From Narratives to Numbers: Valid Inference Using Language Model Predictions from Verbal Autopsy Narratives

In settings where most deaths occur outside the healthcare system, verbal autopsies (VAs) are a common tool to monitor trends in causes of death (COD). VAs are interviews with a surviving caregiver or relative that are used to predict the decedent's COD. Turning VAs into actionable insights for researchers and policymakers requires two steps (i) predicting likely COD using the VA interview and (ii) performing inference with predicted CODs (e.g. modeling the breakdown of causes by demographic factors using a sample of deaths). In this paper, we develop a method for valid inference using outcomes (in our case COD) predicted from free-form text using state-of-the-art NLP techniques. This method, which we call multiPPI++, extends recent work in "prediction-powered inference" to multinomial classification. We leverage a suite of NLP techniques for COD prediction and, through empirical analysis of VA data, demonstrate the effectiveness of our approach in handling transportability issues. multiPPI++ recovers ground truth estimates, regardless of which NLP model produced predictions and regardless of whether they were produced by a more accurate predictor like GPT-4-32k or a less accurate predictor like KNN. Our findings demonstrate the practical importance of inference correction for public health decision-making and suggests that if inference tasks are the end goal, having a small amount of contextually relevant, high quality labeled data is essential regardless of the NLP algorithm.

SceneTracker: Long-term Scene Flow Estimation Network

Considering the complementarity of scene flow estimation in the spatial domain's focusing capability and 3D object tracking in the temporal domain's coherence, this study aims to address a comprehensive new task that can simultaneously capture fine-grained and long-term 3D motion in an online manner: long-term scene flow estimation (LSFE). We introduce SceneTracker, a novel learning-based LSFE network that adopts an iterative approach to approximate the optimal trajectory. Besides, it dynamically indexes and constructs appearance and depth correlation features simultaneously and employs the Transformer to explore and utilize long-range connections within and between trajectories. With detailed experiments, SceneTracker shows superior capabilities in handling 3D spatial occlusion and depth noise interference, highly tailored to the LSFE task's needs. The code for SceneTracker is available at https://github.com/wwsource/SceneTracker.

Bioinformatics and Biomedical Informatics with ChatGPT: Year One Review

The year 2023 marked a significant surge in the exploration of applying large language model (LLM) chatbots, notably ChatGPT, across various disciplines. We surveyed the applications of ChatGPT in various sectors of bioinformatics and biomedical informatics throughout the year, covering omics, genetics, biomedical text mining, drug discovery, biomedical image understanding, bioinformatics programming, and bioinformatics education. Our survey delineates the current strengths and limitations of this chatbot in bioinformatics and offers insights into potential avenues for future development.

LSKNet: A Foundation Lightweight Backbone for Remote Sensing

Remote sensing images pose distinct challenges for downstream tasks due to their inherent complexity. While a considerable amount of research has been dedicated to remote sensing classification, object detection and semantic segmentation, most of these studies have overlooked the valuable prior knowledge embedded within remote sensing scenarios. Such prior knowledge can be useful because remote sensing objects may be mistakenly recognized without referencing a sufficiently long-range context, which can vary for different objects. This paper considers these priors and proposes a lightweight Large Selective Kernel Network (LSKNet) backbone. LSKNet can dynamically adjust its large spatial receptive field to better model the ranging context of various objects in remote sensing scenarios. To our knowledge, large and selective kernel mechanisms have not been previously explored in remote sensing images. Without bells and whistles, our lightweight LSKNet sets new state-of-the-art scores on standard remote sensing classification, object detection and semantic segmentation benchmarks. Our comprehensive analysis further validated the significance of the identified priors and the effectiveness of LSKNet. The code is available at https://github.com/zcablii/LSKNet.

SurroundSDF: Implicit 3D Scene Understanding Based on Signed Distance Field

Vision-centric 3D environment understanding is both vital and challenging for autonomous driving systems. Recently, object-free methods have attracted considerable attention. Such methods perceive the world by predicting the semantics of discrete voxel grids but fail to construct continuous and accurate obstacle surfaces. To this end, in this paper, we propose SurroundSDF to implicitly predict the signed distance field (SDF) and semantic field for the continuous perception from surround images. Specifically, we introduce a query-based approach and utilize SDF constrained by the Eikonal formulation to accurately describe the surfaces of obstacles. Furthermore, considering the absence of precise SDF ground truth, we propose a novel weakly supervised paradigm for SDF, referred to as the Sandwich Eikonal formulation, which emphasizes applying correct and dense constraints on both sides of the surface, thereby enhancing the perceptual accuracy of the surface. Experiments suggest that our method achieves SOTA for both occupancy prediction and 3D scene reconstruction tasks on the nuScenes dataset.

