PET2Rep: Towards Vision-Language Model-Drived Automated Radiology Report Generation for Positron Emission Tomography

Positron emission tomography (PET) is a cornerstone of modern oncologic and neurologic imaging, distinguished by its unique ability to illuminate dynamic metabolic processes that transcend the anatomical focus of traditional imaging technologies. Radiology reports are essential for clinical decision making, yet their manual creation is labor-intensive and time-consuming. Recent advancements of vision-language models (VLMs) have shown strong potential in medical applications, presenting a promising avenue for automating report generation. However, existing applications of VLMs in the medical domain have predominantly focused on structural imaging modalities, while the unique characteristics of molecular PET imaging have largely been overlooked. To bridge the gap, we introduce PET2Rep, a large-scale comprehensive benchmark for evaluation of general and medical VLMs for radiology report generation for PET images. PET2Rep stands out as the first dedicated dataset for PET report generation with metabolic information, uniquely capturing whole-body image-report pairs that cover dozens of organs to fill the critical gap in existing benchmarks and mirror real-world clinical comprehensiveness. In addition to widely recognized natural language generation metrics, we introduce a series of clinical efficiency metrics to evaluate the quality of radiotracer uptake pattern description in key organs in generated reports. We conduct a head-to-head comparison of 30 cutting-edge general-purpose and medical-specialized VLMs. The results show that the current state-of-the-art VLMs perform poorly on PET report generation task, falling considerably short of fulfilling practical needs. Moreover, we identify several key insufficiency that need to be addressed to advance the development in medical applications.

METEOR: Multi-Encoder Collaborative Token Pruning for Efficient Vision Language Models

Vision encoders serve as the cornerstone of multimodal understanding. Single-encoder architectures like CLIP exhibit inherent constraints in generalizing across diverse multimodal tasks, while recent multi-encoder fusion methods introduce prohibitive computational overhead to achieve superior performance using complementary visual representations from multiple vision encoders. To address this, we propose a progressive pruning framework, namely Multi-Encoder collaboraTivE tOken pRuning (METEOR), that eliminates redundant visual tokens across the encoding, fusion, and decoding stages for multi-encoder MLLMs. For multi-vision encoding, we discard redundant tokens within each encoder via a rank guided collaborative token assignment strategy. Subsequently, for multi-vision fusion, we combine the visual features from different encoders while reducing cross-encoder redundancy with cooperative pruning. Finally, we propose an adaptive token pruning method in the LLM decoding stage to further discard irrelevant tokens based on the text prompts with dynamically adjusting pruning ratios for specific task demands. To our best knowledge, this is the first successful attempt that achieves an efficient multi-encoder based vision language model with multi-stage pruning strategies. Extensive experiments on 11 benchmarks demonstrate the effectiveness of our proposed approach. Compared with EAGLE, a typical multi-encoder MLLMs, METEOR reduces 76% visual tokens with only 0.3% performance drop in average. The code is available at https://github.com/YuchenLiu98/METEOR.

Optimizing Model Splitting and Device Task Assignment for Deceptive Signal Assisted Private Multi-hop Split Learning

In this paper, deceptive signal-assisted private split learning is investigated. In our model, several edge devices jointly perform collaborative training, and some eavesdroppers aim to collect the model and data information from devices. To prevent the eavesdroppers from collecting model and data information, a subset of devices can transmit deceptive signals. Therefore, it is necessary to determine the subset of devices used for deceptive signal transmission, the subset of model training devices, and the models assigned to each model training device. This problem is formulated as an optimization problem whose goal is to minimize the information leaked to eavesdroppers while meeting the model training energy consumption and delay constraints. To solve this problem, we propose a soft actor-critic deep reinforcement learning framework with intrinsic curiosity module and cross-attention (ICM-CA) that enables a centralized agent to determine the model training devices, the deceptive signal transmission devices, the transmit power, and sub-models assigned to each model training device without knowing the position and monitoring probability of eavesdroppers. The proposed method uses an ICM module to encourage the server to explore novel actions and states and a CA module to determine the importance of each historical state-action pair thus improving training efficiency. Simulation results demonstrate that the proposed method improves the convergence rate by up to 3x and reduces the information leaked to eavesdroppers by up to 13% compared to the traditional SAC algorithm.

