Innovator-VL: A Multimodal Large Language Model for Scientific Discovery

We present Innovator-VL, a scientific multimodal large language model designed to advance understanding and reasoning across diverse scientific domains while maintaining excellent performance on general vision tasks. Contrary to the trend of relying on massive domain-specific pretraining and opaque pipelines, our work demonstrates that principled training design and transparent methodology can yield strong scientific intelligence with substantially reduced data requirements. (i) First, we provide a fully transparent, end-to-end reproducible training pipeline, covering data collection, cleaning, preprocessing, supervised fine-tuning, reinforcement learning, and evaluation, along with detailed optimization recipes. This facilitates systematic extension by the community. (ii) Second, Innovator-VL exhibits remarkable data efficiency, achieving competitive performance on various scientific tasks using fewer than five million curated samples without large-scale pretraining. These results highlight that effective reasoning can be achieved through principled data selection rather than indiscriminate scaling. (iii) Third, Innovator-VL demonstrates strong generalization, achieving competitive performance on general vision, multimodal reasoning, and scientific benchmarks. This indicates that scientific alignment can be integrated into a unified model without compromising general-purpose capabilities. Our practices suggest that efficient, reproducible, and high-performing scientific multimodal models can be built even without large-scale data, providing a practical foundation for future research.

AgentDoG: A Diagnostic Guardrail Framework for AI Agent Safety and Security

The rise of AI agents introduces complex safety and security challenges arising from autonomous tool use and environmental interactions. Current guardrail models lack agentic risk awareness and transparency in risk diagnosis. To introduce an agentic guardrail that covers complex and numerous risky behaviors, we first propose a unified three-dimensional taxonomy that orthogonally categorizes agentic risks by their source (where), failure mode (how), and consequence (what). Guided by this structured and hierarchical taxonomy, we introduce a new fine-grained agentic safety benchmark (ATBench) and a Diagnostic Guardrail framework for agent safety and security (AgentDoG). AgentDoG provides fine-grained and contextual monitoring across agent trajectories. More Crucially, AgentDoG can diagnose the root causes of unsafe actions and seemingly safe but unreasonable actions, offering provenance and transparency beyond binary labels to facilitate effective agent alignment. AgentDoG variants are available in three sizes (4B, 7B, and 8B parameters) across Qwen and Llama model families. Extensive experimental results demonstrate that AgentDoG achieves state-of-the-art performance in agentic safety moderation in diverse and complex interactive scenarios. All models and datasets are openly released.

Toward Ultra-Long-Horizon Agentic Science: Cognitive Accumulation for Machine Learning Engineering

The advancement of artificial intelligence toward agentic science is currently bottlenecked by the challenge of ultra-long-horizon autonomy, the ability to sustain strategic coherence and iterative correction over experimental cycles spanning days or weeks. While Large Language Models (LLMs) have demonstrated prowess in short-horizon reasoning, they are easily overwhelmed by execution details in the high-dimensional, delayed-feedback environments of real-world research, failing to consolidate sparse feedback into coherent long-term guidance. Here, we present ML-Master 2.0, an autonomous agent that masters ultra-long-horizon machine learning engineering (MLE) which is a representative microcosm of scientific discovery. By reframing context management as a process of cognitive accumulation, our approach introduces Hierarchical Cognitive Caching (HCC), a multi-tiered architecture inspired by computer systems that enables the structural differentiation of experience over time. By dynamically distilling transient execution traces into stable knowledge and cross-task wisdom, HCC allows agents to decouple immediate execution from long-term experimental strategy, effectively overcoming the scaling limits of static context windows. In evaluations on OpenAI's MLE-Bench under 24-hour budgets, ML-Master 2.0 achieves a state-of-the-art medal rate of 56.44%. Our findings demonstrate that ultra-long-horizon autonomy provides a scalable blueprint for AI capable of autonomous exploration beyond human-precedent complexities.

