule with the detector without additional datasets to improve the interaction between UnitModule and the detector. Furthermore, a color cast predictor with the assisting color cast loss and a data augmentation called Underwater Color Random Transfer (UCRT) are designed to improve the performance of UnitModule on underwater images with different color casts. Extensive experiments are conducted on DUO for different object detection models, where UnitModule achieves the highest performance improvement of 2.6 AP for YOLOv5-S and gains the improvement of 3.3 AP on the brand-new test set (URPCtest). And UnitModule significantly improves the performance of all object detection models we test, especially for models with a small number of parameters. In addition, UnitModule with a small number of parameters of 31K has little effect on the inference speed of the original object detection model. Our quantitative and visual analysis also demonstrates the effectiveness of UnitModule in enhancing the input image and improving the perception ability of the detector for object features.

Mind vs. Mouth: On Measuring Re-judge Inconsistency of Social Bias in Large Language Models

Recent researches indicate that Pre-trained Large Language Models (LLMs) possess cognitive constructs similar to those observed in humans, prompting researchers to investigate the cognitive aspects of LLMs. This paper focuses on explicit and implicit social bias, a distinctive two-level cognitive construct in psychology. It posits that individuals' explicit social bias, which is their conscious expression of bias in the statements, may differ from their implicit social bias, which represents their unconscious bias. We propose a two-stage approach and discover a parallel phenomenon in LLMs known as "re-judge inconsistency" in social bias. In the initial stage, the LLM is tasked with automatically completing statements, potentially incorporating implicit social bias. However, in the subsequent stage, the same LLM re-judges the biased statement generated by itself but contradicts it. We propose that this re-judge inconsistency can be similar to the inconsistency between human's unaware implicit social bias and their aware explicit social bias. Experimental investigations on ChatGPT and GPT-4 concerning common gender biases examined in psychology corroborate the highly stable nature of the re-judge inconsistency. This finding may suggest that diverse cognitive constructs emerge as LLMs' capabilities strengthen. Consequently, leveraging psychological theories can provide enhanced insights into the underlying mechanisms governing the expressions of explicit and implicit constructs in LLMs.

The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyperparameters in different experimental settings. Here, we present a multi-modality cell segmentation benchmark, comprising over 1500 labeled images derived from more than 50 diverse biological experiments. The top participants developed a Transformer-based deep-learning algorithm that not only exceeds existing methods, but can also be applied to diverse microscopy images across imaging platforms and tissue types without manual parameter adjustments. This benchmark and the improved algorithm offer promising avenues for more accurate and versatile cell analysis in microscopy imaging.