Nebula-I: A General Framework for Collaboratively Training Deep Learning Models on Low-Bandwidth Cloud Clusters

The ever-growing model size and scale of compute have attracted increasing interests in training deep learning models over multiple nodes. However, when it comes to training on cloud clusters, especially across remote clusters, huge challenges are faced. In this work, we introduce a general framework, Nebula-I, for collaboratively training deep learning models over remote heterogeneous clusters, the connections between which are low-bandwidth wide area networks (WANs). We took natural language processing (NLP) as an example to show how Nebula-I works in different training phases that include: a) pre-training a multilingual language model using two remote clusters; and b) fine-tuning a machine translation model using knowledge distilled from pre-trained models, which run through the most popular paradigm of recent deep learning. To balance the accuracy and communication efficiency, in Nebula-I, parameter-efficient training strategies, hybrid parallel computing methods and adaptive communication acceleration techniques are jointly applied. Meanwhile, security strategies are employed to guarantee the safety, reliability and privacy in intra-cluster computation and inter-cluster communication. Nebula-I is implemented with the PaddlePaddle deep learning framework, which can support collaborative training over heterogeneous hardware, e.g. GPU and NPU. Experiments demonstrate that the proposed framework could substantially maximize the training efficiency while preserving satisfactory NLP performance. By using Nebula-I, users can run large-scale training tasks over cloud clusters with minimum developments, and the utility of existed large pre-trained models could be further promoted. We also introduced new state-of-the-art results on cross-lingual natural language inference tasks, which are generated based upon a novel learning framework and Nebula-I.

A deep representation learning speech enhancement method using $β$-VAE

In previous work, we proposed a variational autoencoder-based (VAE) Bayesian permutation training speech enhancement (SE) method (PVAE) which indicated that the SE performance of the traditional deep neural network-based (DNN) method could be improved by deep representation learning (DRL). Based on our previous work, we in this paper propose to use $\beta$-VAE to further improve PVAE's ability of representation learning. More specifically, our $\beta$-VAE can improve PVAE's capacity of disentangling different latent variables from the observed signal without the trade-off problem between disentanglement and signal reconstruction. This trade-off problem widely exists in previous $\beta$-VAE algorithms. Unlike the previous $\beta$-VAE algorithms, the proposed $\beta$-VAE strategy can also be used to optimize the DNN's structure. This means that the proposed method can not only improve PVAE's SE performance but also reduce the number of PVAE training parameters. The experimental results show that the proposed method can acquire better speech and noise latent representation than PVAE. Meanwhile, it also obtains a higher scale-invariant signal-to-distortion ratio, speech quality, and speech intelligibility.

CATNet: Cross-event Attention-based Time-aware Network for Medical Event Prediction

Medical event prediction (MEP) is a fundamental task in the medical domain, which needs to predict medical events, including medications, diagnosis codes, laboratory tests, procedures, outcomes, and so on, according to historical medical records. The task is challenging as medical data is a type of complex time series data with heterogeneous and temporal irregular characteristics. Many machine learning methods that consider the two characteristics have been proposed for medical event prediction. However, most of them consider the two characteristics separately and ignore the correlations among different types of medical events, especially relations between historical medical events and target medical events. In this paper, we propose a novel neural network based on attention mechanism, called cross-event attention-based time-aware network (CATNet), for medical event prediction. It is a time-aware, event-aware and task-adaptive method with the following advantages: 1) modeling heterogeneous information and temporal information in a unified way and considering temporal irregular characteristics locally and globally respectively, 2) taking full advantage of correlations among different types of events via cross-event attention. Experiments on two public datasets (MIMIC-III and eICU) show CATNet can be adaptive with different MEP tasks and outperforms other state-of-the-art methods on various MEP tasks. The source code of CATNet will be released after this manuscript is accepted.

