Unveiling Transformers with LEGO: a synthetic reasoning task

We propose a synthetic task, LEGO (Learning Equality and Group Operations), that encapsulates the problem of following a chain of reasoning, and we study how the transformer architecture learns this task. We pay special attention to data effects such as pretraining (on seemingly unrelated NLP tasks) and dataset composition (e.g., differing chain length at training and test time), as well as architectural variants such as weight-tied layers or adding convolutional components. We study how the trained models eventually succeed at the task, and in particular, we are able to understand (to some extent) some of the attention heads as well as how the information flows in the network. Based on these observations we propose a hypothesis that here pretraining helps merely due to being a smart initialization rather than some deep knowledge stored in the network. We also observe that in some data regime the trained transformer finds "shortcut" solutions to follow the chain of reasoning, which impedes the model's ability to generalize to simple variants of the main task, and moreover we find that one can prevent such shortcut with appropriate architecture modification or careful data preparation. Motivated by our findings, we begin to explore the task of learning to execute C programs, where a convolutional modification to transformers, namely adding convolutional structures in the key/query/value maps, shows an encouraging edge.

Hypernetwork-based Personalized Federated Learning for Multi-Institutional CT Imaging

Computed tomography (CT) is of great importance in clinical practice due to its powerful ability to provide patients' anatomical information without any invasive inspection, but its potential radiation risk is raising people's concerns. Deep learning-based methods are considered promising in CT reconstruction, but these network models are usually trained with the measured data obtained from specific scanning protocol and need to centralizedly collect large amounts of data, which will lead to serious data domain shift, and privacy concerns. To relieve these problems, in this paper, we propose a hypernetwork-based federated learning method for personalized CT imaging, dubbed as HyperFed. The basic assumption of HyperFed is that the optimization problem for each institution can be divided into two parts: the local data adaption problem and the global CT imaging problem, which are implemented by an institution-specific hypernetwork and a global-sharing imaging network, respectively. The purpose of global-sharing imaging network is to learn stable and effective common features from different institutions. The institution-specific hypernetwork is carefully designed to obtain hyperparameters to condition the global-sharing imaging network for personalized local CT reconstruction. Experiments show that HyperFed achieves competitive performance in CT reconstruction compared with several other state-of-the-art methods. It is believed as a promising direction to improve CT imaging quality and achieve personalized demands of different institutions or scanners without privacy data sharing. The codes will be released at https://github.com/Zi-YuanYang/HyperFed.

Aerial Vision-and-Dialog Navigation

The ability to converse with humans and follow commands in natural language is crucial for intelligent unmanned aerial vehicles (a.k.a. drones). It can relieve people's burden of holding a controller all the time, allow multitasking, and make drone control more accessible for people with disabilities or with their hands occupied. To this end, we introduce Aerial Vision-and-Dialog Navigation (AVDN), to navigate a drone via natural language conversation. We build a drone simulator with a continuous photorealistic environment and collect a new AVDN dataset of over 3k recorded navigation trajectories with asynchronous human-human dialogs between commanders and followers. The commander provides initial navigation instruction and further guidance by request, while the follower navigates the drone in the simulator and asks questions when needed. During data collection, followers' attention on the drone's visual observation is also recorded. Based on the AVDN dataset, we study the tasks of aerial navigation from (full) dialog history and propose an effective Human Attention Aided (HAA) baseline model, which learns to predict both navigation waypoints and human attention. Dataset and code will be released.

A microstructure estimation Transformer inspired by sparse representation for diffusion MRI