SARDet-100K: Towards Open-Source Benchmark and ToolKit for Large-Scale SAR Object Detection

Synthetic Aperture Radar (SAR) object detection has gained significant attention recently due to its irreplaceable all-weather imaging capabilities. However, this research field suffers from both limited public datasets (mostly comprising <2K images with only mono-category objects) and inaccessible source code. To tackle these challenges, we establish a new benchmark dataset and an open-source method for large-scale SAR object detection. Our dataset, SARDet-100K, is a result of intense surveying, collecting, and standardizing 10 existing SAR detection datasets, providing a large-scale and diverse dataset for research purposes. To the best of our knowledge, SARDet-100K is the first COCO-level large-scale multi-class SAR object detection dataset ever created. With this high-quality dataset, we conducted comprehensive experiments and uncovered a crucial challenge in SAR object detection: the substantial disparities between the pretraining on RGB datasets and finetuning on SAR datasets in terms of both data domain and model structure. To bridge these gaps, we propose a novel Multi-Stage with Filter Augmentation (MSFA) pretraining framework that tackles the problems from the perspective of data input, domain transition, and model migration. The proposed MSFA method significantly enhances the performance of SAR object detection models while demonstrating exceptional generalizability and flexibility across diverse models. This work aims to pave the way for further advancements in SAR object detection. The dataset and code is available at https://github.com/zcablii/SARDet_100K.

Hide in Thicket: Generating Imperceptible and Rational Adversarial Perturbations on 3D Point Clouds

Adversarial attack methods based on point manipulation for 3D point cloud classification have revealed the fragility of 3D models, yet the adversarial examples they produce are easily perceived or defended against. The trade-off between the imperceptibility and adversarial strength leads most point attack methods to inevitably introduce easily detectable outlier points upon a successful attack. Another promising strategy, shape-based attack, can effectively eliminate outliers, but existing methods often suffer significant reductions in imperceptibility due to irrational deformations. We find that concealing deformation perturbations in areas insensitive to human eyes can achieve a better trade-off between imperceptibility and adversarial strength, specifically in parts of the object surface that are complex and exhibit drastic curvature changes. Therefore, we propose a novel shape-based adversarial attack method, HiT-ADV, which initially conducts a two-stage search for attack regions based on saliency and imperceptibility scores, and then adds deformation perturbations in each attack region using Gaussian kernel functions. Additionally, HiT-ADV is extendable to physical attack. We propose that by employing benign resampling and benign rigid transformations, we can further enhance physical adversarial strength with little sacrifice to imperceptibility. Extensive experiments have validated the superiority of our method in terms of adversarial and imperceptible properties in both digital and physical spaces. Our code is avaliable at: https://github.com/TRLou/HiT-ADV.

A Survey on Human-AI Teaming with Large Pre-Trained Models

In the rapidly evolving landscape of artificial intelligence (AI), the collaboration between human intelligence and AI systems, known as Human-AI (HAI) Teaming, has emerged as a cornerstone for advancing problem-solving and decision-making processes. The advent of Large Pre-trained Models (LPtM) has significantly transformed this landscape, offering unprecedented capabilities by leveraging vast amounts of data to understand and predict complex patterns. This paper surveys the pivotal integration of LPtMs with HAI, emphasizing how these models enhance collaborative intelligence beyond traditional approaches. It examines the synergistic potential of LPtMs in augmenting human capabilities, discussing this collaboration for AI model improvements, effective teaming, ethical considerations, and their broad applied implications in various sectors. Through this exploration, the study sheds light on the transformative impact of LPtM-enhanced HAI Teaming, providing insights for future research, policy development, and strategic implementations aimed at harnessing the full potential of this collaboration for research and societal benefit.

Enhancing Information Maximization with Distance-Aware Contrastive Learning for Source-Free Cross-Domain Few-Shot Learning

Existing Cross-Domain Few-Shot Learning (CDFSL) methods require access to source domain data to train a model in the pre-training phase. However, due to increasing concerns about data privacy and the desire to reduce data transmission and training costs, it is necessary to develop a CDFSL solution without accessing source data. For this reason, this paper explores a Source-Free CDFSL (SF-CDFSL) problem, in which CDFSL is addressed through the use of existing pretrained models instead of training a model with source data, avoiding accessing source data. This paper proposes an Enhanced Information Maximization with Distance-Aware Contrastive Learning (IM-DCL) method to address these challenges. Firstly, we introduce the transductive mechanism for learning the query set. Secondly, information maximization (IM) is explored to map target samples into both individual certainty and global diversity predictions, helping the source model better fit the target data distribution. However, IM fails to learn the decision boundary of the target task. This motivates us to introduce a novel approach called Distance-Aware Contrastive Learning (DCL), in which we consider the entire feature set as both positive and negative sets, akin to Schrodinger's concept of a dual state. Instead of a rigid separation between positive and negative sets, we employ a weighted distance calculation among features to establish a soft classification of the positive and negative sets for the entire feature set. Furthermore, we address issues related to IM by incorporating contrastive constraints between object features and their corresponding positive and negative sets. Evaluations of the 4 datasets in the BSCD-FSL benchmark indicate that the proposed IM-DCL, without accessing the source domain, demonstrates superiority over existing methods, especially in the distant domain task.