Efficient Surgical Tool Recognition via HMM-Stabilized Deep Learning

Recognizing various surgical tools, actions and phases from surgery videos is an important problem in computer vision with exciting clinical applications. Existing deep-learning-based methods for this problem either process each surgical video as a series of independent images without considering their dependence, or rely on complicated deep learning models to count for dependence of video frames. In this study, we revealed from exploratory data analysis that surgical videos enjoy relatively simple semantic structure, where the presence of surgical phases and tools can be well modeled by a compact hidden Markov model (HMM). Based on this observation, we propose an HMM-stabilized deep learning method for tool presence detection. A wide range of experiments confirm that the proposed approaches achieve better performance with lower training and running costs, and support more flexible ways to construct and utilize training data in scenarios where not all surgery videos of interest are extensively labelled. These results suggest that popular deep learning approaches with over-complicated model structures may suffer from inefficient utilization of data, and integrating ingredients of deep learning and statistical learning wisely may lead to more powerful algorithms that enjoy competitive performance, transparent interpretation and convenient model training simultaneously.

BASES: Large-scale Web Search User Simulation with Large Language Model based Agents

Due to the excellent capacities of large language models (LLMs), it becomes feasible to develop LLM-based agents for reliable user simulation. Considering the scarcity and limit (e.g., privacy issues) of real user data, in this paper, we conduct large-scale user simulation for web search, to improve the analysis and modeling of user search behavior. Specially, we propose BASES, a novel user simulation framework with LLM-based agents, designed to facilitate comprehensive simulations of web search user behaviors. Our simulation framework can generate unique user profiles at scale, which subsequently leads to diverse search behaviors. To demonstrate the effectiveness of BASES, we conduct evaluation experiments based on two human benchmarks in both Chinese and English, demonstrating that BASES can effectively simulate large-scale human-like search behaviors. To further accommodate the research on web search, we develop WARRIORS, a new large-scale dataset encompassing web search user behaviors, including both Chinese and English versions, which can greatly bolster research in the field of information retrieval. Our code and data will be publicly released soon.

Towards Boosting Many-to-Many Multilingual Machine Translation with Large Language Models

The training paradigm for machine translation has gradually shifted, from learning neural machine translation (NMT) models with extensive parallel corpora to instruction finetuning on pretrained multilingual large language models (LLMs) with high-quality translation pairs. In this paper, we focus on boosting the many-to-many multilingual translation performance of LLMs with an emphasis on zero-shot translation directions. We demonstrate that prompt strategies adopted during instruction finetuning are crucial to zero-shot translation performance and introduce a cross-lingual consistency regularization, XConST, to bridge the representation gap among different languages and improve zero-shot translation performance. XConST is not a new method, but a version of CrossConST (Gao et al., 2023a) adapted for multilingual finetuning on LLMs with translation instructions. Experimental results on ALMA (Xu et al., 2023) and LLaMA-2 (Touvron et al., 2023) show that our approach consistently improves translation performance. Our implementations are available at https://github.com/gpengzhi/CrossConST-LLM.

Joint Diffusion: Mutual Consistency-Driven Diffusion Model for PET-MRI Co-Reconstruction

Positron Emission Tomography and Magnetic Resonance Imaging (PET-MRI) systems can obtain functional and anatomical scans. PET suffers from a low signal-to-noise ratio. Meanwhile, the k-space data acquisition process in MRI is time-consuming. The study aims to accelerate MRI and enhance PET image quality. Conventional approaches involve the separate reconstruction of each modality within PET-MRI systems. However, there exists complementary information among multi-modal images. The complementary information can contribute to image reconstruction. In this study, we propose a novel PET-MRI joint reconstruction model employing a mutual consistency-driven diffusion mode, namely MC-Diffusion. MC-Diffusion learns the joint probability distribution of PET and MRI for utilizing complementary information. We conducted a series of contrast experiments about LPLS, Joint ISAT-net and MC-Diffusion by the ADNI dataset. The results underscore the qualitative and quantitative improvements achieved by MC-Diffusion, surpassing the state-of-the-art method.

A Two-Stage Generative Model with CycleGAN and Joint Diffusion for MRI-based Brain Tumor Detection

Accurate detection and segmentation of brain tumors is critical for medical diagnosis. However, current supervised learning methods require extensively annotated images and the state-of-the-art generative models used in unsupervised methods often have limitations in covering the whole data distribution. In this paper, we propose a novel framework Two-Stage Generative Model (TSGM) that combines Cycle Generative Adversarial Network (CycleGAN) and Variance Exploding stochastic differential equation using joint probability (VE-JP) to improve brain tumor detection and segmentation. The CycleGAN is trained on unpaired data to generate abnormal images from healthy images as data prior. Then VE-JP is implemented to reconstruct healthy images using synthetic paired abnormal images as a guide, which alters only pathological regions but not regions of healthy. Notably, our method directly learned the joint probability distribution for conditional generation. The residual between input and reconstructed images suggests the abnormalities and a thresholding method is subsequently applied to obtain segmentation results. Furthermore, the multimodal results are weighted with different weights to improve the segmentation accuracy further. We validated our method on three datasets, and compared with other unsupervised methods for anomaly detection and segmentation. The DSC score of 0.8590 in BraTs2020 dataset, 0.6226 in ITCS dataset and 0.7403 in In-house dataset show that our method achieves better segmentation performance and has better generalization.

