Towards Open Respiratory Acoustic Foundation Models: Pretraining and Benchmarking

Respiratory audio, such as coughing and breathing sounds, has predictive power for a wide range of healthcare applications, yet is currently under-explored. The main problem for those applications arises from the difficulty in collecting large labeled task-specific data for model development. Generalizable respiratory acoustic foundation models pretrained with unlabeled data would offer appealing advantages and possibly unlock this impasse. However, given the safety-critical nature of healthcare applications, it is pivotal to also ensure openness and replicability for any proposed foundation model solution. To this end, we introduce OPERA, an OPEn Respiratory Acoustic foundation model pretraining and benchmarking system, as the first approach answering this need. We curate large-scale respiratory audio datasets (~136K samples, 440 hours), pretrain three pioneering foundation models, and build a benchmark consisting of 19 downstream respiratory health tasks for evaluation. Our pretrained models demonstrate superior performance (against existing acoustic models pretrained with general audio on 16 out of 19 tasks) and generalizability (to unseen datasets and new respiratory audio modalities). This highlights the great promise of respiratory acoustic foundation models and encourages more studies using OPERA as an open resource to accelerate research on respiratory audio for health. The system is accessible from https://github.com/evelyn0414/OPERA.

Intelligent Cardiac Auscultation for Murmur Detection via Parallel-Attentive Models with Uncertainty Estimation

Heart murmurs are a common manifestation of cardiovascular diseases and can provide crucial clues to early cardiac abnormalities. While most current research methods primarily focus on the accuracy of models, they often overlook other important aspects such as the interpretability of machine learning algorithms and the uncertainty of predictions. This paper introduces a heart murmur detection method based on a parallel-attentive model, which consists of two branches: One is based on a self-attention module and the other one is based on a convolutional network. Unlike traditional approaches, this structure is better equipped to handle long-term dependencies in sequential data, and thus effectively captures the local and global features of heart murmurs. Additionally, we acknowledge the significance of understanding the uncertainty of model predictions in the medical field for clinical decision-making. Therefore, we have incorporated an effective uncertainty estimation method based on Monte Carlo Dropout into our model. Furthermore, we have employed temperature scaling to calibrate the predictions of our probabilistic model, enhancing its reliability. In experiments conducted on the CirCor Digiscope dataset for heart murmur detection, our proposed method achieves a weighted accuracy of 79.8% and an F1 of 65.1%, representing state-of-the-art results.

HAFFormer: A Hierarchical Attention-Free Framework for Alzheimer's Disease Detection From Spontaneous Speech

Automatically detecting Alzheimer's Disease (AD) from spontaneous speech plays an important role in its early diagnosis. Recent approaches highly rely on the Transformer architectures due to its efficiency in modelling long-range context dependencies. However, the quadratic increase in computational complexity associated with self-attention and the length of audio poses a challenge when deploying such models on edge devices. In this context, we construct a novel framework, namely Hierarchical Attention-Free Transformer (HAFFormer), to better deal with long speech for AD detection. Specifically, we employ an attention-free module of Multi-Scale Depthwise Convolution to replace the self-attention and thus avoid the expensive computation, and a GELU-based Gated Linear Unit to replace the feedforward layer, aiming to automatically filter out the redundant information. Moreover, we design a hierarchical structure to force it to learn a variety of information grains, from the frame level to the dialogue level. By conducting extensive experiments on the ADReSS-M dataset, the introduced HAFFormer can achieve competitive results (82.6% accuracy) with other recent work, but with significant computational complexity and model size reduction compared to the standard Transformer. This shows the efficiency of HAFFormer in dealing with long audio for AD detection.

TimeSeriesBench: An Industrial-Grade Benchmark for Time Series Anomaly Detection Models

Driven by the proliferation of real-world application scenarios and scales, time series anomaly detection (TSAD) has attracted considerable scholarly and industrial interest. However, existing algorithms exhibit a gap in terms of training paradigm, online detection paradigm, and evaluation criteria when compared to the actual needs of real-world industrial systems. Firstly, current algorithms typically train a specific model for each individual time series. In a large-scale online system with tens of thousands of curves, maintaining such a multitude of models is impractical. The performance of using merely one single unified model to detect anomalies remains unknown. Secondly, most TSAD models are trained on the historical part of a time series and are tested on its future segment. In distributed systems, however, there are frequent system deployments and upgrades, with new, previously unseen time series emerging daily. The performance of testing newly incoming unseen time series on current TSAD algorithms remains unknown. Lastly, although some papers have conducted detailed surveys, the absence of an online evaluation platform prevents answering questions like "Who is the best at anomaly detection at the current stage?" In this paper, we propose TimeSeriesBench, an industrial-grade benchmark that we continuously maintain as a leaderboard. On this leaderboard, we assess the performance of existing algorithms across more than 168 evaluation settings combining different training and testing paradigms, evaluation metrics and datasets. Through our comprehensive analysis of the results, we provide recommendations for the future design of anomaly detection algorithms. To address known issues with existing public datasets, we release an industrial dataset to the public together with TimeSeriesBench. All code, data, and the online leaderboard have been made publicly available.