FAAG: Fast Adversarial Audio Generation through Interactive Attack Optimisation

Automatic Speech Recognition services (ASRs) inherit deep neural networks' vulnerabilities like crafted adversarial examples. Existing methods often suffer from low efficiency because the target phases are added to the entire audio sample, resulting in high demand for computational resources. This paper proposes a novel scheme named FAAG as an iterative optimization-based method to generate targeted adversarial examples quickly. By injecting the noise over the beginning part of the audio, FAAG generates adversarial audio in high quality with a high success rate timely. Specifically, we use audio's logits output to map each character in the transcription to an approximate position of the audio's frame. Thus, an adversarial example can be generated by FAAG in approximately two minutes using CPUs only and around ten seconds with one GPU while maintaining an average success rate over 85%. Specifically, the FAAG method can speed up around 60% compared with the baseline method during the adversarial example generation process. Furthermore, we found that appending benign audio to any suspicious examples can effectively defend against the targeted adversarial attack. We hope that this work paves the way for inventing new adversarial attacks against speech recognition with computational constraints.

Two heads are better than one: Enhancing medical representations by pre-training over structured and unstructured electronic health records

The massive context of electronic health records (EHRs) has created enormous potentials for improving healthcare, among which structured (coded) data and unstructured (text) data are two important textual modalities. They do not exist in isolation and can complement each other in most real-life clinical scenarios. Most existing researches in medical informatics, however, either only focus on a particular modality or straightforwardly concatenate the information from different modalities, which ignore the interaction and information sharing between them. To address these issues, we proposed a unified deep learning-based medical pre-trained language model, named UMM-PLM, to automatically learn representative features from multimodal EHRs that consist of both structured data and unstructured data. Specifically, we first developed parallel unimodal information representation modules to capture the unimodal-specific characteristic, where unimodal representations were learned from each data source separately. A cross-modal module was further introduced to model the interactions between different modalities. We pre-trained the model on a large EHRs dataset containing both structured data and unstructured data and verified the effectiveness of the model on three downstream clinical tasks, i.e., medication recommendation, 30-day readmission and ICD coding through extensive experiments. The results demonstrate the power of UMM-PLM compared with benchmark methods and state-of-the-art baselines. Analyses show that UMM-PLM can effectively concern with multimodal textual information and has the potential to provide more comprehensive interpretations for clinical decision making.

A Bayesian Permutation training deep representation learning method for speech enhancement with variational autoencoder

Recently, variational autoencoder (VAE), a deep representation learning (DRL) model, has been used to perform speech enhancement (SE). However, to the best of our knowledge, current VAE-based SE methods only apply VAE to the model speech signal, while noise is modeled using the traditional non-negative matrix factorization (NMF) model. One of the most important reasons for using NMF is that these VAE-based methods cannot disentangle the speech and noise latent variables from the observed signal. Based on Bayesian theory, this paper derives a novel variational lower bound for VAE, which ensures that VAE can be trained in supervision, and can disentangle speech and noise latent variables from the observed signal. This means that the proposed method can apply the VAE to model both speech and noise signals, which is totally different from the previous VAE-based SE works. More specifically, the proposed DRL method can learn to impose speech and noise signal priors to different sets of latent variables for SE. The experimental results show that the proposed method can not only disentangle speech and noise latent variables from the observed signal but also obtain a higher scale-invariant signal-to-distortion ratio and speech quality score than the similar deep neural network-based (DNN) SE method.

ERNIE 3.0 Titan: Exploring Larger-scale Knowledge Enhanced Pre-training for Language Understanding and Generation

Pre-trained language models have achieved state-of-the-art results in various Natural Language Processing (NLP) tasks. GPT-3 has shown that scaling up pre-trained language models can further exploit their enormous potential. A unified framework named ERNIE 3.0 was recently proposed for pre-training large-scale knowledge enhanced models and trained a model with 10 billion parameters. ERNIE 3.0 outperformed the state-of-the-art models on various NLP tasks. In order to explore the performance of scaling up ERNIE 3.0, we train a hundred-billion-parameter model called ERNIE 3.0 Titan with up to 260 billion parameters on the PaddlePaddle platform. Furthermore, we design a self-supervised adversarial loss and a controllable language modeling loss to make ERNIE 3.0 Titan generate credible and controllable texts. To reduce the computation overhead and carbon emission, we propose an online distillation framework for ERNIE 3.0 Titan, where the teacher model will teach students and train itself simultaneously. ERNIE 3.0 Titan is the largest Chinese dense pre-trained model so far. Empirical results show that the ERNIE 3.0 Titan outperforms the state-of-the-art models on 68 NLP datasets.