From Sketch to Fresco: Efficient Diffusion Transformer with Progressive Resolution

Diffusion Transformers achieve impressive generative quality but remain computationally expensive due to iterative sampling. Recently, dynamic resolution sampling has emerged as a promising acceleration technique by reducing the resolution of early sampling steps. However, existing methods rely on heuristic re-noising at every resolution transition, injecting noise that breaks cross-stage consistency and forces the model to relearn global structure. In addition, these methods indiscriminately upsample the entire latent space at once without checking which regions have actually converged, causing accumulated errors, and visible artifacts. Therefore, we propose \textbf{Fresco}, a dynamic resolution framework that unifies re-noise and global structure across stages with progressive upsampling, preserving both the efficiency of low-resolution drafting and the fidelity of high-resolution refinement, with all stages aligned toward the same final target. Fresco achieves near-lossless acceleration across diverse domains and models, including 10$\times$ speedup on FLUX, and 5$\times$ on HunyuanVideo, while remaining orthogonal to distillation, quantization and feature caching, reaching 22$\times$ speedup when combined with distilled models. Our code is in supplementary material and will be released on Github.

Forecast the Principal, Stabilize the Residual: Subspace-Aware Feature Caching for Efficient Diffusion Transformers

Diffusion Transformer (DiT) models have achieved unprecedented quality in image and video generation, yet their iterative sampling process remains computationally prohibitive. To accelerate inference, feature caching methods have emerged by reusing intermediate representations across timesteps. However, existing caching approaches treat all feature components uniformly. We reveal that DiT feature spaces contain distinct principal and residual subspaces with divergent temporal behavior: the principal subspace evolves smoothly and predictably, while the residual subspace exhibits volatile, low-energy oscillations that resist accurate prediction. Building on this insight, we propose SVD-Cache, a subspace-aware caching framework that decomposes diffusion features via Singular Value Decomposition (SVD), applies exponential moving average (EMA) prediction to the dominant low-rank components, and directly reuses the residual subspace. Extensive experiments demonstrate that SVD-Cache achieves near-lossless across diverse models and methods, including 5.55$\times$ speedup on FLUX and HunyuanVideo, and compatibility with model acceleration techniques including distillation, quantization and sparse attention. Our code is in supplementary material and will be released on Github.

DVD: A Robust Method for Detecting Variant Contamination in Large Language Model Evaluation

Evaluating large language models (LLMs) is increasingly confounded by \emph{variant contamination}: the training corpus contains semantically equivalent yet lexically or syntactically altered versions of test items. Unlike verbatim leakage, these paraphrased or structurally transformed variants evade existing detectors based on sampling consistency or perplexity, thereby inflating benchmark scores via memorization rather than genuine reasoning. We formalize this problem and introduce \textbf{DVD} (\textbf{D}etection via \textbf{V}ariance of generation \textbf{D}istribution), a single-sample detector that models the local output distribution induced by temperature sampling. Our key insight is that contaminated items trigger alternation between a \emph{memory-adherence} state and a \emph{perturbation-drift} state, yielding abnormally high variance in the synthetic difficulty of low-probability tokens; uncontaminated items remain in drift with comparatively smooth variance. We construct the first benchmark for variant contamination across two domains Omni-MATH and SuperGPQA by generating and filtering semantically equivalent variants, and simulate contamination via fine-tuning models of different scales and architectures (Qwen2.5 and Llama3.1). Across datasets and models, \textbf{DVD} consistently outperforms perplexity-based, Min-$k$\%++, edit-distance (CDD), and embedding-similarity baselines, while exhibiting strong robustness to hyperparameters. Our results establish variance of the generation distribution as a principled and practical fingerprint for detecting variant contamination in LLM evaluation.

Deploy-Master: Automating the Deployment of 50,000+ Agent-Ready Scientific Tools in One Day

Open-source scientific software is abundant, yet most tools remain difficult to compile, configure, and reuse, sustaining a small-workshop mode of scientific computing. This deployment bottleneck limits reproducibility, large-scale evaluation, and the practical integration of scientific tools into modern AI-for-Science (AI4S) and agentic workflows. We present Deploy-Master, a one-stop agentic workflow for large-scale tool discovery, build specification inference, execution-based validation, and publication. Guided by a taxonomy spanning 90+ scientific and engineering domains, our discovery stage starts from a recall-oriented pool of over 500,000 public repositories and progressively filters it to 52,550 executable tool candidates under license- and quality-aware criteria. Deploy-Master transforms heterogeneous open-source repositories into runnable, containerized capabilities grounded in execution rather than documentation claims. In a single day, we performed 52,550 build attempts and constructed reproducible runtime environments for 50,112 scientific tools. Each successful tool is validated by a minimal executable command and registered in SciencePedia for search and reuse, enabling direct human use and optional agent-based invocation. Beyond delivering runnable tools, we report a deployment trace at the scale of 50,000 tools, characterizing throughput, cost profiles, failure surfaces, and specification uncertainty that become visible only at scale. These results explain why scientific software remains difficult to operationalize and motivate shared, observable execution substrates as a foundation for scalable AI4S and agentic science.

