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Stan Z. Li

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AdaNovo: Adaptive \emph{De Novo} Peptide Sequencing with Conditional Mutual Information

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Mar 15, 2024
Jun Xia, Shaorong Chen, Jingbo Zhou, Tianze Ling, Wenjie Du, Sizhe Liu, Stan Z. Li

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A Teacher-Free Graph Knowledge Distillation Framework with Dual Self-Distillation

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Mar 06, 2024
Lirong Wu, Haitao Lin, Zhangyang Gao, Guojiang Zhao, Stan Z. Li

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Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks

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Mar 03, 2024
Tianyu Fan, Lirong Wu, Yufei Huang, Haitao Lin, Cheng Tan, Zhangyang Gao, Stan Z. Li

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Enhancing Protein Predictive Models via Proteins Data Augmentation: A Benchmark and New Directions

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Mar 01, 2024
Rui Sun, Lirong Wu, Haitao Lin, Yufei Huang, Stan Z. Li

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FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics

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Feb 24, 2024
ChenRui Duan, Zelin Zang, Yongjie Xu, Hang He, Zihan Liu, Zijia Song, Ju-Sheng Zheng, Stan Z. Li

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MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding

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Feb 22, 2024
Lirong Wu, Yijun Tian, Yufei Huang, Siyuan Li, Haitao Lin, Nitesh V Chawla, Stan Z. Li

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Switch EMA: A Free Lunch for Better Flatness and Sharpness

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Feb 14, 2024
Siyuan Li, Zicheng Liu, Juanxi Tian, Ge Wang, Zedong Wang, Weiyang Jin, Di Wu, Cheng Tan, Tao Lin, Yang Liu, Baigui Sun, Stan Z. Li

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PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction

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Feb 13, 2024
Lirong Wu, Yufei Huang, Cheng Tan, Zhangyang Gao, Bozhen Hu, Haitao Lin, Zicheng Liu, Stan Z. Li

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A Graph is Worth $K$ Words: Euclideanizing Graph using Pure Transformer

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Feb 04, 2024
Zhangyang Gao, Daize Dong, Cheng Tan, Jun Xia, Bozhen Hu, Stan Z. Li

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DCS-Net: Pioneering Leakage-Free Point Cloud Pretraining Framework with Global Insights

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Feb 03, 2024
Zhe Li, Zhangyang Gao, Cheng Tan, Stan Z. Li, Laurence T. Yang

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