ScribFormer: Transformer Makes CNN Work Better for Scribble-based Medical Image Segmentation

Most recent scribble-supervised segmentation methods commonly adopt a CNN framework with an encoder-decoder architecture. Despite its multiple benefits, this framework generally can only capture small-range feature dependency for the convolutional layer with the local receptive field, which makes it difficult to learn global shape information from the limited information provided by scribble annotations. To address this issue, this paper proposes a new CNN-Transformer hybrid solution for scribble-supervised medical image segmentation called ScribFormer. The proposed ScribFormer model has a triple-branch structure, i.e., the hybrid of a CNN branch, a Transformer branch, and an attention-guided class activation map (ACAM) branch. Specifically, the CNN branch collaborates with the Transformer branch to fuse the local features learned from CNN with the global representations obtained from Transformer, which can effectively overcome limitations of existing scribble-supervised segmentation methods. Furthermore, the ACAM branch assists in unifying the shallow convolution features and the deep convolution features to improve model's performance further. Extensive experiments on two public datasets and one private dataset show that our ScribFormer has superior performance over the state-of-the-art scribble-supervised segmentation methods, and achieves even better results than the fully-supervised segmentation methods. The code is released at https://github.com/HUANGLIZI/ScribFormer.

Quantified Task Misalignment to Inform PEFT: An Exploration of Domain Generalization and Catastrophic Forgetting in CLIP

Foundations models are presented as generalists that often perform well over a myriad of tasks. Fine-tuning these models, even on limited data, provides an additional boost in task-specific performance but often at the cost of their wider generalization, an effect termed catastrophic forgetting. In this paper, we analyze the relation between task difficulty in the CLIP model and the performance of several simple parameter-efficient fine-tuning methods through the lens of domain generalization and catastrophic forgetting. We provide evidence that the silhouette score of the zero-shot image and text embeddings is a better measure of task difficulty than the average cosine similarity of correct image/label embeddings, and discuss observable relationships between task difficulty, fine-tuning method, domain generalization, and catastrophic forgetting. Additionally, the averaged results across tasks and performance measures demonstrate that a simplified method that trains only a subset of attention weights, which we call A-CLIP, yields a balance between domain generalization and catastrophic forgetting.

Switch EMA: A Free Lunch for Better Flatness and Sharpness

Exponential Moving Average (EMA) is a widely used weight averaging (WA) regularization to learn flat optima for better generalizations without extra cost in deep neural network (DNN) optimization. Despite achieving better flatness, existing WA methods might fall into worse final performances or require extra test-time computations. This work unveils the full potential of EMA with a single line of modification, i.e., switching the EMA parameters to the original model after each epoch, dubbed as Switch EMA (SEMA). From both theoretical and empirical aspects, we demonstrate that SEMA can help DNNs to reach generalization optima that better trade-off between flatness and sharpness. To verify the effectiveness of SEMA, we conduct comparison experiments with discriminative, generative, and regression tasks on vision and language datasets, including image classification, self-supervised learning, object detection and segmentation, image generation, video prediction, attribute regression, and language modeling. Comprehensive results with popular optimizers and networks show that SEMA is a free lunch for DNN training by improving performances and boosting convergence speeds.

An advanced data fabric architecture leveraging homomorphic encryption and federated learning

Data fabric is an automated and AI-driven data fusion approach to accomplish data management unification without moving data to a centralized location for solving complex data problems. In a Federated learning architecture, the global model is trained based on the learned parameters of several local models that eliminate the necessity of moving data to a centralized repository for machine learning. This paper introduces a secure approach for medical image analysis using federated learning and partially homomorphic encryption within a distributed data fabric architecture. With this method, multiple parties can collaborate in training a machine-learning model without exchanging raw data but using the learned or fused features. The approach complies with laws and regulations such as HIPAA and GDPR, ensuring the privacy and security of the data. The study demonstrates the method's effectiveness through a case study on pituitary tumor classification, achieving a significant level of accuracy. However, the primary focus of the study is on the development and evaluation of federated learning and partially homomorphic encryption as tools for secure medical image analysis. The results highlight the potential of these techniques to be applied to other privacy-sensitive domains and contribute to the growing body of research on secure and privacy-preserving machine learning.