RxnBench: A Multimodal Benchmark for Evaluating Large Language Models on Chemical Reaction Understanding from Scientific Literature

The integration of Multimodal Large Language Models (MLLMs) into chemistry promises to revolutionize scientific discovery, yet their ability to comprehend the dense, graphical language of reactions within authentic literature remains underexplored. Here, we introduce RxnBench, a multi-tiered benchmark designed to rigorously evaluate MLLMs on chemical reaction understanding from scientific PDFs. RxnBench comprises two tasks: Single-Figure QA (SF-QA), which tests fine-grained visual perception and mechanistic reasoning using 1,525 questions derived from 305 curated reaction schemes, and Full-Document QA (FD-QA), which challenges models to synthesize information from 108 articles, requiring cross-modal integration of text, schemes, and tables. Our evaluation of MLLMs reveals a critical capability gap: while models excel at extracting explicit text, they struggle with deep chemical logic and precise structural recognition. Notably, models with inference-time reasoning significantly outperform standard architectures, yet none achieve 50\% accuracy on FD-QA. These findings underscore the urgent need for domain-specific visual encoders and stronger reasoning engines to advance autonomous AI chemists.

Bohrium + SciMaster: Building the Infrastructure and Ecosystem for Agentic Science at Scale

AI agents are emerging as a practical way to run multi-step scientific workflows that interleave reasoning with tool use and verification, pointing to a shift from isolated AI-assisted steps toward \emph{agentic science at scale}. This shift is increasingly feasible, as scientific tools and models can be invoked through stable interfaces and verified with recorded execution traces, and increasingly necessary, as AI accelerates scientific output and stresses the peer-review and publication pipeline, raising the bar for traceability and credible evaluation. However, scaling agentic science remains difficult: workflows are hard to observe and reproduce; many tools and laboratory systems are not agent-ready; execution is hard to trace and govern; and prototype AI Scientist systems are often bespoke, limiting reuse and systematic improvement from real workflow signals. We argue that scaling agentic science requires an infrastructure-and-ecosystem approach, instantiated in Bohrium+SciMaster. Bohrium acts as a managed, traceable hub for AI4S assets -- akin to a HuggingFace of AI for Science -- that turns diverse scientific data, software, compute, and laboratory systems into agent-ready capabilities. SciMaster orchestrates these capabilities into long-horizon scientific workflows, on which scientific agents can be composed and executed. Between infrastructure and orchestration, a \emph{scientific intelligence substrate} organizes reusable models, knowledge, and components into executable building blocks for workflow reasoning and action, enabling composition, auditability, and improvement through use. We demonstrate this stack with eleven representative master agents in real workflows, achieving orders-of-magnitude reductions in end-to-end scientific cycle time and generating execution-grounded signals from real workloads at multi-million scale.

PhysMaster: Building an Autonomous AI Physicist for Theoretical and Computational Physics Research

Advances in LLMs have produced agents with knowledge and operational capabilities comparable to human scientists, suggesting potential to assist, accelerate, and automate research. However, existing studies mainly evaluate such systems on well-defined benchmarks or general tasks like literature retrieval, limiting their end-to-end problem-solving ability in open scientific scenarios. This is particularly true in physics, which is abstract, mathematically intensive, and requires integrating analytical reasoning with code-based computation. To address this, we propose PhysMaster, an LLM-based agent functioning as an autonomous theoretical and computational physicist. PhysMaster couples absract reasoning with numerical computation and leverages LANDAU, the Layered Academic Data Universe, which preserves retrieved literature, curated prior knowledge, and validated methodological traces, enhancing decision reliability and stability. It also employs an adaptive exploration strategy balancing efficiency and open-ended exploration, enabling robust performance in ultra-long-horizon tasks. We evaluate PhysMaster on problems from high-energy theory, condensed matter theory to astrophysics, including: (i) acceleration, compressing labor-intensive research from months to hours; (ii) automation, autonomously executing hypothesis-driven loops ; and (iii) autonomous discovery, independently exploring open problems.