CARE: A Molecular-Guided Foundation Model with Adaptive Region Modeling for Whole Slide Image Analysis

Foundation models have recently achieved impressive success in computational pathology, demonstrating strong generalization across diverse histopathology tasks. However, existing models overlook the heterogeneous and non-uniform organization of pathological regions of interest (ROIs) because they rely on natural image backbones not tailored for tissue morphology. Consequently, they often fail to capture the coherent tissue architecture beyond isolated patches, limiting interpretability and clinical relevance. To address these challenges, we present Cross-modal Adaptive Region Encoder (CARE), a foundation model for pathology that automatically partitions WSIs into several morphologically relevant regions. Specifically, CARE employs a two-stage pretraining strategy: (1) a self-supervised unimodal pretraining stage that learns morphological representations from 34,277 whole-slide images (WSIs) without segmentation annotations, and (2) a cross-modal alignment stage that leverages RNA and protein profiles to refine the construction and representation of adaptive regions. This molecular guidance enables CARE to identify biologically relevant patterns and generate irregular yet coherent tissue regions, selecting the most representative area as ROI. CARE supports a broad range of pathology-related tasks, using either the ROI feature or the slide-level feature obtained by aggregating adaptive regions. Based on only one-tenth of the pretraining data typically used by mainstream foundation models, CARE achieves superior average performance across 33 downstream benchmarks, including morphological classification, molecular prediction, and survival analysis, and outperforms other foundation model baselines overall.

SecCodeBench-V2 Technical Report

We introduce SecCodeBench-V2, a publicly released benchmark for evaluating Large Language Model (LLM) copilots' capabilities of generating secure code. SecCodeBench-V2 comprises 98 generation and fix scenarios derived from Alibaba Group's industrial productions, where the underlying security issues span 22 common CWE (Common Weakness Enumeration) categories across five programming languages: Java, C, Python, Go, and Node.js. SecCodeBench-V2 adopts a function-level task formulation: each scenario provides a complete project scaffold and requires the model to implement or patch a designated target function under fixed interfaces and dependencies. For each scenario, SecCodeBench-V2 provides executable proof-of-concept (PoC) test cases for both functional validation and security verification. All test cases are authored and double-reviewed by security experts, ensuring high fidelity, broad coverage, and reliable ground truth. Beyond the benchmark itself, we build a unified evaluation pipeline that assesses models primarily via dynamic execution. For most scenarios, we compile and run model-generated artifacts in isolated environments and execute PoC test cases to validate both functional correctness and security properties. For scenarios where security issues cannot be adjudicated with deterministic test cases, we additionally employ an LLM-as-a-judge oracle. To summarize performance across heterogeneous scenarios and difficulty levels, we design a Pass@K-based scoring protocol with principled aggregation over scenarios and severity, enabling holistic and comparable evaluation across models. Overall, SecCodeBench-V2 provides a rigorous and reproducible foundation for assessing the security posture of AI coding assistants, with results and artifacts released at https://alibaba.github.io/sec-code-bench. The benchmark is publicly available at https://github.com/alibaba/sec-code-bench.

A Systematic Review on Data-Driven Brain Deformation Modeling for Image-Guided Neurosurgery

Accurate compensation of brain deformation is a critical challenge for reliable image-guided neurosurgery, as surgical manipulation and tumor resection induce tissue motion that misaligns preoperative planning images with intraoperative anatomy and longitudinal studies. In this systematic review, we synthesize recent AI-driven approaches developed between January 2020 and April 2025 for modeling and correcting brain deformation. A comprehensive literature search was conducted in PubMed, IEEE Xplore, Scopus, and Web of Science, with predefined inclusion and exclusion criteria focused on computational methods applied to brain deformation compensation for neurosurgical imaging, resulting in 41 studies meeting these criteria. We provide a unified analysis of methodological strategies, including deep learning-based image registration, direct deformation field regression, synthesis-driven multimodal alignment, resection-aware architectures addressing missing correspondences, and hybrid models that integrate biomechanical priors. We also examine dataset utilization, reported evaluation metrics, validation protocols, and how uncertainty and generalization have been assessed across studies. While AI-based deformation models demonstrate promising performance and computational efficiency, current approaches exhibit limitations in out-of-distribution robustness, standardized benchmarking, interpretability, and readiness for clinical deployment. Our review highlights these gaps and outlines opportunities for future research aimed at achieving more robust, generalizable, and clinically translatable deformation compensation solutions for neurosurgical guidance. By organizing recent advances and critically evaluating evaluation practices, this work provides a comprehensive foundation for researchers and clinicians engaged in developing and applying AI-based brain deformation methods.

