A Generalized Genetic Random Field Method for the Genetic Association Analysis of Sequencing Data

With the advance of high-throughput sequencing technologies, it has become feasible to investigate the influence of the entire spectrum of sequencing variations on complex human diseases. Although association studies utilizing the new sequencing technologies hold great promise to unravel novel genetic variants, especially rare genetic variants that contribute to human diseases, the statistical analysis of high-dimensional sequencing data remains a challenge. Advanced analytical methods are in great need to facilitate high-dimensional sequencing data analyses. In this article, we propose a generalized genetic random field (GGRF) method for association analyses of sequencing data. Like other similarity-based methods (e.g., SIMreg and SKAT), the new method has the advantages of avoiding the need to specify thresholds for rare variants and allowing for testing multiple variants acting in different directions and magnitude of effects. The method is built on the generalized estimating equation framework and thus accommodates a variety of disease phenotypes (e.g., quantitative and binary phenotypes). Moreover, it has a nice asymptotic property, and can be applied to small-scale sequencing data without need for small-sample adjustment. Through simulations, we demonstrate that the proposed GGRF attains an improved or comparable power over a commonly used method, SKAT, under various disease scenarios, especially when rare variants play a significant role in disease etiology. We further illustrate GGRF with an application to a real dataset from the Dallas Heart Study. By using GGRF, we were able to detect the association of two candidate genes, ANGPTL3 and ANGPTL4, with serum triglyceride.

VisR-Bench: An Empirical Study on Visual Retrieval-Augmented Generation for Multilingual Long Document Understanding

Most organizational data in this world are stored as documents, and visual retrieval plays a crucial role in unlocking the collective intelligence from all these documents. However, existing benchmarks focus on English-only document retrieval or only consider multilingual question-answering on a single-page image. To bridge this gap, we introduce VisR-Bench, a multilingual benchmark designed for question-driven multimodal retrieval in long documents. Our benchmark comprises over 35K high-quality QA pairs across 1.2K documents, enabling fine-grained evaluation of multimodal retrieval. VisR-Bench spans sixteen languages with three question types (figures, text, and tables), offering diverse linguistic and question coverage. Unlike prior datasets, we include queries without explicit answers, preventing models from relying on superficial keyword matching. We evaluate various retrieval models, including text-based methods, multimodal encoders, and MLLMs, providing insights into their strengths and limitations. Our results show that while MLLMs significantly outperform text-based and multimodal encoder models, they still struggle with structured tables and low-resource languages, highlighting key challenges in multilingual visual retrieval.

MDK12-Bench: A Comprehensive Evaluation of Multimodal Large Language Models on Multidisciplinary Exams

Multimodal large language models (MLLMs), which integrate language and visual cues for problem-solving, are crucial for advancing artificial general intelligence (AGI). However, current benchmarks for measuring the intelligence of MLLMs suffer from limited scale, narrow coverage, and unstructured knowledge, offering only static and undifferentiated evaluations. To bridge this gap, we introduce MDK12-Bench, a large-scale multidisciplinary benchmark built from real-world K-12 exams spanning six disciplines with 141K instances and 6,225 knowledge points organized in a six-layer taxonomy. Covering five question formats with difficulty and year annotations, it enables comprehensive evaluation to capture the extent to which MLLMs perform over four dimensions: 1) difficulty levels, 2) temporal (cross-year) shifts, 3) contextual shifts, and 4) knowledge-driven reasoning. We propose a novel dynamic evaluation framework that introduces unfamiliar visual, textual, and question form shifts to challenge model generalization while improving benchmark objectivity and longevity by mitigating data contamination. We further evaluate knowledge-point reference-augmented generation (KP-RAG) to examine the role of knowledge in problem-solving. Key findings reveal limitations in current MLLMs in multiple aspects and provide guidance for enhancing model robustness, interpretability, and AI-assisted education.

SEF-MK: Speaker-Embedding-Free Voice Anonymization through Multi-k-means Quantization

Voice anonymization protects speaker privacy by concealing identity while preserving linguistic and paralinguistic content. Self-supervised learning (SSL) representations encode linguistic features but preserve speaker traits. We propose a novel speaker-embedding-free framework called SEF-MK. Instead of using a single k-means model trained on the entire dataset, SEF-MK anonymizes SSL representations for each utterance by randomly selecting one of multiple k-means models, each trained on a different subset of speakers. We explore this approach from both attacker and user perspectives. Extensive experiments show that, compared to a single k-means model, SEF-MK with multiple k-means models better preserves linguistic and emotional content from the user's viewpoint. However, from the attacker's perspective, utilizing multiple k-means models boosts the effectiveness of privacy attacks. These insights can aid users in designing voice anonymization systems to mitigate attacker threats.

XSpecMesh: Quality-Preserving Auto-Regressive Mesh Generation Acceleration via Multi-Head Speculative Decoding

Current auto-regressive models can generate high-quality, topologically precise meshes; however, they necessitate thousands-or even tens of thousands-of next-token predictions during inference, resulting in substantial latency. We introduce XSpecMesh, a quality-preserving acceleration method for auto-regressive mesh generation models. XSpecMesh employs a lightweight, multi-head speculative decoding scheme to predict multiple tokens in parallel within a single forward pass, thereby accelerating inference. We further propose a verification and resampling strategy: the backbone model verifies each predicted token and resamples any tokens that do not meet the quality criteria. In addition, we propose a distillation strategy that trains the lightweight decoding heads by distilling from the backbone model, encouraging their prediction distributions to align and improving the success rate of speculative predictions. Extensive experiments demonstrate that our method achieves a 1.7x speedup without sacrificing generation quality. Our code will be released.

