Lightweight In-Context Tuning for Multimodal Unified Models

In-context learning (ICL) involves reasoning from given contextual examples. As more modalities comes, this procedure is becoming more challenging as the interleaved input modalities convolutes the understanding process. This is exemplified by the observation that multimodal models often struggle to effectively extrapolate from contextual examples to perform ICL. To address these challenges, we introduce MultiModal In-conteXt Tuning (M$^2$IXT), a lightweight module to enhance the ICL capabilities of multimodal unified models. The proposed M$^2$IXT module perceives an expandable context window to incorporate various labeled examples of multiple modalities (e.g., text, image, and coordinates). It can be prepended to various multimodal unified models (e.g., OFA, Unival, LLaVA) of different architectures and trained via a mixed-tasks strategy to enable rapid few-shot adaption on multiple tasks and datasets. When tuned on as little as 50K multimodal data, M$^2$IXT can boost the few-shot ICL performance significantly (e.g., 18\% relative increase for OFA), and obtained state-of-the-art results across an array of tasks including visual question answering, image captioning, visual grounding, and visual entailment, while being considerably small in terms of model parameters (e.g., $\sim$$20\times$ smaller than Flamingo or MMICL), highlighting the flexibility and effectiveness of M$^2$IXT as a multimodal in-context learner.

One for All: Towards Training One Graph Model for All Classification Tasks

Designing a single model that addresses multiple tasks has been a long-standing objective in artificial intelligence. Recently, large language models have demonstrated exceptional capability in integrating and solving different tasks within the language domain. However, a unified model for various tasks on graphs remains underexplored, primarily due to the challenges unique to the graph learning domain. First, graph data from different areas carry distinct attributes and follow different distributions. Such discrepancy makes it hard to represent graphs in a single representation space. Second, tasks on graphs diversify into node, link, and graph tasks, requiring distinct embedding strategies. Finally, an appropriate graph prompting paradigm for in-context learning is unclear. Striving to handle all the aforementioned challenges, we propose One for All (OFA), the first general framework that can use a single graph model to address the above challenges. Specifically, OFA proposes text-attributed graphs to unify different graph data by describing nodes and edges with natural language and uses language models to encode the diverse and possibly cross-domain text attributes to feature vectors in the same embedding space. Furthermore, OFA introduces the concept of nodes-of-interest to standardize different tasks with a single task representation. For in-context learning on graphs, OFA introduces a novel graph prompting paradigm that appends prompting substructures to the input graph, which enables it to address varied tasks without fine-tuning. We train the OFA model using graph data from multiple domains (including citation networks, molecular graphs, knowledge graphs, etc.) simultaneously and evaluate its ability in supervised, few-shot, and zero-shot learning scenarios. OFA performs well across different tasks, making it the first general-purpose graph classification model across domains.

GNNHLS: Evaluating Graph Neural Network Inference via High-Level Synthesis

With the ever-growing popularity of Graph Neural Networks (GNNs), efficient GNN inference is gaining tremendous attention. Field-Programming Gate Arrays (FPGAs) are a promising execution platform due to their fine-grained parallelism, low-power consumption, reconfigurability, and concurrent execution. Even better, High-Level Synthesis (HLS) tools bridge the gap between the non-trivial FPGA development efforts and rapid emergence of new GNN models. In this paper, we propose GNNHLS, an open-source framework to comprehensively evaluate GNN inference acceleration on FPGAs via HLS, containing a software stack for data generation and baseline deployment, and FPGA implementations of 6 well-tuned GNN HLS kernels. We evaluate GNNHLS on 4 graph datasets with distinct topologies and scales. The results show that GNNHLS achieves up to 50.8x speedup and 423x energy reduction relative to the CPU baselines. Compared with the GPU baselines, GNNHLS achieves up to 5.16x speedup and 74.5x energy reduction.