Physics-informed Neural Motion Planning via Domain Decomposition in Large Environments

Physics-informed Neural Motion Planners (PiNMPs) provide a data-efficient framework for solving the Eikonal Partial Differential Equation (PDE) and representing the cost-to-go function for motion planning. However, their scalability remains limited by spectral bias and the complex loss landscape of PDE-driven training. Domain decomposition mitigates these issues by dividing the environment into smaller subdomains, but existing methods enforce continuity only at individual spatial points. While effective for function approximation, these methods fail to capture the spatial connectivity required for motion planning, where the cost-to-go function depends on both the start and goal coordinates rather than a single query point. We propose Finite Basis Neural Time Fields (FB-NTFields), a novel neural field representation for scalable cost-to-go estimation. Instead of enforcing continuity in output space, FB-NTFields construct a latent space representation, computing the cost-to-go as a distance between the latent embeddings of start and goal coordinates. This enables global spatial coherence while integrating domain decomposition, ensuring efficient large-scale motion planning. We validate FB-NTFields in complex synthetic and real-world scenarios, demonstrating substantial improvements over existing PiNMPs. Finally, we deploy our method on a Unitree B1 quadruped robot, successfully navigating indoor environments. The supplementary videos can be found at https://youtu.be/OpRuCbLNOwM.

InverTune: Removing Backdoors from Multimodal Contrastive Learning Models via Trigger Inversion and Activation Tuning

Multimodal contrastive learning models like CLIP have demonstrated remarkable vision-language alignment capabilities, yet their vulnerability to backdoor attacks poses critical security risks. Attackers can implant latent triggers that persist through downstream tasks, enabling malicious control of model behavior upon trigger presentation. Despite great success in recent defense mechanisms, they remain impractical due to strong assumptions about attacker knowledge or excessive clean data requirements. In this paper, we introduce InverTune, the first backdoor defense framework for multimodal models under minimal attacker assumptions, requiring neither prior knowledge of attack targets nor access to the poisoned dataset. Unlike existing defense methods that rely on the same dataset used in the poisoning stage, InverTune effectively identifies and removes backdoor artifacts through three key components, achieving robust protection against backdoor attacks. Specifically, InverTune first exposes attack signatures through adversarial simulation, probabilistically identifying the target label by analyzing model response patterns. Building on this, we develop a gradient inversion technique to reconstruct latent triggers through activation pattern analysis. Finally, a clustering-guided fine-tuning strategy is employed to erase the backdoor function with only a small amount of arbitrary clean data, while preserving the original model capabilities. Experimental results show that InverTune reduces the average attack success rate (ASR) by 97.87% against the state-of-the-art (SOTA) attacks while limiting clean accuracy (CA) degradation to just 3.07%. This work establishes a new paradigm for securing multimodal systems, advancing security in foundation model deployment without compromising performance.

Beyond path selection: Better LLMs for Scientific Information Extraction with MimicSFT and Relevance and Rule-induced(R$^2$)GRPO

Previous study suggest that powerful Large Language Models (LLMs) trained with Reinforcement Learning with Verifiable Rewards (RLVR) only refines reasoning path without improving the reasoning capacity in math tasks while supervised-finetuning(SFT) with distillation can. We study this from the view of Scientific information extraction (SciIE) where LLMs and reasoning LLMs underperforms small Bert-based models. SciIE require both the reasoning and memorization. We argue that both SFT and RLVR can refine the reasoning path and improve reasoning capacity in a simple way based on SciIE. We propose two-stage training with 1. MimicSFT, using structured reasoning templates without needing high-quality chain-of-thought data, 2. R$^2$GRPO with relevance and rule-induced rewards. Experiments on scientific IE benchmarks show that both methods can improve the reasoning capacity. R$^2$GRPO with mimicSFT surpasses baseline LLMs and specialized supervised models in relation extraction. Our code is available at https://github.com/ranlislz/R2GRPO.