Kimi K2: Open Agentic Intelligence

We introduce Kimi K2, a Mixture-of-Experts (MoE) large language model with 32 billion activated parameters and 1 trillion total parameters. We propose the MuonClip optimizer, which improves upon Muon with a novel QK-clip technique to address training instability while enjoying the advanced token efficiency of Muon. Based on MuonClip, K2 was pre-trained on 15.5 trillion tokens with zero loss spike. During post-training, K2 undergoes a multi-stage post-training process, highlighted by a large-scale agentic data synthesis pipeline and a joint reinforcement learning (RL) stage, where the model improves its capabilities through interactions with real and synthetic environments. Kimi K2 achieves state-of-the-art performance among open-source non-thinking models, with strengths in agentic capabilities. Notably, K2 obtains 66.1 on Tau2-Bench, 76.5 on ACEBench (En), 65.8 on SWE-Bench Verified, and 47.3 on SWE-Bench Multilingual -- surpassing most open and closed-sourced baselines in non-thinking settings. It also exhibits strong capabilities in coding, mathematics, and reasoning tasks, with a score of 53.7 on LiveCodeBench v6, 49.5 on AIME 2025, 75.1 on GPQA-Diamond, and 27.1 on OJBench, all without extended thinking. These results position Kimi K2 as one of the most capable open-source large language models to date, particularly in software engineering and agentic tasks. We release our base and post-trained model checkpoints to facilitate future research and applications of agentic intelligence.

Step-Audio 2 Technical Report

This paper presents Step-Audio 2, an end-to-end multi-modal large language model designed for industry-strength audio understanding and speech conversation. By integrating a latent audio encoder and reasoning-centric reinforcement learning (RL), Step-Audio 2 achieves promising performance in automatic speech recognition (ASR) and audio understanding. To facilitate genuine end-to-end speech conversation, Step-Audio 2 incorporates the generation of discrete audio tokens into language modeling, significantly enhancing its responsiveness to paralinguistic information such as speaking styles and emotions. To effectively leverage the rich textual and acoustic knowledge in real-world data, Step-Audio 2 integrates retrieval-augmented generation (RAG) and is able to call external tools such as web search to mitigate hallucination and audio search to switch timbres. Trained on millions of hours of speech and audio data, Step-Audio 2 delivers intelligence and expressiveness across diverse conversational scenarios. Evaluation results demonstrate that Step-Audio 2 achieves state-of-the-art performance on various audio understanding and conversational benchmarks compared to other open-source and commercial solutions. Please visit https://github.com/stepfun-ai/Step-Audio2 for more information.

PyVision: Agentic Vision with Dynamic Tooling

LLMs are increasingly deployed as agents, systems capable of planning, reasoning, and dynamically calling external tools. However, in visual reasoning, prior approaches largely remain limited by predefined workflows and static toolsets. In this report, we present PyVision, an interactive, multi-turn framework that enables MLLMs to autonomously generate, execute, and refine Python-based tools tailored to the task at hand, unlocking flexible and interpretable problem-solving. We develop a taxonomy of the tools created by PyVision and analyze their usage across a diverse set of benchmarks. Quantitatively, PyVision achieves consistent performance gains, boosting GPT-4.1 by +7.8% on V* and Claude-4.0-Sonnet by +31.1% on VLMsAreBlind-mini. These results point to a broader shift: dynamic tooling allows models not just to use tools, but to invent them, advancing toward more agentic visual reasoning.

Graph Learning for Cooperative Cell-Free ISAC Systems: From Optimization to Estimation

Cell-free integrated sensing and communication (ISAC) systems have emerged as a promising paradigm for sixth-generation (6G) networks, enabling simultaneous high-rate data transmission and high-precision radar sensing through cooperative distributed access points (APs). Fully exploiting these capabilities requires a unified design that bridges system-level optimization with multi-target parameter estimation. This paper proposes an end-to-end graph learning approach to close this gap, modeling the entire cell-free ISAC network as a heterogeneous graph to jointly design the AP mode selection, user association, precoding, and echo signal processing for multi-target position and velocity estimation. In particular, we propose two novel heterogeneous graph learning frameworks: a dynamic graph learning framework and a lightweight mirror-based graph attention network (mirror-GAT) framework. The dynamic graph learning framework employs structural and temporal attention mechanisms integrated with a three-dimensional convolutional neural network (3D-CNN), enabling superior performance and robustness in cell-free ISAC environments. Conversely, the mirror-GAT framework significantly reduces computational complexity and signaling overhead through a bi-level iterative structure with share adjacency. Simulation results validate that both proposed graph-learning-based frameworks achieve significant improvements in multi-target position and velocity estimation accuracy compared to conventional heuristic and optimization-based designs. Particularly, the mirror-GAT framework demonstrates substantial reductions in computational time and signaling overhead, underscoring its suitability for practical deployments.

Robust Brain Tumor Segmentation with Incomplete MRI Modalities Using Hölder Divergence and Mutual Information-Enhanced Knowledge Transfer

Multimodal MRI provides critical complementary information for accurate brain tumor segmentation. However, conventional methods struggle when certain modalities are missing due to issues such as image quality, protocol inconsistencies, patient allergies, or financial constraints. To address this, we propose a robust single-modality parallel processing framework that achieves high segmentation accuracy even with incomplete modalities. Leveraging Holder divergence and mutual information, our model maintains modality-specific features while dynamically adjusting network parameters based on the available inputs. By using these divergence- and information-based loss functions, the framework effectively quantifies discrepancies between predictions and ground-truth labels, resulting in consistently accurate segmentation. Extensive evaluations on the BraTS 2018 and BraTS 2020 datasets demonstrate superior performance over existing methods in handling missing modalities.