FP-PET: Large Model, Multiple Loss And Focused Practice

This study presents FP-PET, a comprehensive approach to medical image segmentation with a focus on CT and PET images. Utilizing a dataset from the AutoPet2023 Challenge, the research employs a variety of machine learning models, including STUNet-large, SwinUNETR, and VNet, to achieve state-of-the-art segmentation performance. The paper introduces an aggregated score that combines multiple evaluation metrics such as Dice score, false positive volume (FPV), and false negative volume (FNV) to provide a holistic measure of model effectiveness. The study also discusses the computational challenges and solutions related to model training, which was conducted on high-performance GPUs. Preprocessing and postprocessing techniques, including gaussian weighting schemes and morphological operations, are explored to further refine the segmentation output. The research offers valuable insights into the challenges and solutions for advanced medical image segmentation.

Graph Contrastive Learning Meets Graph Meta Learning: A Unified Method for Few-shot Node Tasks

Graph Neural Networks (GNNs) have become popular in Graph Representation Learning (GRL). One fundamental application is few-shot node classification. Most existing methods follow the meta learning paradigm, showing the ability of fast generalization to few-shot tasks. However, recent works indicate that graph contrastive learning combined with fine-tuning can significantly outperform meta learning methods. Despite the empirical success, there is limited understanding of the reasons behind it. In our study, we first identify two crucial advantages of contrastive learning compared to meta learning, including (1) the comprehensive utilization of graph nodes and (2) the power of graph augmentations. To integrate the strength of both contrastive learning and meta learning on the few-shot node classification tasks, we introduce a new paradigm: Contrastive Few-Shot Node Classification (COLA). Specifically, COLA employs graph augmentations to identify semantically similar nodes, which enables the construction of meta-tasks without the need for label information. Therefore, COLA can utilize all nodes to construct meta-tasks, further reducing the risk of overfitting. Through extensive experiments, we validate the essentiality of each component in our design and demonstrate that COLA achieves new state-of-the-art on all tasks.

Universal Normalization Enhanced Graph Representation Learning for Gene Network Prediction

Effective gene network representation learning is of great importance in bioinformatics to predict/understand the relation of gene profiles and disease phenotypes. Though graph neural networks (GNNs) have been the dominant architecture for analyzing various graph-structured data like social networks, their predicting on gene networks often exhibits subpar performance. In this paper, we formally investigate the gene network representation learning problem and characterize a notion of \textit{universal graph normalization}, where graph normalization can be applied in an universal manner to maximize the expressive power of GNNs while maintaining the stability. We propose a novel UNGNN (Universal Normalized GNN) framework, which leverages universal graph normalization in both the message passing phase and readout layer to enhance the performance of a base GNN. UNGNN has a plug-and-play property and can be combined with any GNN backbone in practice. A comprehensive set of experiments on gene-network-based bioinformatical tasks demonstrates that our UNGNN model significantly outperforms popular GNN benchmarks and provides an overall performance improvement of 16 $\%$ on average compared to previous state-of-the-art (SOTA) baselines. Furthermore, we also evaluate our theoretical findings on other graph datasets where the universal graph normalization is solvable, and we observe that UNGNN consistently achieves the superior performance.

CktGNN: Circuit Graph Neural Network for Electronic Design Automation

The electronic design automation of analog circuits has been a longstanding challenge in the integrated circuit field due to the huge design space and complex design trade-offs among circuit specifications. In the past decades, intensive research efforts have mostly been paid to automate the transistor sizing with a given circuit topology. By recognizing the graph nature of circuits, this paper presents a Circuit Graph Neural Network (CktGNN) that simultaneously automates the circuit topology generation and device sizing based on the encoder-dependent optimization subroutines. Particularly, CktGNN encodes circuit graphs using a two-level GNN framework (of nested GNN) where circuits are represented as combinations of subgraphs in a known subgraph basis. In this way, it significantly improves design efficiency by reducing the number of subgraphs to perform message passing. Nonetheless, another critical roadblock to advancing learning-assisted circuit design automation is a lack of public benchmarks to perform canonical assessment and reproducible research. To tackle the challenge, we introduce Open Circuit Benchmark (OCB), an open-sourced dataset that contains $10$K distinct operational amplifiers with carefully-extracted circuit specifications. OCB is also equipped with communicative circuit generation and evaluation capabilities such that it can help to generalize CktGNN to design various analog circuits by producing corresponding datasets. Experiments on OCB show the extraordinary advantages of CktGNN through representation-based optimization frameworks over other recent powerful GNN baselines and human experts' manual designs. Our work paves the way toward a learning-based open-sourced design automation for analog circuits. Our source code is available at \url{https://github.com/zehao-dong/CktGNN}.