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data

The advent of single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) offers an innovative perspective for deciphering regulatory mechanisms by assembling a vast repository of single-cell chromatin accessibility data. While foundation models have achieved significant success in single-cell transcriptomics, there is currently no foundation model for scATAC-seq that supports zero-shot high-quality cell identification and comprehensive multi-omics analysis simultaneously. Key challenges lie in the high dimensionality and sparsity of scATAC-seq data, as well as the lack of a standardized schema for representing open chromatin regions (OCRs). Here, we present \textbf{ChromFound}, a foundation model tailored for scATAC-seq. ChromFound utilizes a hybrid architecture and genome-aware tokenization to effectively capture genome-wide long contexts and regulatory signals from dynamic chromatin landscapes. Pretrained on 1.97 million cells from 30 tissues and 6 disease conditions, ChromFound demonstrates broad applicability across 6 diverse tasks. Notably, it achieves robust zero-shot performance in generating universal cell representations and exhibits excellent transferability in cell type annotation and cross-omics prediction. By uncovering enhancer-gene links undetected by existing computational methods, ChromFound offers a promising framework for understanding disease risk variants in the noncoding genome.

Rethinking Repetition Problems of LLMs in Code Generation

With the advent of neural language models, the performance of code generation has been significantly boosted. However, the problem of repetitions during the generation process continues to linger. Previous work has primarily focused on content repetition, which is merely a fraction of the broader repetition problem in code generation. A more prevalent and challenging problem is structural repetition. In structural repetition, the repeated code appears in various patterns but possesses a fixed structure, which can be inherently reflected in grammar. In this paper, we formally define structural repetition and propose an efficient decoding approach called RPG, which stands for Repetition Penalization based on Grammar, to alleviate the repetition problems in code generation for LLMs. Specifically, RPG first leverages grammar rules to identify repetition problems during code generation, and then strategically decays the likelihood of critical tokens that contribute to repetitions, thereby mitigating them in code generation. To facilitate this study, we construct a new dataset CodeRepetEval to comprehensively evaluate approaches for mitigating the repetition problems in code generation. Extensive experimental results demonstrate that RPG substantially outperforms the best-performing baselines on CodeRepetEval dataset as well as HumanEval and MBPP benchmarks, effectively reducing repetitions and enhancing the quality of generated code.

Collection: Datasets from AFAR Challenge

This paper presents a comprehensive real-world and Digital Twin (DT) dataset collected as part of the Find A Rover (AFAR) Challenge, organized by the NSF Aerial Experimentation and Research Platform for Advanced Wireless (AERPAW) testbed and hosted at the Lake Wheeler Field in Raleigh, North Carolina. The AFAR Challenge was a competition involving five finalist university teams, focused on promoting innovation in UAV-assisted radio frequency (RF) source localization. Participating teams were tasked with designing UAV flight trajectories and localization algorithms to detect the position of a hidden unmanned ground vehicle (UGV), also referred to as a rover, emitting wireless probe signals generated by GNU Radio. The competition was structured to evaluate solutions in a DT environment first, followed by deployment and testing in AERPAW's outdoor wireless testbed. For each team, the UGV was placed at three different positions, resulting in a total of 30 datasets, 15 collected in a DT simulation environment and 15 in a physical outdoor testbed. Each dataset contains time-synchronized measurements of received signal strength (RSS), received signal quality (RSQ), GPS coordinates, UAV velocity, and UAV orientation (roll, pitch, and yaw). Data is organized into structured folders by team, environment (DT and real-world), and UGV location. The dataset supports research in UAV-assisted RF source localization, air-to-ground (A2G) wireless propagation modeling, trajectory optimization, signal prediction, autonomous navigation, and DT validation. With approximately 300k time-synchronized samples collected from real-world experiments, the dataset provides a substantial foundation for training and evaluating deep learning (DL) models. Overall, the AFAR dataset serves as a valuable resource for advancing robust, real-world solutions in UAV-enabled wireless communications and sensing systems.

X-Fusion: Introducing New Modality to Frozen Large Language Models

We propose X-Fusion, a framework that extends pretrained Large Language Models (LLMs) for multimodal tasks while preserving their language capabilities. X-Fusion employs a dual-tower design with modality-specific weights, keeping the LLM's parameters frozen while integrating vision-specific information for both understanding and generation. Our experiments demonstrate that X-Fusion consistently outperforms alternative architectures on both image-to-text and text-to-image tasks. We find that incorporating understanding-focused data improves generation quality, reducing image data noise enhances overall performance, and feature alignment accelerates convergence for smaller models but has minimal impact on larger ones. Our findings provide valuable insights into building efficient unified multimodal models.