HAAF: Hierarchical Adaptation and Alignment of Foundation Models for Few-Shot Pathology Anomaly Detection

Precision pathology relies on detecting fine-grained morphological abnormalities within specific Regions of Interest (ROIs), as these local, texture-rich cues - rather than global slide contexts - drive expert diagnostic reasoning. While Vision-Language (V-L) models promise data efficiency by leveraging semantic priors, adapting them faces a critical Granularity Mismatch, where generic representations fail to resolve such subtle defects. Current adaptation methods often treat modalities as independent streams, failing to ground semantic prompts in ROI-specific visual contexts. To bridge this gap, we propose the Hierarchical Adaptation and Alignment Framework (HAAF). At its core is a novel Cross-Level Scaled Alignment (CLSA) mechanism that enforces a sequential calibration order: visual features first inject context into text prompts to generate content-adaptive descriptors, which then spatially guide the visual encoder to spotlight anomalies. Additionally, a dual-branch inference strategy integrates semantic scores with geometric prototypes to ensure stability in few-shot settings. Experiments on four benchmarks show HAAF significantly outperforms state-of-the-art methods and effectively scales with domain-specific backbones (e.g., CONCH) in low-resource scenarios.

Unleashing the True Potential of LLMs: A Feedback-Triggered Self-Correction with Long-Term Multipath Decoding

Large Language Models (LLMs) have achieved remarkable performance across diverse tasks, yet their susceptibility to generating incorrect content during inference remains a critical unsolved challenge. While self-correction methods offer potential solutions, their effectiveness is hindered by two inherent limitations: (1) the absence of reliable guidance signals for error localization, and (2) the restricted reasoning depth imposed by conventional next-token decoding paradigms. To address these issues, we propose Feedback-Triggered Regeneration (FTR), a novel framework that synergizes user feedback with enhanced decoding dynamics. Specifically, FTR activates response regeneration only upon receiving negative user feedback, thereby circumventing error propagation from faulty self-assessment while preserving originally correct outputs. Furthermore, we introduce Long-Term Multipath (LTM) decoding, which enables systematic exploration of multiple reasoning trajectories through delayed sequence evaluation, effectively overcoming the myopic decision-making characteristic of standard next-token prediction. Extensive experiments on mathematical reasoning and code generation benchmarks demonstrate that our framework achieves consistent and significant improvements over state-of-the-art prompt-based self-correction methods.

Integrating Pathology and CT Imaging for Personalized Recurrence Risk Prediction in Renal Cancer

Recurrence risk estimation in clear cell renal cell carcinoma (ccRCC) is essential for guiding postoperative surveillance and treatment. The Leibovich score remains widely used for stratifying distant recurrence risk but offers limited patient-level resolution and excludes imaging information. This study evaluates multimodal recurrence prediction by integrating preoperative computed tomography (CT) and postoperative histopathology whole-slide images (WSIs). A modular deep learning framework with pretrained encoders and Cox-based survival modeling was tested across unimodal, late fusion, and intermediate fusion setups. In a real-world ccRCC cohort, WSI-based models consistently outperformed CT-only models, underscoring the prognostic strength of pathology. Intermediate fusion further improved performance, with the best model (TITAN-CONCH with ResNet-18) approaching the adjusted Leibovich score. Random tie-breaking narrowed the gap between the clinical baseline and learned models, suggesting discretization may overstate individualized performance. Using simple embedding concatenation, radiology added value primarily through fusion. These findings demonstrate the feasibility of foundation model-based multimodal integration for personalized ccRCC risk prediction. Future work should explore more expressive fusion strategies, larger multimodal datasets, and general-purpose CT encoders to better match pathology modeling capacity.