Customising General Large Language Models for Specialised Emotion Recognition Tasks

The advent of large language models (LLMs) has gained tremendous attention over the past year. Previous studies have shown the astonishing performance of LLMs not only in other tasks but also in emotion recognition in terms of accuracy, universality, explanation, robustness, few/zero-shot learning, and others. Leveraging the capability of LLMs inevitably becomes an essential solution for emotion recognition. To this end, we further comprehensively investigate how LLMs perform in linguistic emotion recognition if we concentrate on this specific task. Specifically, we exemplify a publicly available and widely used LLM -- Chat General Language Model, and customise it for our target by using two different modal adaptation techniques, i.e., deep prompt tuning and low-rank adaptation. The experimental results obtained on six widely used datasets present that the adapted LLM can easily outperform other state-of-the-art but specialised deep models. This indicates the strong transferability and feasibility of LLMs in the field of emotion recognition.

Refashioning Emotion Recognition Modelling: The Advent of Generalised Large Models

After the inception of emotion recognition or affective computing, it has increasingly become an active research topic due to its broad applications. Over the past couple of decades, emotion recognition models have gradually migrated from statistically shallow models to neural network-based deep models, which can significantly boost the performance of emotion recognition models and consistently achieve the best results on different benchmarks. Therefore, in recent years, deep models have always been considered the first option for emotion recognition. However, the debut of large language models (LLMs), such as ChatGPT, has remarkably astonished the world due to their emerged capabilities of zero/few-shot learning, in-context learning, chain-of-thought, and others that are never shown in previous deep models. In the present paper, we comprehensively investigate how the LLMs perform in emotion recognition in terms of diverse aspects, including in-context learning, few-short learning, accuracy, generalisation, and explanation. Moreover, we offer some insights and pose other potential challenges, hoping to ignite broader discussions about enhancing emotion recognition in the new era of advanced and generalised large models.

Cross-device Federated Learning for Mobile Health Diagnostics: A First Study on COVID-19 Detection

Federated learning (FL) aided health diagnostic models can incorporate data from a large number of personal edge devices (e.g., mobile phones) while keeping the data local to the originating devices, largely ensuring privacy. However, such a cross-device FL approach for health diagnostics still imposes many challenges due to both local data imbalance (as extreme as local data consists of a single disease class) and global data imbalance (the disease prevalence is generally low in a population). Since the federated server has no access to data distribution information, it is not trivial to solve the imbalance issue towards an unbiased model. In this paper, we propose FedLoss, a novel cross-device FL framework for health diagnostics. Here the federated server averages the models trained on edge devices according to the predictive loss on the local data, rather than using only the number of samples as weights. As the predictive loss better quantifies the data distribution at a device, FedLoss alleviates the impact of data imbalance. Through a real-world dataset on respiratory sound and symptom-based COVID-$19$ detection task, we validate the superiority of FedLoss. It achieves competitive COVID-$19$ detection performance compared to a centralised model with an AUC-ROC of $79\%$. It also outperforms the state-of-the-art FL baselines in sensitivity and convergence speed. Our work not only demonstrates the promise of federated COVID-$19$ detection but also paves the way to a plethora of mobile health model development in a privacy-preserving fashion.

Indoor simultaneous localization and mapping based on fringe projection profilometry

Simultaneous Localization and Mapping (SLAM) plays an important role in outdoor and indoor applications ranging from autonomous driving to indoor robotics. Outdoor SLAM has been widely used with the assistance of LiDAR or GPS. For indoor applications, the LiDAR technique does not satisfy the accuracy requirement and the GPS signals will be lost. An accurate and efficient scene sensing technique is required for indoor SLAM. As the most promising 3D sensing technique, the opportunities for indoor SLAM with fringe projection profilometry (FPP) systems are obvious, but methods to date have not fully leveraged the accuracy and speed of sensing that such systems offer. In this paper, we propose a novel FPP-based indoor SLAM method based on the coordinate transformation relationship of FPP, where the 2D-to-3D descriptor-assisted is used for mapping and localization. The correspondences generated by matching descriptors are used for fast and accurate mapping, and the transform estimation between the 2D and 3D descriptors is used to localize the sensor. The provided experimental results demonstrate that the proposed indoor SLAM can achieve the localization and mapping accuracy around one millimeter.

A Summary of the ComParE COVID-19 Challenges

The COVID-19 pandemic has caused massive humanitarian and economic damage. Teams of scientists from a broad range of disciplines have searched for methods to help governments and communities combat the disease. One avenue from the machine learning field which has been explored is the prospect of a digital mass test which can detect COVID-19 from infected individuals' respiratory sounds. We present a summary of the results from the INTERSPEECH 2021 Computational Paralinguistics Challenges: COVID-19 Cough, (CCS) and COVID-19 Speech, (CSS).

Benchmarking Uncertainty Quantification on Biosignal Classification Tasks under Dataset Shift

A biosignal is a signal that can be continuously measured from human bodies, such as respiratory sounds, heart activity (ECG), brain waves (EEG), etc, based on which, machine learning models have been developed with very promising performance for automatic disease detection and health status monitoring. However, dataset shift, i.e., data distribution of inference varies from the distribution of the training, is not uncommon for real biosignal-based applications. To improve the robustness, probabilistic models with uncertainty quantification are adapted to capture how reliable a prediction is. Yet, assessing the quality of the estimated uncertainty remains a challenge. In this work, we propose a framework to evaluate the capability of the estimated uncertainty in capturing different types of biosignal dataset shifts with various degrees. In particular, we use three classification tasks based on respiratory sounds and electrocardiography signals to benchmark five representative uncertainty quantification methods. Extensive experiments show that, although Ensemble and Bayesian models could provide relatively better uncertainty estimations under dataset shifts, all tested models fail to meet the promise in trustworthy prediction and model calibration. Our work paves the way for a comprehensive evaluation for any newly developed biosignal classifiers.