Senior member, IEEE
Abstract:Vision-language MoE batches contain different numbers of image and text tokens. Image resolution, image count, tiling, and prompt length all change this token mix. We call the standard token-level Switch auxiliary loss Std-Aux. Std-Aux balances only the mixed load, so large image and text load errors can cancel at one mix. On our main model, the same trained router shows more than a fivefold change in load imbalance across image resolutions. We hold the image and text load profiles fixed and derive the exact load curve as the token mix varies. The image-text load gap controls sensitivity to the token mix. Physical preprocessing can also change the conditional profiles. The fixed-profile law excludes such changes. To design a remedy, we examine the router input structure. Image and text occupy distinct regions, while visual tokens group strongly by source image. The modality boundary motivates separate image and text terms. The image boundary motivates one equal-weight routing instance per image. ReBA, or Relax Within, Balance Across, implements both choices. Across four split backbones, ReBA lowers load on every reported benchmark input while keeping mean task accuracy comparable to Std-Aux. ReBA also lowers average load over the tested range and worst physical load under resolution and tiling shifts. Code is available at https://github.com/ZiangWu-77/ReBA.
Abstract:Gene Ontology (GO) enrichment analysis is a foundational tool for translating large-scale genomic data into biological insights, but typically yields hundreds of redundant terms that obscure overarching themes. Existing summarization tools rely on fixed similarity metrics (REVIGO, GOSemSim, clusterProfiler::simplify()), gene-overlap measures (Metascape), or static hierarchy mappings (GO-slim), and therefore cannot incorporate biological context. Manual curation provides context-aware grouping but is subjective and labor-intensive. A scalable, context-aware framework is needed to cluster GO terms into interpretable higher-order biological domains. Here we present LLMBDC (Large Language Model for Biological Domains Oriented Clustering of Gene Ontology), a training-free framework that leverages zero-shot semantic reasoning of LLMs with confidence scoring to cluster GO terms into BioDomains using only ontology information at inference time. Benchmarked across Alzheimer's disease (AD) and Fragile X syndrome (FXS) against six baseline methods including SapBERT, LLMBDC achieved substantially higher precision, recall, and clustering performance. Against ground-truth annotations, LLMBDC improved ARI from 9.7% to 73.3% (AD) and from 15.7% to 66.6% (FXS) over REVIGO, with corresponding NMI gains from 59.9% to 73.4% (AD) and 66.0% to 79.5% (FXS). A Cauchy combination test further confirmed that aggregated BioDomains retained statistically significant functional signals. LLMBDC provides a scalable, reproducible, and interpretable route to context-aware, system-level interpretation of GO enrichment results while preserving biological specificity.
Abstract:Intelligent spectroscopy serves as a pivotal element in AI-driven closed-loop scientific discovery, functioning as the critical bridge between matter structure and artificial intelligence. However, conventional expert-dependent spectral interpretation encounters substantial hurdles, including susceptibility to human bias and error, dependence on limited specialized expertise, and variability across interpreters. To address these challenges, we propose SpecXMaster, an intelligent framework leveraging Agentic Reinforcement Learning (RL) for NMR molecular spectral interpretation. SpecXMaster enables automated extraction of multiplicity information from both 1H and 13C spectra directly from raw FID (free induction decay) data. This end-to-end pipeline enables fully automated interpretation of NMR spectra into chemical structures. It demonstrates superior performance across multiple public NMR interpretation benchmarks and has been refined through iterative evaluations by professional chemical spectroscopists. We believe that SpecXMaster, as a novel methodological paradigm for spectral interpretation, will have a profound impact on the organic chemistry community.
