OTF: Optimal Transport based Fusion of Supervised and Self-Supervised Learning Models for Automatic Speech Recognition

Self-Supervised Learning (SSL) Automatic Speech Recognition (ASR) models have shown great promise over Supervised Learning (SL) ones in low-resource settings. However, the advantages of SSL are gradually weakened when the amount of labeled data increases in many industrial applications. To further improve the ASR performance when abundant labels are available, we first explore the potential of combining SL and SSL ASR models via analyzing their complementarity in recognition accuracy and optimization property. Then, we propose a novel Optimal Transport based Fusion (OTF) method for SL and SSL models without incurring extra computation cost in inference. Specifically, optimal transport is adopted to softly align the layer-wise weights to unify the two different networks into a single one. Experimental results on the public 1k-hour English LibriSpeech dataset and our in-house 2.6k-hour Chinese dataset show that OTF largely outperforms the individual models with lower error rates.

Federated and distributed learning applications for electronic health records and structured medical data: A scoping review

Federated learning (FL) has gained popularity in clinical research in recent years to facilitate privacy-preserving collaboration. Structured data, one of the most prevalent forms of clinical data, has experienced significant growth in volume concurrently, notably with the widespread adoption of electronic health records in clinical practice. This review examines FL applications on structured medical data, identifies contemporary limitations and discusses potential innovations. We searched five databases, SCOPUS, MEDLINE, Web of Science, Embase, and CINAHL, to identify articles that applied FL to structured medical data and reported results following the PRISMA guidelines. Each selected publication was evaluated from three primary perspectives, including data quality, modeling strategies, and FL frameworks. Out of the 1160 papers screened, 34 met the inclusion criteria, with each article consisting of one or more studies that used FL to handle structured clinical/medical data. Of these, 24 utilized data acquired from electronic health records, with clinical predictions and association studies being the most common clinical research tasks that FL was applied to. Only one article exclusively explored the vertical FL setting, while the remaining 33 explored the horizontal FL setting, with only 14 discussing comparisons between single-site (local) and FL (global) analysis. The existing FL applications on structured medical data lack sufficient evaluations of clinically meaningful benefits, particularly when compared to single-site analyses. Therefore, it is crucial for future FL applications to prioritize clinical motivations and develop designs and methodologies that can effectively support and aid clinical practice and research.

FedScore: A privacy-preserving framework for federated scoring system development

We propose FedScore, a privacy-preserving federated learning framework for scoring system generation across multiple sites to facilitate cross-institutional collaborations. The FedScore framework includes five modules: federated variable ranking, federated variable transformation, federated score derivation, federated model selection and federated model evaluation. To illustrate usage and assess FedScore's performance, we built a hypothetical global scoring system for mortality prediction within 30 days after a visit to an emergency department using 10 simulated sites divided from a tertiary hospital in Singapore. We employed a pre-existing score generator to construct 10 local scoring systems independently at each site and we also developed a scoring system using centralized data for comparison. We compared the acquired FedScore model's performance with that of other scoring models using the receiver operating characteristic (ROC) analysis. The FedScore model achieved an average area under the curve (AUC) value of 0.763 across all sites, with a standard deviation (SD) of 0.020. We also calculated the average AUC values and SDs for each local model, and the FedScore model showed promising accuracy and stability with a high average AUC value which was closest to the one of the pooled model and SD which was lower than that of most local models. This study demonstrates that FedScore is a privacy-preserving scoring system generator with potentially good generalizability.

UFO2: A unified pre-training framework for online and offline speech recognition

In this paper, we propose a Unified pre-training Framework for Online and Offline (UFO2) Automatic Speech Recognition (ASR), which 1) simplifies the two separate training workflows for online and offline modes into one process, and 2) improves the Word Error Rate (WER) performance with limited utterance annotating. Specifically, we extend the conventional offline-mode Self-Supervised Learning (SSL)-based ASR approach to a unified manner, where the model training is conditioned on both the full-context and dynamic-chunked inputs. To enhance the pre-trained representation model, stop-gradient operation is applied to decouple the online-mode objectives to the quantizer. Moreover, in both the pre-training and the downstream fine-tuning stages, joint losses are proposed to train the unified model with full-weight sharing for the two modes. Experimental results on the LibriSpeech dataset show that UFO2 outperforms the SSL-based baseline method by 29.7% and 18.2% relative WER reduction in offline and online modes, respectively.

Handling missing values in healthcare data: A systematic review of deep learning-based imputation techniques

Objective: The proper handling of missing values is critical to delivering reliable estimates and decisions, especially in high-stakes fields such as clinical research. The increasing diversity and complexity of data have led many researchers to develop deep learning (DL)-based imputation techniques. We conducted a systematic review to evaluate the use of these techniques, with a particular focus on data types, aiming to assist healthcare researchers from various disciplines in dealing with missing values. Methods: We searched five databases (MEDLINE, Web of Science, Embase, CINAHL, and Scopus) for articles published prior to August 2021 that applied DL-based models to imputation. We assessed selected publications from four perspectives: health data types, model backbone (i.e., main architecture), imputation strategies, and comparison with non-DL-based methods. Based on data types, we created an evidence map to illustrate the adoption of DL models. Results: We included 64 articles, of which tabular static (26.6%, 17/64) and temporal data (37.5%, 24/64) were the most frequently investigated. We found that model backbone(s) differed among data types as well as the imputation strategy. The "integrated" strategy, that is, the imputation task being solved concurrently with downstream tasks, was popular for tabular temporal (50%, 12/24) and multi-modal data (71.4%, 5/7), but limited for other data types. Moreover, DL-based imputation methods yielded better imputation accuracy in most studies, compared with non-DL-based methods. Conclusion: DL-based imputation models can be customized based on data type, addressing the corresponding missing patterns, and its associated "integrated" strategy can enhance the efficacy of imputation, especially in scenarios where data is complex. Future research may focus on the portability and fairness of DL-based models for healthcare data imputation.