3D-VisTA: Pre-trained Transformer for 3D Vision and Text Alignment

3D vision-language grounding (3D-VL) is an emerging field that aims to connect the 3D physical world with natural language, which is crucial for achieving embodied intelligence. Current 3D-VL models rely heavily on sophisticated modules, auxiliary losses, and optimization tricks, which calls for a simple and unified model. In this paper, we propose 3D-VisTA, a pre-trained Transformer for 3D Vision and Text Alignment that can be easily adapted to various downstream tasks. 3D-VisTA simply utilizes self-attention layers for both single-modal modeling and multi-modal fusion without any sophisticated task-specific design. To further enhance its performance on 3D-VL tasks, we construct ScanScribe, the first large-scale 3D scene-text pairs dataset for 3D-VL pre-training. ScanScribe contains 2,995 RGB-D scans for 1,185 unique indoor scenes originating from ScanNet and 3R-Scan datasets, along with paired 278K scene descriptions generated from existing 3D-VL tasks, templates, and GPT-3. 3D-VisTA is pre-trained on ScanScribe via masked language/object modeling and scene-text matching. It achieves state-of-the-art results on various 3D-VL tasks, ranging from visual grounding and dense captioning to question answering and situated reasoning. Moreover, 3D-VisTA demonstrates superior data efficiency, obtaining strong performance even with limited annotations during downstream task fine-tuning.

PNT-Edge: Towards Robust Edge Detection with Noisy Labels by Learning Pixel-level Noise Transitions

Relying on large-scale training data with pixel-level labels, previous edge detection methods have achieved high performance. However, it is hard to manually label edges accurately, especially for large datasets, and thus the datasets inevitably contain noisy labels. This label-noise issue has been studied extensively for classification, while still remaining under-explored for edge detection. To address the label-noise issue for edge detection, this paper proposes to learn Pixel-level NoiseTransitions to model the label-corruption process. To achieve it, we develop a novel Pixel-wise Shift Learning (PSL) module to estimate the transition from clean to noisy labels as a displacement field. Exploiting the estimated noise transitions, our model, named PNT-Edge, is able to fit the prediction to clean labels. In addition, a local edge density regularization term is devised to exploit local structure information for better transition learning. This term encourages learning large shifts for the edges with complex local structures. Experiments on SBD and Cityscapes demonstrate the effectiveness of our method in relieving the impact of label noise. Codes will be available at github.

SL: Stable Learning in Source-Free Domain Adaption for Medical Image Segmentation

Deep learning techniques for medical image analysis usually suffer from the domain shift between source and target data. Most existing works focus on unsupervised domain adaptation (UDA). However, in practical applications, privacy issues are much more severe. For example, the data of different hospitals have domain shifts due to equipment problems, and data of the two domains cannot be available simultaneously because of privacy. In this challenge defined as Source-Free UDA, the previous UDA medical methods are limited. Although a variety of medical source-free unsupervised domain adaption (MSFUDA) methods have been proposed, we found they fall into an over-fitting dilemma called "longer training, worse performance." Therefore, we propose the Stable Learning (SL) strategy to address the dilemma. SL is a scalable method and can be integrated with other research, which consists of Weight Consolidation and Entropy Increase. First, we apply Weight Consolidation to retain domain-invariant knowledge and then we design Entropy Increase to avoid over-learning. Comparative experiments prove the effectiveness of SL. We also have done extensive ablation experiments. Besides, We will release codes including a variety of MSFUDA methods.