Abstract:Full Waveform Inversion (FWI) is a highly nonlinear and ill-posed problem that aims to recover subsurface velocity maps from surface-recorded seismic waveforms data. Existing data-driven FWI typically uses small models, as available datasets have limited volume, geological diversity, and spatial extent, leading to substantial concerns about overfitting. Although they perform well on synthetic datasets, current methods fail to generalize to more realistic geological structures. In this work, we show that a model trained entirely on simulated and relatively simple data can generalize remarkably well to challenging and unseen geological benchmarks. We provide a working recipe that tames a billion-parameter model for FWI through coordinated scaling across three axes: model capacity, data diversity, and training strategy. Our model achieves state-of-the-art performance on OpenFWI and significantly narrows the generalization gap in data-driven FWI. Across six challenging geophysical benchmarks, including Marmousi, 2D SEG/EAGE Salt and Overthrust, 2004 BP, Sigsbee, and SEAM Phase I, it infers complex structures absent from the training set and delivers significant performance improvements (SSIM from 0.5844 to 0.7669). Overall, our results demonstrate that with an appropriate scaling strategy, large models trained on simple synthetic data can achieve substantial generalization to more complex and realistic geological structures.
Abstract:We investigate the functional role of emergent outliers in large language models, specifically attention sinks (a few tokens that consistently receive large attention logits) and residual sinks (a few fixed dimensions with persistently large activations across most tokens). We hypothesize that these outliers, in conjunction with the corresponding normalizations (\textit{e.g.}, softmax attention and RMSNorm), effectively rescale other non-outlier components. We term this phenomenon \textit{outlier-driven rescaling} and validate this hypothesis across different model architectures and training token counts. This view unifies the origin and mitigation of both sink types. Our main conclusions and observations include: (1) Outliers function jointly with normalization: removing normalization eliminates the corresponding outliers but degrades training stability and performance; directly clipping outliers while retaining normalization leads to degradation, indicating that outlier-driven rescaling contributes to training stability. (2) Outliers serve more as rescale factors rather than contributors, as the final contributions of attention and residual sinks are significantly smaller than those of non-outliers. (3) Outliers can be absorbed into learnable parameters or mitigated via explicit gated rescaling, leading to improved training performance (average gain of 2 points) and enhanced quantization robustness (1.2 points degradation under W4A4 quantization).
Abstract:Due to the emergence of many sign language datasets, isolated sign language recognition (ISLR) has made significant progress in recent years. In addition, the development of various advanced deep neural networks is another reason for this breakthrough. However, challenges remain in applying the technique in the real world. First, existing sign language datasets do not cover the whole sign vocabulary. Second, most of the sign language datasets provide only single view RGB videos, which makes it difficult to handle hand occlusions when performing ISLR. To fill this gap, this paper presents a dual-view sign language dataset for ISLR named NationalCSL-DP, which fully covers the Chinese national sign language vocabulary. The dataset consists of 134140 sign videos recorded by ten signers with respect to two vertical views, namely, the front side and the left side. Furthermore, a CNN transformer network is also proposed as a strong baseline and an extremely simple but effective fusion strategy for prediction. Extensive experiments were conducted to prove the effectiveness of the datasets as well as the baseline. The results show that the proposed fusion strategy can significantly increase the performance of the ISLR, but it is not easy for the sequence-to-sequence model, regardless of whether the early-fusion or late-fusion strategy is applied, to learn the complementary features from the sign videos of two vertical views.
Abstract:Prostate cancer is one of the most common and lethal cancers among men, making its early detection critically important. Although ultrasound imaging offers greater accessibility and cost-effectiveness compared to MRI, traditional transrectal ultrasound methods suffer from low sensitivity, especially in detecting anteriorly located tumors. Ultrasound computed tomography provides quantitative tissue characterization, but its clinical implementation faces significant challenges, particularly under anatomically constrained limited-angle acquisition conditions specific to prostate imaging. To address these unmet needs, we introduce OpenPros, the first large-scale benchmark dataset explicitly developed for limited-view prostate USCT. Our dataset includes over 280,000 paired samples of realistic 2D speed-of-sound (SOS) phantoms and corresponding ultrasound full-waveform data, generated from anatomically accurate 3D digital prostate models derived from real clinical MRI/CT scans and ex vivo ultrasound measurements, annotated by medical experts. Simulations are conducted under clinically realistic configurations using advanced finite-difference time-domain and Runge-Kutta acoustic wave solvers, both provided as open-source components. Through comprehensive baseline experiments, we demonstrate that state-of-the-art deep learning methods surpass traditional physics-based approaches in both inference efficiency and reconstruction accuracy. Nevertheless, current deep learning models still fall short of delivering clinically acceptable high-resolution images with sufficient accuracy. By publicly releasing OpenPros, we aim to encourage the development of advanced machine learning algorithms capable of bridging this performance gap and producing clinically usable, high-resolution, and highly accurate prostate ultrasound images. The dataset is publicly accessible at https://open-pros.github.io/.
