Uncertainty-Aware Complex Scientific Table Data Extraction

Table structure recognition (TSR) and optical character recognition (OCR) play crucial roles in extracting structured data from tables in scientific documents. However, existing extraction frameworks built on top of TSR and OCR methods often fail to quantify the uncertainties of extracted results. To obtain highly accurate data for scientific domains, all extracted data must be manually verified, which can be time-consuming and labor-intensive. We propose a framework that performs uncertainty-aware data extraction for complex scientific tables, built on conformal prediction, a model-agnostic method for uncertainty quantification (UQ). We explored various uncertainty scoring methods to aggregate the uncertainties introduced by TSR and OCR. We rigorously evaluated the framework using a standard benchmark and an in-house dataset consisting of complex scientific tables in six scientific domains. The results demonstrate the effectiveness of using UQ for extraction error detection, and by manually verifying only 47\% of extraction results, the data quality can be improved by 30\%. Our work quantitatively demonstrates the role of UQ with the potential of improving the efficiency in the human-machine cooperation process to obtain scientifically usable data from complex tables in scientific documents. All code and data are available on GitHub at https://github.com/lamps-lab/TSR-OCR-UQ/tree/main.

Topology-aware Neural Flux Prediction Guided by Physics

Graph Neural Networks (GNNs) often struggle in preserving high-frequency components of nodal signals when dealing with directed graphs. Such components are crucial for modeling flow dynamics, without which a traditional GNN tends to treat a graph with forward and reverse topologies equal.To make GNNs sensitive to those high-frequency components thereby being capable to capture detailed topological differences, this paper proposes a novel framework that combines 1) explicit difference matrices that model directional gradients and 2) implicit physical constraints that enforce messages passing within GNNs to be consistent with natural laws. Evaluations on two real-world directed graph data, namely, water flux network and urban traffic flow network, demonstrate the effectiveness of our proposal.

Topological Structure Learning Should Be A Research Priority for LLM-Based Multi-Agent Systems

Large Language Model-based Multi-Agent Systems (MASs) have emerged as a powerful paradigm for tackling complex tasks through collaborative intelligence. Nevertheless, the question of how agents should be structurally organized for optimal cooperation remains largely unexplored. In this position paper, we aim to gently redirect the focus of the MAS research community toward this critical dimension: develop topology-aware MASs for specific tasks. Specifically, the system consists of three core components - agents, communication links, and communication patterns - that collectively shape its coordination performance and efficiency. To this end, we introduce a systematic, three-stage framework: agent selection, structure profiling, and topology synthesis. Each stage would trigger new research opportunities in areas such as language models, reinforcement learning, graph learning, and generative modeling; together, they could unleash the full potential of MASs in complicated real-world applications. Then, we discuss the potential challenges and opportunities in the evaluation of multiple systems. We hope our perspective and framework can offer critical new insights in the era of agentic AI.

Multi-Modal Foundation Models for Computational Pathology: A Survey

Foundation models have emerged as a powerful paradigm in computational pathology (CPath), enabling scalable and generalizable analysis of histopathological images. While early developments centered on uni-modal models trained solely on visual data, recent advances have highlighted the promise of multi-modal foundation models that integrate heterogeneous data sources such as textual reports, structured domain knowledge, and molecular profiles. In this survey, we provide a comprehensive and up-to-date review of multi-modal foundation models in CPath, with a particular focus on models built upon hematoxylin and eosin (H&E) stained whole slide images (WSIs) and tile-level representations. We categorize 32 state-of-the-art multi-modal foundation models into three major paradigms: vision-language, vision-knowledge graph, and vision-gene expression. We further divide vision-language models into non-LLM-based and LLM-based approaches. Additionally, we analyze 28 available multi-modal datasets tailored for pathology, grouped into image-text pairs, instruction datasets, and image-other modality pairs. Our survey also presents a taxonomy of downstream tasks, highlights training and evaluation strategies, and identifies key challenges and future directions. We aim for this survey to serve as a valuable resource for researchers and practitioners working at the intersection of pathology and AI.

Enhancing Visual Forced Alignment with Local Context-Aware Feature Extraction and Multi-Task Learning

This paper introduces a novel approach to Visual Forced Alignment (VFA), aiming to accurately synchronize utterances with corresponding lip movements, without relying on audio cues. We propose a novel VFA approach that integrates a local context-aware feature extractor and employs multi-task learning to refine both global and local context features, enhancing sensitivity to subtle lip movements for precise word-level and phoneme-level alignment. Incorporating the improved Viterbi algorithm for post-processing, our method significantly reduces misalignments. Experimental results show our approach outperforms existing methods, achieving a 6% accuracy improvement at the word-level and 27% improvement at the phoneme-level in LRS2 dataset. These improvements offer new potential for applications in automatically subtitling TV shows or user-generated content platforms like TikTok and YouTube Shorts.