GaMeS: Mesh-Based Adapting and Modification of Gaussian Splatting

Recently, a range of neural network-based methods for image rendering have been introduced. One such widely-researched neural radiance field (NeRF) relies on a neural network to represent 3D scenes, allowing for realistic view synthesis from a small number of 2D images. However, most NeRF models are constrained by long training and inference times. In comparison, Gaussian Splatting (GS) is a novel, state-of-the-art technique for rendering points in a 3D scene by approximating their contribution to image pixels through Gaussian distributions, warranting fast training and swift, real-time rendering. A drawback of GS is the absence of a well-defined approach for its conditioning due to the necessity to condition several hundred thousand Gaussian components. To solve this, we introduce the Gaussian Mesh Splatting (GaMeS) model, which allows modification of Gaussian components in a similar way as meshes. We parameterize each Gaussian component by the vertices of the mesh face. Furthermore, our model needs mesh initialization on input or estimated mesh during training. We also define Gaussian splats solely based on their location on the mesh, allowing for automatic adjustments in position, scale, and rotation during animation. As a result, we obtain a real-time rendering of editable GS.

Unrecognizable Yet Identifiable: Image Distortion with Preserved Embeddings

In the realm of security applications, biometric authentication systems play a crucial role, yet one often encounters challenges concerning privacy and security while developing one. One of the most fundamental challenges lies in avoiding storing biometrics directly in the storage but still achieving decently high accuracy. Addressing this issue, we contribute to both artificial intelligence and engineering fields. We introduce an innovative image distortion technique that effectively renders facial images unrecognizable to the eye while maintaining their identifiability by neural network models. From the theoretical perspective, we explore how reliable state-of-the-art biometrics recognition neural networks are by checking the maximal degree of image distortion, which leaves the predicted identity unchanged. On the other hand, applying this technique demonstrates a practical solution to the engineering challenge of balancing security, precision, and performance in biometric authentication systems. Through experimenting on the widely used datasets, we assess the effectiveness of our method in preserving AI feature representation and distorting relative to conventional metrics. We also compare our method with previously used approaches.

Vision-Informed Flow Image Super-Resolution with Quaternion Spatial Modeling and Dynamic Flow Convolution

Flow image super-resolution (FISR) aims at recovering high-resolution turbulent velocity fields from low-resolution flow images. Existing FISR methods mainly process the flow images in natural image patterns, while the critical and distinct flow visual properties are rarely considered. This negligence would cause the significant domain gap between flow and natural images to severely hamper the accurate perception of flow turbulence, thereby undermining super-resolution performance. To tackle this dilemma, we comprehensively consider the flow visual properties, including the unique flow imaging principle and morphological information, and propose the first flow visual property-informed FISR algorithm. Particularly, different from natural images that are constructed by independent RGB channels in the light field, flow images build on the orthogonal UVW velocities in the flow field. To empower the FISR network with an awareness of the flow imaging principle, we propose quaternion spatial modeling to model this orthogonal spatial relationship for improved FISR. Moreover, due to viscosity and surface tension characteristics, fluids often exhibit a droplet-like morphology in flow images. Inspired by this morphological property, we design the dynamic flow convolution to effectively mine the morphological information to enhance FISR. Extensive experiments on the newly acquired flow image datasets demonstrate the state-of-the-art performance of our method. Code and data will be made available.

BioFusionNet: Deep Learning-Based Survival Risk Stratification in ER+ Breast Cancer Through Multifeature and Multimodal Data Fusion