11Plus-Bench: Demystifying Multimodal LLM Spatial Reasoning with Cognitive-Inspired Analysis

For human cognitive process, spatial reasoning and perception are closely entangled, yet the nature of this interplay remains underexplored in the evaluation of multimodal large language models (MLLMs). While recent MLLM advancements show impressive performance on reasoning, their capacity for human-like spatial cognition remains an open question. In this work, we introduce a systematic evaluation framework to assess the spatial reasoning abilities of state-of-the-art MLLMs relative to human performance. Central to our work is 11Plus-Bench, a high-quality benchmark derived from realistic standardized spatial aptitude tests. 11Plus-Bench also features fine-grained expert annotations of both perceptual complexity and reasoning process, enabling detailed instance-level analysis of model behavior. Through extensive experiments across 14 MLLMs and human evaluation, we find that current MLLMs exhibit early signs of spatial cognition. Despite a large performance gap compared to humans, MLLMs' cognitive profiles resemble those of humans in that cognitive effort correlates strongly with reasoning-related complexity. However, instance-level performance in MLLMs remains largely random, whereas human correctness is highly predictable and shaped by abstract pattern complexity. These findings highlight both emerging capabilities and limitations in current MLLMs' spatial reasoning capabilities and provide actionable insights for advancing model design.

4D Visual Pre-training for Robot Learning

General visual representations learned from web-scale datasets for robotics have achieved great success in recent years, enabling data-efficient robot learning on manipulation tasks; yet these pre-trained representations are mostly on 2D images, neglecting the inherent 3D nature of the world. However, due to the scarcity of large-scale 3D data, it is still hard to extract a universal 3D representation from web datasets. Instead, we are seeking a general visual pre-training framework that could improve all 3D representations as an alternative. Our framework, called FVP, is a novel 4D Visual Pre-training framework for real-world robot learning. FVP frames the visual pre-training objective as a next-point-cloud-prediction problem, models the prediction model as a diffusion model, and pre-trains the model on the larger public datasets directly. Across twelve real-world manipulation tasks, FVP boosts the average success rate of 3D Diffusion Policy (DP3) for these tasks by 28%. The FVP pre-trained DP3 achieves state-of-the-art performance across imitation learning methods. Moreover, the efficacy of FVP adapts across various point cloud encoders and datasets. Finally, we apply FVP to the RDT-1B, a larger Vision-Language-Action robotic model, enhancing its performance on various robot tasks. Our project page is available at: https://4d- visual-pretraining.github.io/.

Tady: A Neural Disassembler without Structural Constraint Violations

Disassembly is a crucial yet challenging step in binary analysis. While emerging neural disassemblers show promise for efficiency and accuracy, they frequently generate outputs violating fundamental structural constraints, which significantly compromise their practical usability. To address this critical problem, we regularize the disassembly solution space by formalizing and applying key structural constraints based on post-dominance relations. This approach systematically detects widespread errors in existing neural disassemblers' outputs. These errors often originate from models' limited context modeling and instruction-level decoding that neglect global structural integrity. We introduce Tady, a novel neural disassembler featuring an improved model architecture and a dedicated post-processing algorithm, specifically engineered to address these deficiencies. Comprehensive evaluations on diverse binaries demonstrate that Tady effectively eliminates structural constraint violations and functions with high efficiency, while maintaining instruction-level accuracy.

The Butterfly Effect in Pathology: Exploring Security in Pathology Foundation Models

With the widespread adoption of pathology foundation models in both research and clinical decision support systems, exploring their security has become a critical concern. However, despite their growing impact, the vulnerability of these models to adversarial attacks remains largely unexplored. In this work, we present the first systematic investigation into the security of pathology foundation models for whole slide image~(WSI) analysis against adversarial attacks. Specifically, we introduce the principle of \textit{local perturbation with global impact} and propose a label-free attack framework that operates without requiring access to downstream task labels. Under this attack framework, we revise four classical white-box attack methods and redefine the perturbation budget based on the characteristics of WSI. We conduct comprehensive experiments on three representative pathology foundation models across five datasets and six downstream tasks. Despite modifying only 0.1\% of patches per slide with imperceptible noise, our attack leads to downstream accuracy degradation that can reach up to 20\% in the worst cases. Furthermore, we analyze key factors that influence attack success, explore the relationship between patch-level vulnerability and semantic content, and conduct a preliminary investigation into potential defence strategies. These findings lay the groundwork for future research on the adversarial robustness and reliable deployment of pathology foundation models. Our code is publicly available at: https://github.com/Jiashuai-Liu-hmos/Attack-WSI-pathology-foundation-models.