Parotid Gland MRI Segmentation Based on Swin-Unet and Multimodal Images

Parotid gland tumors account for approximately 2% to 10% of head and neck tumors. Preoperative tumor localization, differential diagnosis, and subsequent selection of appropriate treatment for parotid gland tumors is critical. However, the relative rarity of these tumors and the highly dispersed tissue types have left an unmet need for a subtle differential diagnosis of such neoplastic lesions based on preoperative radiomics. Recently, deep learning methods have developed rapidly, especially Transformer beats the traditional convolutional neural network in computer vision. Many new Transformer-based networks have been proposed for computer vision tasks. In this study, multicenter multimodal parotid gland MRI images were collected. The Swin-Unet which was based on Transformer was used. MRI images of STIR, T1 and T2 modalities were combined into a three-channel data to train the network. We achieved segmentation of the region of interest for parotid gland and tumor. The DSC of the model on the test set was 88.63%, MPA was 99.31%, MIoU was 83.99%, and HD was 3.04. Then a series of comparison experiments were designed in this paper to further validate the segmentation performance of the algorithm.

Investigating End-user Acceptance of Last-mile Delivery by Autonomous Vehicles in the United States

This paper investigates the end-user acceptance of last-mile delivery carried out by autonomous vehicles within the United States. A total of 296 participants were presented with information on this technology and then asked to complete a questionnaire on their perceptions to gauge their behavioral intention concerning acceptance. Structural equation modeling of the partial least squares flavor (PLS-SEM) was employed to analyze the collected data. The results indicated that the perceived usefulness of the technology played the greatest role in end-user acceptance decisions, followed by the influence of others, and then the enjoyment received by interacting with the technology. Furthermore, the perception of risk associated with using autonomous delivery vehicles for last-mile delivery led to a decrease in acceptance. However, most participants did not perceive the use of this technology to be risky. The paper concludes by summarizing the implications our findings have on the respective stakeholders and proposing the next steps in this area of research.

A novel interpretable machine learning system to generate clinical risk scores: An application for predicting early mortality or unplanned readmission in a retrospective cohort study

Risk scores are widely used for clinical decision making and commonly generated from logistic regression models. Machine-learning-based methods may work well for identifying important predictors, but such 'black box' variable selection limits interpretability, and variable importance evaluated from a single model can be biased. We propose a robust and interpretable variable selection approach using the recently developed Shapley variable importance cloud (ShapleyVIC) that accounts for variability across models. Our approach evaluates and visualizes overall variable contributions for in-depth inference and transparent variable selection, and filters out non-significant contributors to simplify model building steps. We derive an ensemble variable ranking from variable contributions, which is easily integrated with an automated and modularized risk score generator, AutoScore, for convenient implementation. In a study of early death or unplanned readmission, ShapleyVIC selected 6 of 41 candidate variables to create a well-performing model, which had similar performance to a 16-variable model from machine-learning-based ranking.

Neural KEM: A Kernel Method with Deep Coefficient Prior for PET Image Reconstruction

Image reconstruction of low-count positron emission tomography (PET) data is challenging. Kernel methods address the challenge by incorporating image prior information in the forward model of iterative PET image reconstruction. The kernelized expectation-maximization (KEM) algorithm has been developed and demonstrated to be effective and easy to implement. A common approach for a further improvement of the kernel method would be adding an explicit regularization, which however leads to a complex optimization problem. In this paper, we propose an implicit regularization for the kernel method by using a deep coefficient prior, which represents the kernel coefficient image in the PET forward model using a convolutional neural-network. To solve the maximum-likelihood neural network-based reconstruction problem, we apply the principle of optimization transfer to derive a neural KEM algorithm. Each iteration of the algorithm consists of two separate steps: a KEM step for image update from the projection data and a deep-learning step in the image domain for updating the kernel coefficient image using the neural network. This optimization algorithm is guaranteed to monotonically increase the data likelihood. The results from computer simulations and real patient data have demonstrated that the neural KEM can outperform existing KEM and deep image prior methods.

Benchmarking Predictive Risk Models for Emergency Departments with Large Public Electronic Health Records

There is a continuously growing demand for emergency department (ED) services across the world, especially under the COVID-19 pandemic. Risk triaging plays a crucial role in prioritizing limited medical resources for patients who need them most. Recently the pervasive use of Electronic Health Records (EHR) has generated a large volume of stored data, accompanied by vast opportunities for the development of predictive models which could improve emergency care. However, there is an absence of widely accepted ED benchmarks based on large-scale public EHR, which new researchers could easily access. Success in filling in this gap could enable researchers to start studies on ED more quickly and conveniently without verbose data preprocessing and facilitate comparisons among different studies and methodologies. In this paper, based on the Medical Information Mart for Intensive Care IV Emergency Department (MIMIC-IV-ED) database, we proposed a public ED benchmark suite and obtained a benchmark dataset containing over 500,000 ED visits episodes from 2011 to 2019. Three ED-based prediction tasks (hospitalization, critical outcomes, and 72-hour ED revisit) were introduced, where various popular methodologies, from machine learning methods to clinical scoring systems, were implemented. The results of their performance were evaluated and compared. Our codes are open-source so that anyone with access to MIMIC-IV-ED could follow the same steps of data processing, build the benchmarks, and reproduce the experiments. This study provided insights, suggestions, as well as protocols for future researchers to process the raw data and quickly build up models for emergency care.