Abstract:This paper presents a systematic solution for the intelligent recognition and automatic analysis of microscopy images. We developed a data engine that generates high-quality annotated datasets through a combination of the collection of diverse microscopy images from experiments, synthetic data generation and a human-in-the-loop annotation process. To address the unique challenges of microscopy images, we propose a segmentation model capable of robustly detecting both small and large objects. The model effectively identifies and separates thousands of closely situated targets, even in cluttered visual environments. Furthermore, our solution supports the precise automatic recognition of image scale bars, an essential feature in quantitative microscopic analysis. Building upon these components, we have constructed a comprehensive intelligent analysis platform and validated its effectiveness and practicality in real-world applications. This study not only advances automatic recognition in microscopy imaging but also ensures scalability and generalizability across multiple application domains, offering a powerful tool for automated microscopic analysis in interdisciplinary research.
Abstract:Text-to-video (T2V) generation has made significant strides with diffusion models. However, existing methods still struggle with accurately binding attributes, determining spatial relationships, and capturing complex action interactions between multiple subjects. To address these limitations, we propose MagicComp, a training-free method that enhances compositional T2V generation through dual-phase refinement. Specifically, (1) During the Conditioning Stage: We introduce the Semantic Anchor Disambiguation to reinforces subject-specific semantics and resolve inter-subject ambiguity by progressively injecting the directional vectors of semantic anchors into original text embedding; (2) During the Denoising Stage: We propose Dynamic Layout Fusion Attention, which integrates grounding priors and model-adaptive spatial perception to flexibly bind subjects to their spatiotemporal regions through masked attention modulation. Furthermore, MagicComp is a model-agnostic and versatile approach, which can be seamlessly integrated into existing T2V architectures. Extensive experiments on T2V-CompBench and VBench demonstrate that MagicComp outperforms state-of-the-art methods, highlighting its potential for applications such as complex prompt-based and trajectory-controllable video generation. Project page: https://hong-yu-zhang.github.io/MagicComp-Page/.
Abstract:Text-to-Image (T2I) models are capable of generating high-quality artistic creations and visual content. However, existing research and evaluation standards predominantly focus on image realism and shallow text-image alignment, lacking a comprehensive assessment of complex semantic understanding and world knowledge integration in text to image generation. To address this challenge, we propose $\textbf{WISE}$, the first benchmark specifically designed for $\textbf{W}$orld Knowledge-$\textbf{I}$nformed $\textbf{S}$emantic $\textbf{E}$valuation. WISE moves beyond simple word-pixel mapping by challenging models with 1000 meticulously crafted prompts across 25 sub-domains in cultural common sense, spatio-temporal reasoning, and natural science. To overcome the limitations of traditional CLIP metric, we introduce $\textbf{WiScore}$, a novel quantitative metric for assessing knowledge-image alignment. Through comprehensive testing of 20 models (10 dedicated T2I models and 10 unified multimodal models) using 1,000 structured prompts spanning 25 subdomains, our findings reveal significant limitations in their ability to effectively integrate and apply world knowledge during image generation, highlighting critical pathways for enhancing knowledge incorporation and application in next-generation T2I models. Code and data are available at https://github.com/PKU-YuanGroup/WISE.