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Jianzhu Ma

Institute for Artificial Intelligence, Peking University, Beijing, 100871, China

Equivariant Point Cloud Analysis via Learning Orientations for Message Passing


Mar 28, 2022
Shitong Luo, Jiahan Li, Jiaqi Guan, Yufeng Su, Chaoran Cheng, Jian Peng, Jianzhu Ma

* Accepted to CVPR 2022 

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Provable Constrained Stochastic Convex Optimization with XOR-Projected Gradient Descent


Mar 22, 2022
Fan Ding, Yijie Wang, Jianzhu Ma, Yexiang Xue


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A 3D Molecule Generative Model for Structure-Based Drug Design


Mar 20, 2022
Shitong Luo, Jiaqi Guan, Jianzhu Ma, Jian Peng

* Accepted to NeurIPS 2021 

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Directed Weight Neural Networks for Protein Structure Representation Learning


Jan 28, 2022
Jiahan Li, Shitong Luo, Congyue Deng, Chaoran Cheng, Jiaqi Guan, Leonidas Guibas, Jian Peng, Jianzhu Ma


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Contrastive Cycle Adversarial Autoencoders for Single-cell Multi-omics Alignment and Integration


Dec 14, 2021
Xuesong Wang, Zhihang Hu, Tingyang Yu, Ruijie Wang, Yumeng Wei, Juan Shu, Jianzhu Ma, Yu Li


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Fast Projection onto the Capped Simplex with Applications to Sparse Regression in Bioinformatics


Oct 26, 2021
Andersen Ang, Jianzhu Ma, Nianjun Liu, Kun Huang, Yijie Wang

* 12 pages, 5 figures 

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Fast Projection onto the Capped Simplex withApplications to Sparse Regression in Bioinformatics


Oct 19, 2021
Andersen Ang, Jianzhu Ma, Nianjun Liu, Kun Huang, Yijie Wang

* 12 pages, 5 figures 

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Breaking the Limit of Graph Neural Networks by Improving the Assortativity of Graphs with Local Mixing Patterns


Jun 11, 2021
Susheel Suresh, Vinith Budde, Jennifer Neville, Pan Li, Jianzhu Ma

* published in KDD 2021; 11 pages; 

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Neural Higher-order Pattern (Motif) Prediction in Temporal Networks


Jun 10, 2021
Yunyu Liu, Jianzhu Ma, Pan Li


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Quantifying spatial homogeneity of urban road networks via graph neural networks


Jan 01, 2021
Jiawei Xue, Nan Jiang, Senwei Liang, Qiyuan Pang, Satish V. Ukkusuri, Jianzhu Ma

* 22 pages, 5 figures 

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Protein secondary structure prediction using deep convolutional neural fields


Dec 11, 2015
Sheng Wang, Jian Peng, Jianzhu Ma, Jinbo Xu


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Protein Structure Prediction by Protein Alignments


Oct 19, 2015
Jianzhu Ma

* arXiv admin note: substantial text overlap with arXiv:1306.4420 by other authors 

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Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning


Apr 08, 2015
Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu


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MRFalign: Protein Homology Detection through Alignment of Markov Random Fields


Jan 15, 2014
Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu

* Accepted by both RECOMB 2014 and PLOS Computational Biology 

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