DATR: Diffusion-based 3D Apple Tree Reconstruction Framework with Sparse-View

Digital twin applications offered transformative potential by enabling real-time monitoring and robotic simulation through accurate virtual replicas of physical assets. The key to these systems is 3D reconstruction with high geometrical fidelity. However, existing methods struggled under field conditions, especially with sparse and occluded views. This study developed a two-stage framework (DATR) for the reconstruction of apple trees from sparse views. The first stage leverages onboard sensors and foundation models to semi-automatically generate tree masks from complex field images. Tree masks are used to filter out background information in multi-modal data for the single-image-to-3D reconstruction at the second stage. This stage consists of a diffusion model and a large reconstruction model for respective multi view and implicit neural field generation. The training of the diffusion model and LRM was achieved by using realistic synthetic apple trees generated by a Real2Sim data generator. The framework was evaluated on both field and synthetic datasets. The field dataset includes six apple trees with field-measured ground truth, while the synthetic dataset featured structurally diverse trees. Evaluation results showed that our DATR framework outperformed existing 3D reconstruction methods across both datasets and achieved domain-trait estimation comparable to industrial-grade stationary laser scanners while improving the throughput by $\sim$360 times, demonstrating strong potential for scalable agricultural digital twin systems.

Aleks: AI powered Multi Agent System for Autonomous Scientific Discovery via Data-Driven Approaches in Plant Science

Modern plant science increasingly relies on large, heterogeneous datasets, but challenges in experimental design, data preprocessing, and reproducibility hinder research throughput. Here we introduce Aleks, an AI-powered multi-agent system that integrates domain knowledge, data analysis, and machine learning within a structured framework to autonomously conduct data-driven scientific discovery. Once provided with a research question and dataset, Aleks iteratively formulated problems, explored alternative modeling strategies, and refined solutions across multiple cycles without human intervention. In a case study on grapevine red blotch disease, Aleks progressively identified biologically meaningful features and converged on interpretable models with robust performance. Ablation studies underscored the importance of domain knowledge and memory for coherent outcomes. This exploratory work highlights the promise of agentic AI as an autonomous collaborator for accelerating scientific discovery in plant sciences.

Towards a general-purpose foundation model for fMRI analysis

Functional Magnetic Resonance Imaging (fMRI) is essential for studying brain function and diagnosing neurological disorders, but current analysis methods face reproducibility and transferability issues due to complex pre-processing and task-specific models. We introduce NeuroSTORM (Neuroimaging Foundation Model with Spatial-Temporal Optimized Representation Modeling), a generalizable framework that directly learns from 4D fMRI volumes and enables efficient knowledge transfer across diverse applications. NeuroSTORM is pre-trained on 28.65 million fMRI frames (>9,000 hours) from over 50,000 subjects across multiple centers and ages 5 to 100. Using a Mamba backbone and a shifted scanning strategy, it efficiently processes full 4D volumes. We also propose a spatial-temporal optimized pre-training approach and task-specific prompt tuning to improve transferability. NeuroSTORM outperforms existing methods across five tasks: age/gender prediction, phenotype prediction, disease diagnosis, fMRI-to-image retrieval, and task-based fMRI classification. It demonstrates strong clinical utility on datasets from hospitals in the U.S., South Korea, and Australia, achieving top performance in disease diagnosis and cognitive phenotype prediction. NeuroSTORM provides a standardized, open-source foundation model to improve reproducibility and transferability in fMRI-based clinical research.

KITINet: Kinetics Theory Inspired Network Architectures with PDE Simulation Approaches

Despite the widely recognized success of residual connections in modern neural networks, their design principles remain largely heuristic. This paper introduces KITINet (Kinetics Theory Inspired Network), a novel architecture that reinterprets feature propagation through the lens of non-equilibrium particle dynamics and partial differential equation (PDE) simulation. At its core, we propose a residual module that models feature updates as the stochastic evolution of a particle system, numerically simulated via a discretized solver for the Boltzmann transport equation (BTE). This formulation mimics particle collisions and energy exchange, enabling adaptive feature refinement via physics-informed interactions. Additionally, we reveal that this mechanism induces network parameter condensation during training, where parameters progressively concentrate into a sparse subset of dominant channels. Experiments on scientific computation (PDE operator), image classification (CIFAR-10/100), and text classification (IMDb/SNLI) show consistent improvements over classic network baselines, with negligible increase of FLOPs.