Breast cancer is a significant health concern affecting millions of women worldwide. Accurate survival risk stratification plays a crucial role in guiding personalised treatment decisions and improving patient outcomes. Here we present BioFusionNet, a deep learning framework that fuses image-derived features with genetic and clinical data to achieve a holistic patient profile and perform survival risk stratification of ER+ breast cancer patients. We employ multiple self-supervised feature extractors, namely DINO and MoCoV3, pretrained on histopathology patches to capture detailed histopathological image features. We then utilise a variational autoencoder (VAE) to fuse these features, and harness the latent space of the VAE to feed into a self-attention network, generating patient-level features. Next, we develop a co-dual-cross-attention mechanism to combine the histopathological features with genetic data, enabling the model to capture the interplay between them. Additionally, clinical data is incorporated using a feed-forward network (FFN), further enhancing predictive performance and achieving comprehensive multimodal feature integration. Furthermore, we introduce a weighted Cox loss function, specifically designed to handle imbalanced survival data, which is a common challenge in the field. The proposed model achieves a mean concordance index (C-index) of 0.77 and a time-dependent area under the curve (AUC) of 0.84, outperforming state-of-the-art methods. It predicts risk (high versus low) with prognostic significance for overall survival (OS) in univariate analysis (HR=2.99, 95% CI: 1.88--4.78, p<0.005), and maintains independent significance in multivariate analysis incorporating standard clinicopathological variables (HR=2.91, 95% CI: 1.80--4.68, p<0.005). The proposed method not only improves model performance but also addresses a critical gap in handling imbalanced data.

Taiyi-Diffusion-XL: Advancing Bilingual Text-to-Image Generation with Large Vision-Language Model Support

Recent advancements in text-to-image models have significantly enhanced image generation capabilities, yet a notable gap of open-source models persists in bilingual or Chinese language support. To address this need, we present Taiyi-Diffusion-XL, a new Chinese and English bilingual text-to-image model which is developed by extending the capabilities of CLIP and Stable-Diffusion-XL through a process of bilingual continuous pre-training. This approach includes the efficient expansion of vocabulary by integrating the most frequently used Chinese characters into CLIP's tokenizer and embedding layers, coupled with an absolute position encoding expansion. Additionally, we enrich text prompts by large vision-language model, leading to better images captions and possess higher visual quality. These enhancements are subsequently applied to downstream text-to-image models. Our empirical results indicate that the developed CLIP model excels in bilingual image-text retrieval.Furthermore, the bilingual image generation capabilities of Taiyi-Diffusion-XL surpass previous models. This research leads to the development and open-sourcing of the Taiyi-Diffusion-XL model, representing a notable advancement in the field of image generation, particularly for Chinese language applications. This contribution is a step forward in addressing the need for more diverse language support in multimodal research. The model and demonstration are made publicly available at \href{https://huggingface.co/IDEA-CCNL/Taiyi-Stable-Diffusion-XL-3.5B/}{this https URL}, fostering further research and collaboration in this domain.

Continuous-Multiple Image Outpainting in One-Step via Positional Query and A Diffusion-based Approach

Image outpainting aims to generate the content of an input sub-image beyond its original boundaries. It is an important task in content generation yet remains an open problem for generative models. This paper pushes the technical frontier of image outpainting in two directions that have not been resolved in literature: 1) outpainting with arbitrary and continuous multiples (without restriction), and 2) outpainting in a single step (even for large expansion multiples). Moreover, we develop a method that does not depend on a pre-trained backbone network, which is in contrast commonly required by the previous SOTA outpainting methods. The arbitrary multiple outpainting is achieved by utilizing randomly cropped views from the same image during training to capture arbitrary relative positional information. Specifically, by feeding one view and positional embeddings as queries, we can reconstruct another view. At inference, we generate images with arbitrary expansion multiples by inputting an anchor image and its corresponding positional embeddings. The one-step outpainting ability here is particularly noteworthy in contrast to previous methods that need to be performed for $N$ times to obtain a final multiple which is $N$ times of its basic and fixed multiple. We evaluate the proposed approach (called PQDiff as we adopt a diffusion-based generator as our embodiment, under our proposed \textbf{P}ositional \textbf{Q}uery scheme) on public benchmarks, demonstrating its superior performance over state-of-the-art approaches. Specifically, PQDiff achieves state-of-the-art FID scores on the Scenery (\textbf{21.512}), Building Facades (\textbf{25.310}), and WikiArts (\textbf{36.212}) datasets. Furthermore, under the 2.25x, 5x and 11.7x outpainting settings, PQDiff only takes \textbf{40.6\%}, \textbf{20.3\%} and \textbf{10.2\%} of the time of the benchmark state-of-the-art (SOTA) method.