Diffusion magnetic resonance imaging (dMRI) is an important tool in characterizing tissue microstructure based on biophysical models, which are complex and highly non-linear. Resolving microstructures with optimization techniques is prone to estimation errors and requires dense sampling in the q-space. Deep learning based approaches have been proposed to overcome these limitations. Motivated by the superior performance of the Transformer, in this work, we present a learning-based framework based on Transformer, namely, a Microstructure Estimation Transformer with Sparse Coding (METSC) for dMRI-based microstructure estimation with downsampled q-space data. To take advantage of the Transformer while addressing its limitation in large training data requirements, we explicitly introduce an inductive bias - model bias into the Transformer using a sparse coding technique to facilitate the training process. Thus, the METSC is composed with three stages, an embedding stage, a sparse representation stage, and a mapping stage. The embedding stage is a Transformer-based structure that encodes the signal to ensure the voxel is represented effectively. In the sparse representation stage, a dictionary is constructed by solving a sparse reconstruction problem that unfolds the Iterative Hard Thresholding (IHT) process. The mapping stage is essentially a decoder that computes the microstructural parameters from the output of the second stage, based on the weighted sum of normalized dictionary coefficients where the weights are also learned. We tested our framework on two dMRI models with downsampled q-space data, including the intravoxel incoherent motion (IVIM) model and the neurite orientation dispersion and density imaging (NODDI) model. The proposed method achieved up to 11.25 folds of acceleration in scan time and outperformed the other state-of-the-art learning-based methods.

AFFIRM: Affinity Fusion-based Framework for Iteratively Random Motion correction of multi-slice fetal brain MRI

Multi-slice magnetic resonance images of the fetal brain are usually contaminated by severe and arbitrary fetal and maternal motion. Hence, stable and robust motion correction is necessary to reconstruct high-resolution 3D fetal brain volume for clinical diagnosis and quantitative analysis. However, the conventional registration-based correction has a limited capture range and is insufficient for detecting relatively large motions. Here, we present a novel Affinity Fusion-based Framework for Iteratively Random Motion (AFFIRM) correction of the multi-slice fetal brain MRI. It learns the sequential motion from multiple stacks of slices and integrates the features between 2D slices and reconstructed 3D volume using affinity fusion, which resembles the iterations between slice-to-volume registration and volumetric reconstruction in the regular pipeline. The method accurately estimates the motion regardless of brain orientations and outperforms other state-of-the-art learning-based methods on the simulated motion-corrupted data, with a 48.4% reduction of mean absolute error for rotation and 61.3% for displacement. We then incorporated AFFIRM into the multi-resolution slice-to-volume registration and tested it on the real-world fetal MRI scans at different gestation stages. The results indicated that adding AFFIRM to the conventional pipeline improved the success rate of fetal brain super-resolution reconstruction from 77.2% to 91.9%.

Clinical Prompt Learning with Frozen Language Models

Prompt learning is a new paradigm in the Natural Language Processing (NLP) field which has shown impressive performance on a number of natural language tasks with common benchmarking text datasets in full, few-shot, and zero-shot train-evaluation setups. Recently, it has even been observed that large but frozen pre-trained language models (PLMs) with prompt learning outperform smaller but fine-tuned models. However, as with many recent NLP trends, the performance of even the largest PLMs such as GPT-3 do not perform well on specialized domains (e.g. medical text), and the common practice to achieve State of the Art (SoTA) results still consists of pre-training and fine-tuning the PLMs on downstream tasks. The reliance on fine-tuning large PLMs is problematic in clinical settings where data is often held in non-GPU environments, and more resource efficient methods of training specialized domain models is crucial. We investigated the viability of prompt learning on clinically meaningful decision tasks and directly compared with more traditional fine-tuning methods. Results are partially in line with the prompt learning literature, with prompt learning able to match or improve on traditional fine-tuning with substantially fewer trainable parameters and requiring less training data. We argue that prompt learning therefore provides lower computational resource costs applicable to clinical settings, that can serve as an alternative to fine-tuning ever increasing in size PLMs. Complementary code to reproduce experiments presented in this work can be found at: https://github.com/NtaylorOX/Public_Clinical_Prompt.

