Sensitive Data Detection with High-Throughput Machine Learning Models in Electrical Health Records

In the era of big data, there is an increasing need for healthcare providers, communities, and researchers to share data and collaborate to improve health outcomes, generate valuable insights, and advance research. The Health Insurance Portability and Accountability Act of 1996 (HIPAA) is a federal law designed to protect sensitive health information by defining regulations for protected health information (PHI). However, it does not provide efficient tools for detecting or removing PHI before data sharing. One of the challenges in this area of research is the heterogeneous nature of PHI fields in data across different parties. This variability makes rule-based sensitive variable identification systems that work on one database fail on another. To address this issue, our paper explores the use of machine learning algorithms to identify sensitive variables in structured data, thus facilitating the de-identification process. We made a key observation that the distributions of metadata of PHI fields and non-PHI fields are very different. Based on this novel finding, we engineered over 30 features from the metadata of the original features and used machine learning to build classification models to automatically identify PHI fields in structured Electronic Health Record (EHR) data. We trained the model on a variety of large EHR databases from different data sources and found that our algorithm achieves 99% accuracy when detecting PHI-related fields for unseen datasets. The implications of our study are significant and can benefit industries that handle sensitive data.

Ray Conditioning: Trading Photo-consistency for Photo-realism in Multi-view Image Generation

Multi-view image generation attracts particular attention these days due to its promising 3D-related applications, e.g., image viewpoint editing. Most existing methods follow a paradigm where a 3D representation is first synthesized, and then rendered into 2D images to ensure photo-consistency across viewpoints. However, such explicit bias for photo-consistency sacrifices photo-realism, causing geometry artifacts and loss of fine-scale details when these methods are applied to edit real images. To address this issue, we propose ray conditioning, a geometry-free alternative that relaxes the photo-consistency constraint. Our method generates multi-view images by conditioning a 2D GAN on a light field prior. With explicit viewpoint control, state-of-the-art photo-realism and identity consistency, our method is particularly suited for the viewpoint editing task.

A Scalable Test Problem Generator for Sequential Transfer Optimization

Sequential transfer optimization (STO), which aims to improve optimization performance by exploiting knowledge captured from previously-solved optimization tasks stored in a database, has been gaining increasing research attention in recent years. However, despite significant advancements in algorithm design, the test problems in STO are not well designed. Oftentimes, they are either randomly assembled by other benchmark functions that have identical optima or are generated from practical problems that exhibit limited variations. The relationships between the optimal solutions of source and target tasks in these problems are manually configured and thus monotonous, limiting their ability to represent the diverse relationships of real-world problems. Consequently, the promising results achieved by many algorithms on these problems are highly biased and difficult to be generalized to other problems. In light of this, we first introduce a few rudimentary concepts for characterizing STO problems (STOPs) and present an important problem feature overlooked in previous studies, namely similarity distribution, which quantitatively delineates the relationship between the optima of source and target tasks. Then, we propose general design guidelines and a problem generator with superior extendibility. Specifically, the similarity distribution of a problem can be systematically customized by modifying a parameterized density function, enabling a broad spectrum of representation for the diverse similarity relationships of real-world problems. Lastly, a benchmark suite with 12 individual STOPs is developed using the proposed generator, which can serve as an arena for comparing different STO algorithms. The source code of the benchmark suite is available at https://github.com/XmingHsueh/STOP.

Exploring Causes of Demographic Variations In Face Recognition Accuracy

In recent years, media reports have called out bias and racism in face recognition technology. We review experimental results exploring several speculated causes for asymmetric cross-demographic performance. We consider accuracy differences as represented by variations in non-mated (impostor) and / or mated (genuine) distributions for 1-to-1 face matching. Possible causes explored include differences in skin tone, face size and shape, imbalance in number of identities and images in the training data, and amount of face visible in the test data ("face pixels"). We find that demographic differences in face pixel information of the test images appear to most directly impact the resultant differences in face recognition accuracy.

Predicting multiple sclerosis disease severity with multimodal deep neural networks

Multiple Sclerosis (MS) is a chronic disease developed in human brain and spinal cord, which can cause permanent damage or deterioration of the nerves. The severity of MS disease is monitored by the Expanded Disability Status Scale (EDSS), composed of several functional sub-scores. Early and accurate classification of MS disease severity is critical for slowing down or preventing disease progression via applying early therapeutic intervention strategies. Recent advances in deep learning and the wide use of Electronic Health Records (EHR) creates opportunities to apply data-driven and predictive modeling tools for this goal. Previous studies focusing on using single-modal machine learning and deep learning algorithms were limited in terms of prediction accuracy due to the data insufficiency or model simplicity. In this paper, we proposed an idea of using patients' multimodal longitudinal and longitudinal EHR data to predict multiple sclerosis disease severity at the hospital visit. This work has two important contributions. First, we describe a pilot effort to leverage structured EHR data, neuroimaging data and clinical notes to build a multi-modal deep learning framework to predict patient's MS disease severity. The proposed pipeline demonstrates up to 25% increase in terms of the area under the Area Under the Receiver Operating Characteristic curve (AUROC) compared to models using single-modal data. Second, the study also provides insights regarding the amount useful signal embedded in each data modality with respect to MS disease prediction, which may improve data collection processes.

