UC Berkeley/LBNL/ICSI
Abstract:Tools from random matrix theory have become central to deep learning theory, using spectral information to provide mechanisms for modeling generalization, robustness, scaling, and failure modes. While often capable of modeling empirical behavior, practical computations are limited by matrix size, often imposing a restriction to models that are too small to be realistic. This motivates the inference of properties of larger models from the behavior of smaller ones. Free decompression (FD) is a recently proposed method for extrapolating spectral information across matrix sizes, but its utility is currently limited by strong assumptions that preclude its implementation on more realistic machine learning (ML) models. We use algebraic spectral curve theory to provide a general FD methodology for spectral densities whose Stieltjes transform satisfies an algebraic relation, a modeling assumption that is more likely to hold in practice. This recasts FD as an evolution along spectral curves which can be readily integrated. Our framework enables the expansion of spectral densities that have multiple or multi-modal bulks, that exist at multiple scales, and that contain atoms, all characteristic of real-world data and popular ML models. We demonstrate the efficacy of our framework on models of interest in modern ML, including Hessian and activation matrices associated with neural networks and large-scale diffusion models.
Abstract:Neural scaling laws, which in some domains can predict the performance of large neural networks as a function of model, data, and compute scale, are the cornerstone of building foundation models in Natural Language Processing and Computer Vision. We study neural scaling in Scientific Machine Learning, focusing on models for weather forecasting. To analyze scaling behavior in as simple a setting as possible, we adopt a minimal, scalable, general-purpose Swin Transformer architecture, and we use continual training with constant learning rates and periodic cooldowns as an efficient training strategy. We show that models trained in this minimalist way follow predictable scaling trends and even outperform standard cosine learning rate schedules. Cooldown phases can be re-purposed to improve downstream performance, e.g., enabling accurate multi-step rollouts over longer forecast horizons as well as sharper predictions through spectral loss adjustments. We also systematically explore a wide range of model and dataset sizes under various compute budgets to construct IsoFLOP curves, and we identify compute-optimal training regimes. Extrapolating these trends to larger scales highlights potential performance limits, demonstrating that neural scaling can serve as an important diagnostic for efficient resource allocation. We open-source our code for reproducibility.
Abstract:In many time series forecasting settings, the target time series is accompanied by exogenous covariates, such as promotions and prices in retail demand; temperature in energy load; calendar and holiday indicators for traffic or sales; and grid load or fuel costs in electricity pricing. Ignoring these exogenous signals can substantially degrade forecasting accuracy, particularly when they drive spikes, discontinuities, or regime and phase changes in the target series. Most current time series foundation models (e.g., Chronos, Sundial, TimesFM, TimeMoE, TimeLLM, and LagLlama) ignore exogenous covariates and make forecasts solely from the numerical time series history, thereby limiting their performance. In this paper, we develop ApolloPFN, a prior-data fitted network (PFN) that is time-aware (unlike prior PFNs) and that natively incorporates exogenous covariates (unlike prior univariate forecasters). Our design introduces two major advances: (i) a synthetic data generation procedure tailored to resolve the failure modes that arise when tabular (non-temporal) PFNs are applied to time series; and (ii) time-aware architectural modifications that embed inductive biases needed to exploit the time series context. We demonstrate that ApolloPFN achieves state-of-the-art results across benchmarks, such as M5 and electric price forecasting, that contain exogenous information.
Abstract:General-purpose 3D chemical modeling encompasses molecules and materials, requiring both generative and predictive capabilities. However, most existing AI approaches are optimized for a single domain (molecules or materials) and a single task (generation or prediction), which limits representation sharing and transfer. We introduce Zatom-1, the first foundation model that unifies generative and predictive learning of 3D molecules and materials. Zatom-1 is a Transformer trained with a multimodal flow matching objective that jointly models discrete atom types and continuous 3D geometries. This approach supports scalable pretraining with predictable gains as model capacity increases, while enabling fast and stable sampling. We use joint generative pretraining as a universal initialization for downstream multi-task prediction of properties, energies, and forces. Empirically, Zatom-1 matches or outperforms specialized baselines on both generative and predictive benchmarks, while reducing the generative inference time by more than an order of magnitude. Our experiments demonstrate positive predictive transfer between chemical domains from joint generative pretraining: modeling materials during pretraining improves molecular property prediction accuracy.
Abstract:Test-time scaling has become a standard way to improve performance and boost reliability of neural network models. However, its behavior on agentic, multi-step tasks remains less well-understood: small per-step errors can compound over long horizons; and we find that naive policies that uniformly increase sampling show diminishing returns. In this work, we present CATTS, a simple technique for dynamically allocating compute for multi-step agents. We first conduct an empirical study of inference-time scaling for web agents. We find that uniformly increasing per-step compute quickly saturates in long-horizon environments. We then investigate stronger aggregation strategies, including an LLM-based Arbiter that can outperform naive voting, but that can overrule high-consensus decisions. We show that uncertainty statistics derived from the agent's own vote distribution (entropy and top-1/top-2 margin) correlate with downstream success and provide a practical signal for dynamic compute allocation. Based on these findings, we introduce Confidence-Aware Test-Time Scaling (CATTS), which uses vote-derived uncertainty to allocate compute only when decisions are genuinely contentious. CATTS improves performance on WebArena-Lite and GoBrowse by up to 9.1% over React while using up to 2.3x fewer tokens than uniform scaling, providing both efficiency gains and an interpretable decision rule.