How to Mitigate Information Loss in Knowledge Graphs for GraphRAG: Leveraging Triple Context Restoration and Query-Driven Feedback

Knowledge Graph (KG)-augmented Large Language Models (LLMs) have recently propelled significant advances in complex reasoning tasks, thanks to their broad domain knowledge and contextual awareness. Unfortunately, current methods often assume KGs to be complete, which is impractical given the inherent limitations of KG construction and the potential loss of contextual cues when converting unstructured text into entity-relation triples. In response, this paper proposes the Triple Context Restoration and Query-driven Feedback (TCR-QF) framework, which reconstructs the textual context underlying each triple to mitigate information loss, while dynamically refining the KG structure by iteratively incorporating query-relevant missing knowledge. Experiments on five benchmark question-answering datasets substantiate the effectiveness of TCR-QF in KG and LLM integration, where itachieves a 29.1% improvement in Exact Match and a 15.5% improvement in F1 over its state-of-the-art GraphRAG competitors.

EmotiCrafter: Text-to-Emotional-Image Generation based on Valence-Arousal Model

Recent research shows that emotions can enhance users' cognition and influence information communication. While research on visual emotion analysis is extensive, limited work has been done on helping users generate emotionally rich image content. Existing work on emotional image generation relies on discrete emotion categories, making it challenging to capture complex and subtle emotional nuances accurately. Additionally, these methods struggle to control the specific content of generated images based on text prompts. In this work, we introduce the new task of continuous emotional image content generation (C-EICG) and present EmotiCrafter, an emotional image generation model that generates images based on text prompts and Valence-Arousal values. Specifically, we propose a novel emotion-embedding mapping network that embeds Valence-Arousal values into textual features, enabling the capture of specific emotions in alignment with intended input prompts. Additionally, we introduce a loss function to enhance emotion expression. The experimental results show that our method effectively generates images representing specific emotions with the desired content and outperforms existing techniques.

Differential Evolution Integrated Hybrid Deep Learning Model for Object Detection in Pre-made Dishes

With the continuous improvement of people's living standards and fast-paced working conditions, pre-made dishes are becoming increasingly popular among families and restaurants due to their advantages of time-saving, convenience, variety, cost-effectiveness, standard quality, etc. Object detection is a key technology for selecting ingredients and evaluating the quality of dishes in the pre-made dishes industry. To date, many object detection approaches have been proposed. However, accurate object detection of pre-made dishes is extremely difficult because of overlapping occlusion of ingredients, similarity of ingredients, and insufficient light in the processing environment. As a result, the recognition scene is relatively complex and thus leads to poor object detection by a single model. To address this issue, this paper proposes a Differential Evolution Integrated Hybrid Deep Learning (DEIHDL) model. The main idea of DEIHDL is three-fold: 1) three YOLO-based and transformer-based base models are developed respectively to increase diversity for detecting objects of pre-made dishes, 2) the three base models are integrated by differential evolution optimized self-adjusting weights, and 3) weighted boxes fusion strategy is employed to score the confidence of the three base models during the integration. As such, DEIHDL possesses the multi-performance originating from the three base models to achieve accurate object detection in complex pre-made dish scenes. Extensive experiments on real datasets demonstrate that the proposed DEIHDL model significantly outperforms the base models in detecting objects of pre-made dishes.

End-to-end Graph Learning Approach for Cognitive Diagnosis of Student Tutorial

Cognitive diagnosis (CD) utilizes students' existing studying records to estimate their mastery of unknown knowledge concepts, which is vital for evaluating their learning abilities. Accurate CD is extremely challenging because CD is associated with complex relationships and mechanisms among students, knowledge concepts, studying records, etc. However, existing approaches loosely consider these relationships and mechanisms by a non-end-to-end learning framework, resulting in sub-optimal feature extractions and fusions for CD. Different from them, this paper innovatively proposes an End-to-end Graph Neural Networks-based Cognitive Diagnosis (EGNN-CD) model. EGNN-CD consists of three main parts: knowledge concept network (KCN), graph neural networks-based feature extraction (GNNFE), and cognitive ability prediction (CAP). First, KCN constructs CD-related interaction by comprehensively extracting physical information from students, exercises, and knowledge concepts. Second, a four-channel GNNFE is designed to extract high-order and individual features from the constructed KCN. Finally, CAP employs a multi-layer perceptron to fuse the extracted features to predict students' learning abilities in an end-to-end learning way. With such designs, the feature extractions and fusions are guaranteed to be comprehensive and optimal for CD. Extensive experiments on three real datasets demonstrate that our EGNN-CD achieves significantly higher accuracy than state-of-the-art models in CD.

Uncertainty Quantification in Table Structure Recognition

Quantifying uncertainties for machine learning models is a critical step to reduce human verification effort by detecting predictions with low confidence. This paper proposes a method for uncertainty quantification (UQ) of table structure recognition (TSR). The proposed UQ method is built upon a mixture-of-expert approach termed Test-Time Augmentation (TTA). Our key idea is to enrich and diversify the table representations, to spotlight the cells with high recognition uncertainties. To evaluate the effectiveness, we proposed two heuristics to differentiate highly uncertain cells from normal cells, namely, masking and cell complexity quantification. Masking involves varying the pixel intensity to deem the detection uncertainty. Cell complexity quantification gauges the uncertainty of each cell by its topological relation with neighboring cells. The evaluation results based on standard benchmark datasets demonstrate that the proposed method is effective in quantifying uncertainty in TSR models. To our best knowledge, this study is the first of its kind to enable UQ in TSR tasks. Our code and data are available at: https://github.com/lamps-lab/UQTTA.git.