Abstract:Soft context compression reduces the computational workload of processing long contexts in LLMs by encoding long context into a smaller number of latent tokens. However, existing frameworks apply uniform compression ratios, failing to account for the extreme variance in natural language information density. While adopting a density-aware dynamic compression ratio seems intuitive, empirical investigations reveal that models struggle intrinsically with operations parameterized by input dependent, continuous structural hyperparameters. To resolve this pitfall, we introduce Semi-Dynamic Context Compression framework. Our approach features a Discrete Ratio Selector, which predicts a compression target based on intrinsic information density and quantizes it to a predefined set of discrete compression ratios. It is efficiently jointly trained with the compressor on synthetic data, with the summary lengths as a proxy to create labels for compression ratio prediction. Extensive evaluations confirm that our density-aware framework, utilizing mean pooling as the backbone, consistently outperforms static baselines, establishing a robust Pareto frontier for context compression techniques. Our code, data and model weights are available at https://github.com/yuyijiong/semi-dynamic-context-compress
Abstract:The rapid evolution toward 6G and beyond communication systems is accelerating the convergence of digital twins and world models at the network edge. Traditional digital twins provide high-fidelity representations of physical systems and support monitoring, analysis, and offline optimization. However, in highly dynamic edge environments, they face limitations in autonomy, adaptability, and scalability. This paper presents a systematic survey of the transition from digital twins to world models and discusses its role in enabling edge general intelligence (EGI). First, the paper clarifies the conceptual differences between digital twins and world models and highlights the shift from physics-based, centralized, and system-centric replicas to data-driven, decentralized, and agent-centric internal models. This discussion helps readers gain a clear understanding of how this transition enables more adaptive, autonomous, and resource-efficient intelligence at the network edge. The paper reviews the design principles, architectures, and key components of world models, including perception, latent state representation, dynamics learning, imagination-based planning, and memory. In addition, it examines the integration of world models and digital twins in wireless EGI systems and surveys emerging applications in integrated sensing and communications, semantic communication, air-ground networks, and low-altitude wireless networks. Finally, this survey provides a systematic roadmap and practical insights for designing world-model-driven edge intelligence systems in wireless and edge computing environments. It also outlines key research challenges and future directions toward scalable, reliable, and interoperable world models for edge-native agentic AI.
Abstract:With recent development of artificial intelligence, it is more common to adopt AI agents in economic activities. This paper explores the economic actions of agents, including human agents and AI agents, in an economic game of trading products/services, and the equilibria in this economy involving multiple agents. We derive a range of equilibrium results and their corresponding conditions using a Markov chain stationary distribution based model. One distinct feature of our model is that we consider the long-term utility generated by economic activities instead of their short-term benefits. For the model consisting of two agents, we fully characterize all the possible economic equilibria and conditions. Interestingly, we show that unless each agent can at least double (not merely increase) its marginal utility by purchasing the other agent's products/services, purchasing the other agent's products/services will not happen in any economic equilibrium. We further extend our results to three and more agents, where we characterize more economic equilibria. We find that in some equilibria, the ``more powerful'' AI agents contribute zero utility to ``less capable'' agents.




Abstract:Cell instance segmentation is a fundamental task in digital pathology with broad clinical applications. Recently, vision foundation models, which are predominantly based on Vision Transformers (ViTs), have achieved remarkable success in pathology image analysis. However, their improvements in cell instance segmentation remain limited. A key challenge arises from the tokenization process in ViTs, which substantially reduces the spatial resolution of input images, leading to suboptimal segmentation quality, especially for small and densely packed cells. To address this problem, we propose CellVTA (Cell Vision Transformer with Adapter), a novel method that improves the performance of vision foundation models for cell instance segmentation by incorporating a CNN-based adapter module. This adapter extracts high-resolution spatial information from input images and injects it into the ViT through a cross-attention mechanism. Our method preserves the core architecture of ViT, ensuring seamless integration with pretrained foundation models. Extensive experiments show that CellVTA achieves 0.538 mPQ on the CoNIC dataset and 0.506 mPQ on the PanNuke dataset, which significantly outperforms the state-of-the-art cell segmentation methods. Ablation studies confirm the superiority of our approach over other fine-tuning strategies, including decoder-only fine-tuning and full fine-tuning. Our code and models are publicly available at https://github.com/JieZheng-ShanghaiTech/CellVTA.
Abstract:Synthetic lethality (SL) is a promising gene interaction for cancer therapy. Recent SL prediction methods integrate knowledge graphs (KGs) into graph neural networks (GNNs) and employ attention mechanisms to extract local subgraphs as explanations for target gene pairs. However, attention mechanisms often lack fidelity, typically generate a single explanation per gene pair, and fail to ensure trustworthy high-order structures in their explanations. To overcome these limitations, we propose Diverse Graph Information Bottleneck for Synthetic Lethality (DGIB4SL), a KG-based GNN that generates multiple faithful explanations for the same gene pair and effectively encodes high-order structures. Specifically, we introduce a novel DGIB objective, integrating a Determinant Point Process (DPP) constraint into the standard IB objective, and employ 13 motif-based adjacency matrices to capture high-order structures in gene representations. Experimental results show that DGIB4SL outperforms state-of-the-art baselines and provides multiple explanations for SL prediction, revealing diverse biological mechanisms underlying SL inference.