Abstract:We introduce AutoSpec, a neural network framework for discovering iterative spectral algorithms for large-scale numerical linear algebra and numerical optimization. Our self-supervised models adapt to input operators using coarse spectral information (e.g., eigenvalue estimates and residual norms), and they predict recurrence coefficients for computing or applying a matrix polynomial tailored to a downstream task. The effectiveness of AutoSpec relies on three ingredients: an architecture whose inference pass implements short, executable numerical linear algebra recurrences; efficient training on small synthetic problems with transfer to large-scale real-world operators; and task-defined objectives that enforce the desired approximation or preconditioning behavior across the range of spectral profiles represented in the training set. We apply AutoSpec to discovering algorithms for representative numerical linear algebra tasks: accelerating matrix-function approximation; accelerating sparse linear solvers; and spectral filtering/preconditioning for eigenvalue computations. On real-world matrices, the learned procedures deliver orders-of-magnitude improvements in accuracy and/or reductions in iteration count, relative to basic baselines. We also find clear connections to classical theory: the induced polynomials often exhibit near-equiripple, near-minimax behavior characteristic of Chebyshev polynomials.
Abstract:Flow matching (FM) is increasingly used for time-series generation, but it is not well understood whether it learns a general dynamical structure or simply performs an effective "trajectory replay". We study this question by deriving the velocity field targeted by the empirical FM objective on sequential data, in the limit of perfect function approximation. For the Gaussian conditional paths commonly used in practice, we show that the implied sampler is an ODE whose dynamics constitutes a nonparametric, memory-augmented continuous-time dynamical system. The optimal field admits a closed-form expression as a similarity-weighted mixture of instantaneous velocities induced by past transitions, making the dataset dependence explicit and interpretable. This perspective positions neural FM models trained by stochastic optimization as parametric surrogates of an ideal nonparametric solution. Using the structure of the optimal field, we study sampling and approximation schemes that improve the efficiency and numerical robustness of ODE-based generation. On nonlinear dynamical system benchmarks, the resulting closed-form sampler yields strong probabilistic forecasts directly from historical transitions, without training.
Abstract:Loss landscapes are a powerful tool for understanding neural network optimization and generalization, yet traditional low-dimensional analyses often miss complex topological features. We present Landscaper, an open-source Python package for arbitrary-dimensional loss landscape analysis. Landscaper combines Hessian-based subspace construction with topological data analysis to reveal geometric structures such as basin hierarchy and connectivity. A key component is the Saddle-Minimum Average Distance (SMAD) for quantifying landscape smoothness. We demonstrate Landscaper's effectiveness across various architectures and tasks, including those involving pre-trained language models, showing that SMAD captures training transitions, such as landscape simplification, that conventional metrics miss. We also illustrate Landscaper's performance in challenging chemical property prediction tasks, where SMAD can serve as a metric for out-of-distribution generalization, offering valuable insights for model diagnostics and architecture design in data-scarce scientific machine learning scenarios.
Abstract:Diffusion Large Language Models (dLLMs) have emerged as a promising alternative to purely autoregressive language models because they can decode multiple tokens in parallel. However, state-of-the-art block-wise dLLMs rely on a "remasking" mechanism that decodes only the most confident tokens and discards the rest, effectively wasting computation. We demonstrate that recycling computation from the discarded tokens is beneficial, as these tokens retain contextual information useful for subsequent decoding iterations. In light of this, we propose Residual Context Diffusion (RCD), a module that converts these discarded token representations into contextual residuals and injects them back for the next denoising step. RCD uses a decoupled two-stage training pipeline to bypass the memory bottlenecks associated with backpropagation. We validate our method on both long CoT reasoning (SDAR) and short CoT instruction following (LLaDA) models. We demonstrate that a standard dLLM can be efficiently converted to the RCD paradigm with merely ~1 billion tokens. RCD consistently improves frontier dLLMs by 5-10 points in accuracy with minimal extra computation overhead across a wide range of benchmarks. Notably, on the most challenging AIME tasks, RCD nearly doubles baseline accuracy and attains up to 4-5x fewer denoising steps at equivalent accuracy levels.
Abstract:Matrix functions such as square root, inverse roots, and orthogonalization play a central role in preconditioned gradient methods for neural network training. This has motivated the development of iterative algorithms that avoid explicit eigendecompositions and rely primarily on matrix multiplications, making them well suited for modern GPU accelerators. We present PRISM (Polynomial-fitting and Randomized Iterative Sketching for Matrix functions computation), a general framework for accelerating iterative algorithms for computing matrix functions. PRISM combines adaptive polynomial approximation with randomized sketching: at each iteration, it fits a polynomial surrogate to the current spectrum via a sketched least-squares problem, adapting to the instance at hand with minimal overhead. We apply PRISM to accelerate Newton-Schulz-like iterations for matrix square roots and orthogonalization, which are core primitives in machine learning. Unlike prior methods, PRISM requires no explicit spectral bounds or singular value estimates; and it adapts automatically to the evolving spectrum. Empirically, PRISM accelerates training when integrated into Shampoo and Muon optimizers.