Neural Co-Optimization of Structural Topology, Manufacturable Layers, and Path Orientations for Fiber-Reinforced Composites

We propose a neural network-based computational framework for the simultaneous optimization of structural topology, curved layers, and path orientations to achieve strong anisotropic strength in fiber-reinforced thermoplastic composites while ensuring manufacturability. Our framework employs three implicit neural fields to represent geometric shape, layer sequence, and fiber orientation. This enables the direct formulation of both design and manufacturability objectives - such as anisotropic strength, structural volume, machine motion control, layer curvature, and layer thickness - into an integrated and differentiable optimization process. By incorporating these objectives as loss functions, the framework ensures that the resultant composites exhibit optimized mechanical strength while remaining its manufacturability for filament-based multi-axis 3D printing across diverse hardware platforms. Physical experiments demonstrate that the composites generated by our co-optimization method can achieve an improvement of up to 33.1% in failure loads compared to composites with sequentially optimized structures and manufacturing sequences.

Joint 3D Point Cloud Segmentation using Real-Sim Loop: From Panels to Trees and Branches

Modern orchards are planted in structured rows with distinct panel divisions to improve management. Accurate and efficient joint segmentation of point cloud from Panel to Tree and Branch (P2TB) is essential for robotic operations. However, most current segmentation methods focus on single instance segmentation and depend on a sequence of deep networks to perform joint tasks. This strategy hinders the use of hierarchical information embedded in the data, leading to both error accumulation and increased costs for annotation and computation, which limits its scalability for real-world applications. In this study, we proposed a novel approach that incorporated a Real2Sim L-TreeGen for training data generation and a joint model (J-P2TB) designed for the P2TB task. The J-P2TB model, trained on the generated simulation dataset, was used for joint segmentation of real-world panel point clouds via zero-shot learning. Compared to representative methods, our model outperformed them in most segmentation metrics while using 40% fewer learnable parameters. This Sim2Real result highlighted the efficacy of L-TreeGen in model training and the performance of J-P2TB for joint segmentation, demonstrating its strong accuracy, efficiency, and generalizability for real-world applications. These improvements would not only greatly benefit the development of robots for automated orchard operations but also advance digital twin technology.

ERetinex: Event Camera Meets Retinex Theory for Low-Light Image Enhancement

Low-light image enhancement aims to restore the under-exposure image captured in dark scenarios. Under such scenarios, traditional frame-based cameras may fail to capture the structure and color information due to the exposure time limitation. Event cameras are bio-inspired vision sensors that respond to pixel-wise brightness changes asynchronously. Event cameras' high dynamic range is pivotal for visual perception in extreme low-light scenarios, surpassing traditional cameras and enabling applications in challenging dark environments. In this paper, inspired by the success of the retinex theory for traditional frame-based low-light image restoration, we introduce the first methods that combine the retinex theory with event cameras and propose a novel retinex-based low-light image restoration framework named ERetinex. Among our contributions, the first is developing a new approach that leverages the high temporal resolution data from event cameras with traditional image information to estimate scene illumination accurately. This method outperforms traditional image-only techniques, especially in low-light environments, by providing more precise lighting information. Additionally, we propose an effective fusion strategy that combines the high dynamic range data from event cameras with the color information of traditional images to enhance image quality. Through this fusion, we can generate clearer and more detail-rich images, maintaining the integrity of visual information even under extreme lighting conditions. The experimental results indicate that our proposed method outperforms state-of-the-art (SOTA) methods, achieving a gain of 1.0613 dB in PSNR while reducing FLOPS by \textbf{84.28}\%.