Efficient Burst Raw Denoising with Variance Stabilization and Multi-frequency Denoising Network

With the growing popularity of smartphones, capturing high-quality images is of vital importance to smartphones. The cameras of smartphones have small apertures and small sensor cells, which lead to the noisy images in low light environment. Denoising based on a burst of multiple frames generally outperforms single frame denoising but with the larger compututional cost. In this paper, we propose an efficient yet effective burst denoising system. We adopt a three-stage design: noise prior integration, multi-frame alignment and multi-frame denoising. First, we integrate noise prior by pre-processing raw signals into a variance-stabilization space, which allows using a small-scale network to achieve competitive performance. Second, we observe that it is essential to adopt an explicit alignment for burst denoising, but it is not necessary to integrate a learning-based method to perform multi-frame alignment. Instead, we resort to a conventional and efficient alignment method and combine it with our multi-frame denoising network. At last, we propose a denoising strategy that processes multiple frames sequentially. Sequential denoising avoids filtering a large number of frames by decomposing multiple frames denoising into several efficient sub-network denoising. As for each sub-network, we propose an efficient multi-frequency denoising network to remove noise of different frequencies. Our three-stage design is efficient and shows strong performance on burst denoising. Experiments on synthetic and real raw datasets demonstrate that our method outperforms state-of-the-art methods, with less computational cost. Furthermore, the low complexity and high-quality performance make deployment on smartphones possible.

Indoor simultaneous localization and mapping based on fringe projection profilometry

Simultaneous Localization and Mapping (SLAM) plays an important role in outdoor and indoor applications ranging from autonomous driving to indoor robotics. Outdoor SLAM has been widely used with the assistance of LiDAR or GPS. For indoor applications, the LiDAR technique does not satisfy the accuracy requirement and the GPS signals will be lost. An accurate and efficient scene sensing technique is required for indoor SLAM. As the most promising 3D sensing technique, the opportunities for indoor SLAM with fringe projection profilometry (FPP) systems are obvious, but methods to date have not fully leveraged the accuracy and speed of sensing that such systems offer. In this paper, we propose a novel FPP-based indoor SLAM method based on the coordinate transformation relationship of FPP, where the 2D-to-3D descriptor-assisted is used for mapping and localization. The correspondences generated by matching descriptors are used for fast and accurate mapping, and the transform estimation between the 2D and 3D descriptors is used to localize the sensor. The provided experimental results demonstrate that the proposed indoor SLAM can achieve the localization and mapping accuracy around one millimeter.

Dialogue Meaning Representation for Task-Oriented Dialogue Systems

Dialogue meaning representation formulates natural language utterance semantics in their conversational context in an explicit and machine-readable form. Previous work typically follows the intent-slot framework, which is easy for annotation yet limited on scalability for complex linguistic expressions. A line of works alleviates the representation issue by introducing hierarchical structures but challenging to express complex compositional semantics, such as negation and coreference. We propose Dialogue Meaning Representation (DMR), a flexible and easily extendable representation for task-oriented dialogue. Our representation contains a set of nodes and edges with inheritance hierarchy to represent rich semantics for compositional semantics and task-specific concepts. We annotated DMR-FastFood, a multi-turn dialogue dataset with more than 70k utterances, with DMR. We propose two evaluation tasks to evaluate different machine learning based dialogue models, and further propose a novel coreference resolution model GNNCoref for the graph-based coreference resolution task. Experiments show that DMR can be parsed well with pretrained Seq2Seq model, and GNNCoref outperforms the baseline models by a large margin.

Label Semantic Aware Pre-training for Few-shot Text Classification

In text classification tasks, useful information is encoded in the label names. Label semantic aware systems have leveraged this information for improved text classification performance during fine-tuning and prediction. However, use of label-semantics during pre-training has not been extensively explored. We therefore propose Label Semantic Aware Pre-training (LSAP) to improve the generalization and data efficiency of text classification systems. LSAP incorporates label semantics into pre-trained generative models (T5 in our case) by performing secondary pre-training on labeled sentences from a variety of domains. As domain-general pre-training requires large amounts of data, we develop a filtering and labeling pipeline to automatically create sentence-label pairs from unlabeled text. We perform experiments on intent (ATIS, Snips, TOPv2) and topic classification (AG News, Yahoo! Answers). LSAP obtains significant accuracy improvements over state-of-the-art models for few-shot text classification while maintaining performance comparable to state of the art in high-resource settings.