Abstract:Despite continuous advancements in cancer treatment, brain metastatic disease remains a significant complication of primary cancer and is associated with an unfavorable prognosis. One approach for improving diagnosis, management, and outcomes is to implement algorithms based on artificial intelligence for the automated segmentation of both pre- and post-treatment MRI brain images. Such algorithms rely on volumetric criteria for lesion identification and treatment response assessment, which are still not available in clinical practice. Therefore, it is critical to establish tools for rapid volumetric segmentations methods that can be translated to clinical practice and that are trained on high quality annotated data. The BraTS-METS 2025 Lighthouse Challenge aims to address this critical need by establishing inter-rater and intra-rater variability in dataset annotation by generating high quality annotated datasets from four individual instances of segmentation by neuroradiologists while being recorded on video (two instances doing "from scratch" and two instances after AI pre-segmentation). This high-quality annotated dataset will be used for testing phase in 2025 Lighthouse challenge and will be publicly released at the completion of the challenge. The 2025 Lighthouse challenge will also release the 2023 and 2024 segmented datasets that were annotated using an established pipeline of pre-segmentation, student annotation, two neuroradiologists checking, and one neuroradiologist finalizing the process. It builds upon its previous edition by including post-treatment cases in the dataset. Using these high-quality annotated datasets, the 2025 Lighthouse challenge plans to test benchmark algorithms for automated segmentation of pre-and post-treatment brain metastases (BM), trained on diverse and multi-institutional datasets of MRI images obtained from patients with brain metastases.
Abstract:Geocoding systems are widely used in both scientific research for spatial analysis and everyday life through location-based services. The quality of geocoded data significantly impacts subsequent processes and applications, underscoring the need for next-generation systems. In response to this demand, this review first examines the evolving requirements for geocoding inputs and outputs across various scenarios these systems must address. It then provides a detailed analysis of how to construct such systems by breaking them down into key functional components and reviewing a broad spectrum of existing approaches, from traditional rule-based methods to advanced techniques in information retrieval, natural language processing, and large language models. Finally, we identify opportunities to improve next-generation geocoding systems in light of recent technological advances.
Abstract:The advent of 3D Gaussian Splatting (3DGS) has advanced 3D scene reconstruction and novel view synthesis. With the growing interest of interactive applications that need immediate feedback, online 3DGS reconstruction in real-time is in high demand. However, none of existing methods yet meet the demand due to three main challenges: the absence of predetermined camera parameters, the need for generalizable 3DGS optimization, and the necessity of reducing redundancy. We propose StreamGS, an online generalizable 3DGS reconstruction method for unposed image streams, which progressively transform image streams to 3D Gaussian streams by predicting and aggregating per-frame Gaussians. Our method overcomes the limitation of the initial point reconstruction \cite{dust3r} in tackling out-of-domain (OOD) issues by introducing a content adaptive refinement. The refinement enhances cross-frame consistency by establishing reliable pixel correspondences between adjacent frames. Such correspondences further aid in merging redundant Gaussians through cross-frame feature aggregation. The density of Gaussians is thereby reduced, empowering online reconstruction by significantly lowering computational and memory costs. Extensive experiments on diverse datasets have demonstrated that StreamGS achieves quality on par with optimization-based approaches but does so 150 times faster, and exhibits superior generalizability in handling OOD scenes.
Abstract:The rapid advancements in computing dramatically increase the scale and cost of training Large Language Models (LLMs). Accurately predicting downstream task performance prior to model training is crucial for efficient resource allocation, yet remains challenging due to two primary constraints: (1) the "emergence phenomenon", wherein downstream performance metrics become meaningful only after extensive training, which limits the ability to use smaller models for prediction; (2) Uneven task difficulty distributions and the absence of consistent scaling laws, resulting in substantial metric variability. Existing performance prediction methods suffer from limited accuracy and reliability, thereby impeding the assessment of potential LLM capabilities. To address these challenges, we propose a Clustering-On-Difficulty (COD) downstream performance prediction framework. COD first constructs a predictable support subset by clustering tasks based on difficulty features, strategically excluding non-emergent and non-scalable clusters. The scores on the selected subset serve as effective intermediate predictors of downstream performance on the full evaluation set. With theoretical support, we derive a mapping function that transforms performance metrics from the predictable subset to the full evaluation set, thereby ensuring accurate extrapolation of LLM downstream performance. The proposed method has been applied to predict performance scaling for a 70B LLM, providing actionable insights for training resource allocation and assisting in monitoring the training process. Notably, COD achieves remarkable predictive accuracy on the 70B LLM by leveraging an ensemble of small models, demonstrating an absolute mean deviation of 1.36% across eight important LLM evaluation benchmarks.