Abstract:With the rapid advancements in Large Language Models (LLMs), LLM-based agents have introduced convenient and user-friendly methods for leveraging tools across various domains. In the field of astronomical observation, the construction of new telescopes has significantly increased astronomers' workload. Deploying LLM-powered agents can effectively alleviate this burden and reduce the costs associated with training personnel. Within the Nearby Galaxy Supernovae Survey (NGSS) project, which encompasses eight telescopes across three observation sites, aiming to find the transients from the galaxies in 50 mpc, we have developed the \textbf{StarWhisper Telescope System} to manage the entire observation process. This system automates tasks such as generating observation lists, conducting observations, analyzing data, and providing feedback to the observer. Observation lists are customized for different sites and strategies to ensure comprehensive coverage of celestial objects. After manual verification, these lists are uploaded to the telescopes via the agents in the system, which initiates observations upon neutral language. The observed images are analyzed in real-time, and the transients are promptly communicated to the observer. The agent modifies them into a real-time follow-up observation proposal and send to the Xinglong observatory group chat, then add them to the next-day observation lists. Additionally, the integration of AI agents within the system provides online accessibility, saving astronomers' time and encouraging greater participation from amateur astronomers in the NGSS project.




Abstract:Existing Masked Image Modeling (MIM) depends on a spatial patch-based masking-reconstruction strategy to perceive objects'features from unlabeled images, which may face two limitations when applied to chest CT: 1) inefficient feature learning due to complex anatomical details presented in CT images, and 2) suboptimal knowledge transfer owing to input disparity between upstream and downstream models. To address these issues, we propose a new MIM method named Tissue-Contrastive Semi-Masked Autoencoder (TCS-MAE) for modeling chest CT images. Our method has two novel designs: 1) a tissue-based masking-reconstruction strategy to capture more fine-grained anatomical features, and 2) a dual-AE architecture with contrastive learning between the masked and original image views to bridge the gap of the upstream and downstream models. To validate our method, we systematically investigate representative contrastive, generative, and hybrid self-supervised learning methods on top of tasks involving segmenting pneumonia, mediastinal tumors, and various organs. The results demonstrate that, compared to existing methods, our TCS-MAE more effectively learns tissue-aware representations, thereby significantly enhancing segmentation performance across all tasks.




Abstract:The term credential encompasses educational certificates, degrees, certifications, and government-issued licenses. An occupational credential is a verification of an individuals qualification or competence issued by a third party with relevant authority. Job seekers often leverage such credentials as evidence that desired qualifications are satisfied by their holders. Many U.S. education and workforce development organizations have recognized the importance of credentials for employment and the challenges of understanding the value of credentials. In this study, we identified and ontologically defined credential and credential-related terms at the textual and semantic levels based on the Occupation Ontology (OccO), a BFO-based ontology. Different credential types and their authorization logic are modeled. We additionally defined a high-level hierarchy of credential related terms and relations among many terms, which were initiated in concert with the Alabama Talent Triad (ATT) program, which aims to connect learners, earners, employers and education/training providers through credentials and skills. To our knowledge, our research provides for the first time systematic ontological modeling of the important domain of credentials and related contents, supporting enhanced credential data and knowledge integration in the future.
Abstract:Hypothetical induction is recognized as the main reasoning type when scientists make observations about the world and try to propose hypotheses to explain those observations. Past research on hypothetical induction has a limited setting that (1) the observation annotations of the dataset are not raw web corpus but are manually selected sentences (resulting in a close-domain setting); and (2) the ground truth hypotheses annotations are mostly commonsense knowledge, making the task less challenging. In this work, we propose the first NLP dataset for social science academic hypotheses discovery, consisting of 50 recent papers published in top social science journals. Raw web corpora that are necessary for developing hypotheses in the published papers are also collected in the dataset, with the final goal of creating a system that automatically generates valid, novel, and helpful (to human researchers) hypotheses, given only a pile of raw web corpora. The new dataset can tackle the previous problems because it requires to (1) use raw web corpora as observations; and (2) propose hypotheses even new to humanity. A multi-module framework is developed for the task, as well as three different feedback mechanisms that empirically show performance gain over the base framework. Finally, our framework exhibits high performance in terms of both GPT-4 based evaluation and social science expert evaluation.




Abstract:Genes are fundamental for analyzing biological systems and many recent works proposed to utilize gene expression for various biological tasks by deep learning models. Despite their promising performance, it is hard for deep neural networks to provide biological insights for humans due to their black-box nature. Recently, some works integrated biological knowledge with neural networks to improve the transparency and performance of their models. However, these methods can only incorporate partial biological knowledge, leading to suboptimal performance. In this paper, we propose the Biological Factor Regulatory Neural Network (BFReg-NN), a generic framework to model relations among biological factors in cell systems. BFReg-NN starts from gene expression data and is capable of merging most existing biological knowledge into the model, including the regulatory relations among genes or proteins (e.g., gene regulatory networks (GRN), protein-protein interaction networks (PPI)) and the hierarchical relations among genes, proteins and pathways (e.g., several genes/proteins are contained in a pathway). Moreover, BFReg-NN also has the ability to provide new biologically meaningful insights because of its white-box characteristics. Experimental results on different gene expression-based tasks verify the superiority of BFReg-NN compared with baselines. Our case studies also show that the key insights found by BFReg-NN are consistent with the biological literature.