Score-based Diffusion Models With Self-supervised Learning For Accelerated 3D Multi-contrast Cardiac Magnetic Resonance Imaging

Long scan time significantly hinders the widespread applications of three-dimensional multi-contrast cardiac magnetic resonance (3D-MC-CMR) imaging. This study aims to accelerate 3D-MC-CMR acquisition by a novel method based on score-based diffusion models with self-supervised learning. Specifically, we first establish a mapping between the undersampled k-space measurements and the MR images, utilizing a self-supervised Bayesian reconstruction network. Secondly, we develop a joint score-based diffusion model on 3D-MC-CMR images to capture their inherent distribution. The 3D-MC-CMR images are finally reconstructed using the conditioned Langenvin Markov chain Monte Carlo sampling. This approach enables accurate reconstruction without fully sampled training data. Its performance was tested on the dataset acquired by a 3D joint myocardial T1 and T1rho mapping sequence. The T1 and T1rho maps were estimated via a dictionary matching method from the reconstructed images. Experimental results show that the proposed method outperforms traditional compressed sensing and existing self-supervised deep learning MRI reconstruction methods. It also achieves high quality T1 and T1rho parametric maps close to the reference maps obtained by traditional mapping sequences, even at a high acceleration rate of 14.

The CALLA Dataset: Probing LLMs' Interactive Knowledge Acquisition from Chinese Medical Literature

The application of Large Language Models (LLMs) to the medical domain has stimulated the interest of researchers. Recent studies have focused on constructing Instruction Fine-Tuning (IFT) data through medical knowledge graphs to enrich the interactive medical knowledge of LLMs. However, the medical literature serving as a rich source of medical knowledge remains unexplored. Our work introduces the CALLA dataset to probe LLMs' interactive knowledge acquisition from Chinese medical literature. It assesses the proficiency of LLMs in mastering medical knowledge through a free-dialogue fact-checking task. We identify a phenomenon called the ``fact-following response``, where LLMs tend to affirm facts mentioned in questions and display a reluctance to challenge them. To eliminate the inaccurate evaluation caused by this phenomenon, for the golden fact, we artificially construct test data from two perspectives: one consistent with the fact and one inconsistent with the fact. Drawing from the probing experiment on the CALLA dataset, we conclude that IFT data highly correlated with the medical literature corpus serves as a potent catalyst for LLMs, enabling themselves to skillfully employ the medical knowledge acquired during the pre-training phase within interactive scenarios, enhancing accuracy. Furthermore, we design a framework for automatically constructing IFT data based on medical literature and discuss some real-world applications.

GLS-CSC: A Simple but Effective Strategy to Mitigate Chinese STM Models' Over-Reliance on Superficial Clue

Pre-trained models have achieved success in Chinese Short Text Matching (STM) tasks, but they often rely on superficial clues, leading to a lack of robust predictions. To address this issue, it is crucial to analyze and mitigate the influence of superficial clues on STM models. Our study aims to investigate their over-reliance on the edit distance feature, commonly used to measure the semantic similarity of Chinese text pairs, which can be considered a superficial clue. To mitigate STM models' over-reliance on superficial clues, we propose a novel resampling training strategy called Gradually Learn Samples Containing Superficial Clue (GLS-CSC). Through comprehensive evaluations of In-Domain (I.D.), Robustness (Rob.), and Out-Of-Domain (O.O.D.) test sets, we demonstrate that GLS-CSC outperforms existing methods in terms of enhancing the robustness and generalization of Chinese STM models. Moreover, we conduct a detailed analysis of existing methods and reveal their commonality.

Physics-Informed DeepMRI: Bridging the Gap from Heat Diffusion to k-Space Interpolation

In the field of parallel imaging (PI), alongside image-domain regularization methods, substantial research has been dedicated to exploring $k$-space interpolation. However, the interpretability of these methods remains an unresolved issue. Furthermore, these approaches currently face acceleration limitations that are comparable to those experienced by image-domain methods. In order to enhance interpretability and overcome the acceleration limitations, this paper introduces an interpretable framework that unifies both $k$-space interpolation techniques and image-domain methods, grounded in the physical principles of heat diffusion equations. Building upon this foundational framework, a novel $k$-space interpolation method is proposed. Specifically, we model the process of high-frequency information attenuation in $k$-space as a heat diffusion equation, while the effort to reconstruct high-frequency information from low-frequency regions can be conceptualized as a reverse heat equation. However, solving the reverse heat equation poses a challenging inverse problem. To tackle this challenge, we modify the heat equation to align with the principles of magnetic resonance PI physics and employ the score-based generative method to precisely execute the modified reverse heat diffusion. Finally, experimental validation conducted on publicly available datasets demonstrates the superiority of the proposed approach over traditional $k$-space interpolation methods, deep learning-based $k$-space interpolation methods, and conventional diffusion models in terms of reconstruction accuracy, particularly in high-frequency regions.

An Empirical Study of Consistency Regularization for End-to-End Speech-to-Text Translation

Consistency regularization methods, such as R-Drop (Liang et al., 2021) and CrossConST (Gao et al., 2023), have achieved impressive supervised and zero-shot performance in the neural machine translation (NMT) field. Can we also boost end-to-end (E2E) speech-to-text translation (ST) by leveraging consistency regularization? In this paper, we conduct empirical studies on intra-modal and cross-modal consistency and propose two training strategies, SimRegCR and SimZeroCR, for E2E ST in regular and zero-shot scenarios. Experiments on the MuST-C benchmark show that our approaches achieve state-of-the-art (SOTA) performance in most translation directions. The analyses prove that regularization brought by the intra-modal consistency, instead of modality gap, is crucial for the regular E2E ST, and the cross-modal consistency could close the modality gap and boost the zero-shot E2E ST performance.