Abstract:This paper proposes a new compression paradigm -- Guaranteed Conditional Diffusion with Tensor Correction (GCDTC) -- for lossy scientific data compression. The framework is based on recent conditional diffusion (CD) generative models, and it consists of a conditional diffusion model, tensor correction, and error guarantee. Our diffusion model is a mixture of 3D conditioning and 2D denoising U-Net. The approach leverages a 3D block-based compressing module to address spatiotemporal correlations in structured scientific data. Then, the reverse diffusion process for 2D spatial data is conditioned on the ``slices'' of content latent variables produced by the compressing module. After training, the denoising decoder reconstructs the data with zero noise and content latent variables, and thus it is entirely deterministic. The reconstructed outputs of the CD model are further post-processed by our tensor correction and error guarantee steps to control and ensure a maximum error distortion, which is an inevitable requirement in lossy scientific data compression. Our experiments involving two datasets generated by climate and chemical combustion simulations show that our framework outperforms standard convolutional autoencoders and yields competitive compression quality with an existing scientific data compression algorithm.
Abstract:Direct Preference Optimization (DPO) and its variants have become increasingly popular for aligning language models with human preferences. These methods aim to teach models to better distinguish between chosen (or preferred) and rejected (or dispreferred) responses. However, prior research has identified that the probability of chosen responses often decreases during training, and this phenomenon is known as likelihood displacement. To tackle this challenge, in this work we introduce \method to controllably shift the distribution of the chosen probability. Then, we show that \method exhibits a fundamental trade-off between improving the chosen probability and sacrificing the reward margin, as supported by both theoretical analysis and experimental validation. Furthermore, we demonstrate the superiority of \method over DPO on downstream tasks such as MT-Bench and a designed win rate experiment. We believe this study shows that the likelihood displacement issue of DPO can be effectively mitigated with a simple, theoretically grounded solution. Our code is available at https://github.com/Meaquadddd/DPO-Shift.
Abstract:Autofocus is necessary for high-throughput and real-time scanning in microscopic imaging. Traditional methods rely on complex hardware or iterative hill-climbing algorithms. Recent learning-based approaches have demonstrated remarkable efficacy in a one-shot setting, avoiding hardware modifications or iterative mechanical lens adjustments. However, in this paper, we highlight a significant challenge that the richness of image content can significantly affect autofocus performance. When the image content is sparse, previous autofocus methods, whether traditional climbing-hill or learning-based, tend to fail. To tackle this, we propose a content-importance-based solution, named SparseFocus, featuring a novel two-stage pipeline. The first stage measures the importance of regions within the image, while the second stage calculates the defocus distance from selected important regions. To validate our approach and benefit the research community, we collect a large-scale dataset comprising millions of labelled defocused images, encompassing both dense, sparse and extremely sparse scenarios. Experimental results show that SparseFocus surpasses existing methods, effectively handling all levels of content sparsity. Moreover, we integrate SparseFocus into our Whole Slide Imaging (WSI) system that performs well in real-world applications. The code and dataset will be made available upon the publication of this paper.
Abstract:This work addresses the critical question of why and when diffusion models, despite being designed for generative tasks, can excel at learning high-quality representations in a self-supervised manner. To address this, we develop a mathematical framework based on a low-dimensional data model and posterior estimation, revealing a fundamental trade-off between generation and representation quality near the final stage of image generation. Our analysis explains the unimodal representation dynamics across noise scales, mainly driven by the interplay between data denoising and class specification. Building on these insights, we propose an ensemble method that aggregates features across noise levels, significantly improving both clean performance and robustness under label noise. Extensive experiments on both synthetic and real-world datasets validate our findings.
Abstract:Large Reconstruction Models (LRMs) have recently become a popular method for creating 3D foundational models. Training 3D reconstruction models with 2D visual data traditionally requires prior knowledge of camera poses for the training samples, a process that is both time-consuming and prone to errors. Consequently, 3D reconstruction training has been confined to either synthetic 3D datasets or small-scale datasets with annotated poses. In this study, we investigate the feasibility of 3D reconstruction using unposed video data of various objects. We introduce UVRM, a novel 3D reconstruction model capable of being trained and evaluated on monocular videos without requiring any information about the pose. UVRM uses a transformer network to implicitly aggregate video frames into a pose-invariant latent feature space, which is then decoded into a tri-plane 3D representation. To obviate the need for ground-truth pose annotations during training, UVRM employs a combination of the score distillation sampling (SDS) method and an analysis-by-synthesis approach, progressively synthesizing pseudo novel-views using a pre-trained diffusion model. We qualitatively and quantitatively evaluate UVRM's performance on the G-Objaverse and CO3D datasets without relying on pose information. Extensive experiments show that UVRM is capable of effectively and efficiently reconstructing a wide range of 3D objects from unposed videos.
Abstract:We present a foundation model (FM) for lossy scientific data compression, combining a variational autoencoder (VAE) with a hyper-prior structure and a super-resolution (SR) module. The VAE framework uses hyper-priors to model latent space dependencies, enhancing compression efficiency. The SR module refines low-resolution representations into high-resolution outputs, improving reconstruction quality. By alternating between 2D and 3D convolutions, the model efficiently captures spatiotemporal correlations in scientific data while maintaining low computational cost. Experimental results demonstrate that the FM generalizes well to unseen domains and varying data shapes, achieving up to 4 times higher compression ratios than state-of-the-art methods after domain-specific fine-tuning. The SR module improves compression ratio by 30 percent compared to simple upsampling techniques. This approach significantly reduces storage and transmission costs for large-scale scientific simulations while preserving data integrity and fidelity.