A Transformer-Based Deep Learning Approach for Fairly Predicting Post-Liver Transplant Risk Factors

Liver transplantation is a life-saving procedure for patients with end-stage liver disease. There are two main challenges in liver transplant: finding the best matching patient for a donor and ensuring transplant equity among different subpopulations. The current MELD scoring system evaluates a patient's mortality risk if not receiving an organ within 90 days. However, the donor-patient matching should also take into consideration post-transplant risk factors, such as cardiovascular disease, chronic rejection, etc., which are all common complications after transplant. Accurate prediction of these risk scores remains a significant challenge. In this study, we will use predictive models to solve the above challenge. We propose a deep learning framework model to predict multiple risk factors after a liver transplant. By formulating it as a multi-task learning problem, the proposed deep neural network was trained on this data to simultaneously predict the five post-transplant risks and achieve equally good performance by leveraging task balancing techniques. We also propose a novel fairness achieving algorithm and to ensure prediction fairness across different subpopulations. We used electronic health records of 160,360 liver transplant patients, including demographic information, clinical variables, and laboratory values, collected from the liver transplant records of the United States from 1987 to 2018. The performance of the model was evaluated using various performance metrics such as AUROC, AURPC, and accuracy. The results of our experiments demonstrate that the proposed multitask prediction model achieved high accuracy and good balance in predicting all five post-transplant risk factors, with a maximum accuracy discrepancy of only 2.7%. The fairness-achieving algorithm significantly reduced the fairness disparity compared to the baseline model.

ChatDoctor: A Medical Chat Model Fine-tuned on LLaMA Model using Medical Domain Knowledge

Recent large language models (LLMs) in the general domain, such as ChatGPT, have shown remarkable success in following instructions and producing human-like responses. However, such language models have not been tailored to the medical domain, resulting in poor answer accuracy and inability to give plausible recommendations for medical diagnosis, medications, etc. To address this issue, we collected more than 700 diseases and their corresponding symptoms, required medical tests, and recommended medications, from which we generated 5K doctor-patient conversations. In addition, we obtained 200K real patient-doctor conversations from online Q\&A medical consultation sites. By fine-tuning LLMs using these 205k doctor-patient conversations, the resulting models emerge with great potential to understand patients' needs, provide informed advice, and offer valuable assistance in a variety of medical-related fields. The integration of these advanced language models into healthcare can revolutionize the way healthcare professionals and patients communicate, ultimately improving the overall efficiency and quality of patient care and outcomes. In addition, we made public all the source codes, datasets, and model weights to facilitate the further development of dialogue models in the medical field. The training data, codes, and weights of this project are available at: The training data, codes, and weights of this project are available at: https://github.com/Kent0n-Li/ChatDoctor.

Multi-Task Learning for Post-transplant Cause of Death Analysis: A Case Study on Liver Transplant

Organ transplant is the essential treatment method for some end-stage diseases, such as liver failure. Analyzing the post-transplant cause of death (CoD) after organ transplant provides a powerful tool for clinical decision making, including personalized treatment and organ allocation. However, traditional methods like Model for End-stage Liver Disease (MELD) score and conventional machine learning (ML) methods are limited in CoD analysis due to two major data and model-related challenges. To address this, we propose a novel framework called CoD-MTL leveraging multi-task learning to model the semantic relationships between various CoD prediction tasks jointly. Specifically, we develop a novel tree distillation strategy for multi-task learning, which combines the strength of both the tree model and multi-task learning. Experimental results are presented to show the precise and reliable CoD predictions of our framework. A case study is conducted to demonstrate the clinical importance of our method in the liver transplant.

Towards Fair Patient-Trial Matching via Patient-Criterion Level Fairness Constraint

Clinical trials are indispensable in developing new treatments, but they face obstacles in patient recruitment and retention, hindering the enrollment of necessary participants. To tackle these challenges, deep learning frameworks have been created to match patients to trials. These frameworks calculate the similarity between patients and clinical trial eligibility criteria, considering the discrepancy between inclusion and exclusion criteria. Recent studies have shown that these frameworks outperform earlier approaches. However, deep learning models may raise fairness issues in patient-trial matching when certain sensitive groups of individuals are underrepresented in clinical trials, leading to incomplete or inaccurate data and potential harm. To tackle the issue of fairness, this work proposes a fair patient-trial matching framework by generating a patient-criterion level fairness constraint. The proposed framework considers the inconsistency between the embedding of inclusion and exclusion criteria among patients of different sensitive groups. The experimental results on real-world patient-trial and patient-criterion matching tasks demonstrate that the proposed framework can successfully alleviate the predictions that tend to be biased.

Is Prompt All You Need? No. A Comprehensive and Broader View of Instruction Learning

Task semantics can be expressed by a set of input-to-output examples or a piece of textual instruction. Conventional machine learning approaches for natural language processing (NLP) mainly rely on the availability of large-scale sets of task-specific examples. Two issues arise: first, collecting task-specific labeled examples does not apply to scenarios where tasks may be too complicated or costly to annotate, or the system is required to handle a new task immediately; second, this is not user-friendly since end-users are probably more willing to provide task description rather than a set of examples before using the system. Therefore, the community is paying increasing interest in a new supervision-seeking paradigm for NLP: learning from task instructions. Despite its impressive progress, there are some common issues that the community struggles with. This survey paper tries to summarize the current research on instruction learning, particularly, by answering the following questions: (i) what is task instruction, and what instruction types exist? (ii) how to model instructions? (iii) what factors influence and explain the instructions' performance? (iv) what challenges remain in instruction learning? To our knowledge, this is the first comprehensive survey about textual instructions.