Assessing the impacts of tradable credit schemes through agent-based simulation

Tradable credit schemes (TCS) have been attracting interest from the transportation research community as an appealing alternative to congestion pricing, due to the advantages of revenue neutrality and equity. Nonetheless, existing research has largely employed network and market equilibrium approaches with simplistic characterizations of transportation demand, supply, credit market operations, and market behavior. Agent- and activity-based simulation affords a natural means to comprehensively assess TCS by more realistically modeling demand, supply, and individual market interactions. We propose an integrated simulation framework for modeling a TCS, and implements it within the state-of-the-art open-source urban simulation platform SimMobility, including: (a) a flexible TCS design that considers multiple trips and explicitly accounts for individual trading behaviors; (b) a simulation framework that captures the complex interactions between a TCS regulator, the traveler, and the TCS market itself, with the flexibility to test future TCS designs and relevant mobility models; and (c) a set of simulation experiments on a large mesoscopic multimodal network combined with a Bayesian Optimization approach for TCS optimal design. The experiment results indicate network and market performance to stabilize over the day-to-day process, showing the alignment of our agent-based simulation with the known theoretical properties of TCS. We confirm the efficiency of TCS in reducing congestion under the adopted market behavioral assumptions and open the door for simulating different individual behaviors. We measure how TCS impacts differently the local network, heterogeneous users, the different travel behaviors, and how testing different TCS designs can avoid negative market trading behaviors.

KETA: Kinematic-Phrases-Enhanced Text-to-Motion Generation via Fine-grained Alignment

Motion synthesis plays a vital role in various fields of artificial intelligence. Among the various conditions of motion generation, text can describe motion details elaborately and is easy to acquire, making text-to-motion(T2M) generation important. State-of-the-art T2M techniques mainly leverage diffusion models to generate motions with text prompts as guidance, tackling the many-to-many nature of T2M tasks. However, existing T2M approaches face challenges, given the gap between the natural language domain and the physical domain, making it difficult to generate motions fully consistent with the texts. We leverage kinematic phrases(KP), an intermediate representation that bridges these two modalities, to solve this. Our proposed method, KETA, decomposes the given text into several decomposed texts via a language model. It trains an aligner to align decomposed texts with the KP segments extracted from the generated motions. Thus, it's possible to restrict the behaviors for diffusion-based T2M models. During the training stage, we deploy the text-KP alignment loss as an auxiliary goal to supervise the models. During the inference stage, we refine our generated motions for multiple rounds in our decoder structure, where we compute the text-KP distance as the guidance signal in each new round. Experiments demonstrate that KETA achieves up to 1.19x, 2.34x better R precision and FID value on both backbones of the base model, motion diffusion model. Compared to a wide range of T2M generation models. KETA achieves either the best or the second-best performance.

Characteristic-Specific Partial Fine-Tuning for Efficient Emotion and Speaker Adaptation in Codec Language Text-to-Speech Models

Recently, emotional speech generation and speaker cloning have garnered significant interest in text-to-speech (TTS). With the open-sourcing of codec language TTS models trained on massive datasets with large-scale parameters, adapting these general pre-trained TTS models to generate speech with specific emotional expressions and target speaker characteristics has become a topic of great attention. Common approaches, such as full and adapter-based fine-tuning, often overlook the specific contributions of model parameters to emotion and speaker control. Treating all parameters uniformly during fine-tuning, especially when the target data has limited content diversity compared to the pre-training corpus, results in slow training speed and an increased risk of catastrophic forgetting. To address these challenges, we propose a characteristic-specific partial fine-tuning strategy, short as CSP-FT. First, we use a weighted-sum approach to analyze the contributions of different Transformer layers in a pre-trained codec language TTS model for emotion and speaker control in the generated speech. We then selectively fine-tune the layers with the highest and lowest characteristic-specific contributions to generate speech with target emotional expression and speaker identity. Experimental results demonstrate that our method achieves performance comparable to, or even surpassing, full fine-tuning in generating speech with specific emotional expressions and speaker identities. Additionally, CSP-FT delivers approximately 2x faster training speeds, fine-tunes only around 8% of parameters, and significantly reduces catastrophic forgetting. Furthermore, we show that codec language TTS models perform competitively with self-supervised models in speaker identification and emotion classification tasks, offering valuable insights for developing universal speech processing models.