Machine Learning for Multimodal Electronic Health Records-based Research: Challenges and Perspectives

Background: Electronic Health Records (EHRs) contain rich information of patients' health history, which usually include both structured and unstructured data. There have been many studies focusing on distilling valuable information from structured data, such as disease codes, laboratory test results, and treatments. However, relying on structured data only might be insufficient in reflecting patients' comprehensive information and such data may occasionally contain erroneous records. Objective: With the recent advances of machine learning (ML) and deep learning (DL) techniques, an increasing number of studies seek to obtain more accurate results by incorporating unstructured free-text data as well. This paper reviews studies that use multimodal data, i.e. a combination of structured and unstructured data, from EHRs as input for conventional ML or DL models to address the targeted tasks. Materials and Methods: We searched in the Institute of Electrical and Electronics Engineers (IEEE) Digital Library, PubMed, and Association for Computing Machinery (ACM) Digital Library for articles related to ML-based multimodal EHR studies. Results and Discussion: With the final 94 included studies, we focus on how data from different modalities were combined and interacted using conventional ML and DL techniques, and how these algorithms were applied in EHR-related tasks. Further, we investigate the advantages and limitations of these fusion methods and indicate future directions for ML-based multimodal EHR research.

Simple Recurrent Neural Networks is all we need for clinical events predictions using EHR data

Recently, there is great interest to investigate the application of deep learning models for the prediction of clinical events using electronic health records (EHR) data. In EHR data, a patient's history is often represented as a sequence of visits, and each visit contains multiple events. As a result, deep learning models developed for sequence modeling, like recurrent neural networks (RNNs) are common architecture for EHR-based clinical events predictive models. While a large variety of RNN models were proposed in the literature, it is unclear if complex architecture innovations will offer superior predictive performance. In order to move this field forward, a rigorous evaluation of various methods is needed. In this study, we conducted a thorough benchmark of RNN architectures in modeling EHR data. We used two prediction tasks: the risk for developing heart failure and the risk of early readmission for inpatient hospitalization. We found that simple gated RNN models, including GRUs and LSTMs, often offer competitive results when properly tuned with Bayesian Optimization, which is in line with similar to findings in the natural language processing (NLP) domain. For reproducibility, Our codebase is shared at https://github.com/ZhiGroup/pytorch_ehr.

GlyphCRM: Bidirectional Encoder Representation for Chinese Character with its Glyph

Previous works indicate that the glyph of Chinese characters contains rich semantic information and has the potential to enhance the representation of Chinese characters. The typical method to utilize the glyph features is by incorporating them into the character embedding space. Inspired by previous methods, we innovatively propose a Chinese pre-trained representation model named as GlyphCRM, which abandons the ID-based character embedding method yet solely based on sequential character images. We render each character into a binary grayscale image and design two-channel position feature maps for it. Formally, we first design a two-layer residual convolutional neural network, namely HanGlyph to generate the initial glyph representation of Chinese characters, and subsequently adopt multiple bidirectional encoder Transformer blocks as the superstructure to capture the context-sensitive information. Meanwhile, we feed the glyph features extracted from each layer of the HanGlyph module into the underlying Transformer blocks by skip-connection method to fully exploit the glyph features of Chinese characters. As the HanGlyph module can obtain a sufficient glyph representation of any Chinese character, the long-standing out-of-vocabulary problem could be effectively solved. Extensive experimental results indicate that GlyphCRM substantially outperforms the previous BERT-based state-of-the-art model on 9 fine-tuning tasks, and it has strong transferability and generalization on specialized fields and low-resource tasks. We hope this work could spark further research beyond the realms of well-established representation of Chinese texts.