Speculative RAG: Enhancing Retrieval Augmented Generation through Drafting

Retrieval augmented generation (RAG) combines the generative abilities of large language models (LLMs) with external knowledge sources to provide more accurate and up-to-date responses. Recent RAG advancements focus on improving retrieval outcomes through iterative LLM refinement or self-critique capabilities acquired through additional instruction tuning of LLMs. In this work, we introduce Speculative RAG - a framework that leverages a larger generalist LM to efficiently verify multiple RAG drafts produced in parallel by a smaller, distilled specialist LM. Each draft is generated from a distinct subset of retrieved documents, offering diverse perspectives on the evidence while reducing input token counts per draft. This approach enhances comprehension of each subset and mitigates potential position bias over long context. Our method accelerates RAG by delegating drafting to the smaller specialist LM, with the larger generalist LM performing a single verification pass over the drafts. Extensive experiments demonstrate that Speculative RAG achieves state-of-the-art performance with reduced latency on TriviaQA, MuSiQue, PubHealth, and ARC-Challenge benchmarks. It notably enhances accuracy by up to 12.97% while reducing latency by 51% compared to conventional RAG systems on PubHealth.

ImageFlowNet: Forecasting Multiscale Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

The forecasting of disease progression from images is a holy grail for clinical decision making. However, this task is complicated by the inherent high dimensionality, temporal sparsity and sampling irregularity in longitudinal image acquisitions. Existing methods often rely on extracting hand-crafted features and performing time-series analysis in this vector space, leading to a loss of rich spatial information within the images. To overcome these challenges, we introduce ImageFlowNet, a novel framework that learns latent-space flow fields that evolve multiscale representations in joint embedding spaces using neural ODEs and SDEs to model disease progression in the image domain. Notably, ImageFlowNet learns multiscale joint representation spaces by combining cohorts of patients together so that information can be transferred between the patient samples. The dynamics then provide plausible trajectories of progression, with the SDE providing alternative trajectories from the same starting point. We provide theoretical insights that support our formulation of ODEs, and motivate our regularizations involving high-level visual features, latent space organization, and trajectory smoothness. We then demonstrate ImageFlowNet's effectiveness through empirical evaluations on three longitudinal medical image datasets depicting progression in retinal geographic atrophy, multiple sclerosis, and glioblastoma.

Position Engineering: Boosting Large Language Models through Positional Information Manipulation

The performance of large language models (LLMs) is significantly influenced by the quality of the prompts provided. In response, researchers have developed enormous prompt engineering strategies aimed at modifying the prompt text to enhance task performance. In this paper, we introduce a novel technique termed position engineering, which offers a more efficient way to guide large language models. Unlike prompt engineering, which requires substantial effort to modify the text provided to LLMs, position engineering merely involves altering the positional information in the prompt without modifying the text itself. We have evaluated position engineering in two widely-used LLM scenarios: retrieval-augmented generation (RAG) and in-context learning (ICL). Our findings show that position engineering substantially improves upon the baseline in both cases. Position engineering thus represents a promising new strategy for exploiting the capabilities of large language models.

LLM-RadJudge: Achieving Radiologist-Level Evaluation for X-Ray Report Generation

Evaluating generated radiology reports is crucial for the development of radiology AI, but existing metrics fail to reflect the task's clinical requirements. This study proposes a novel evaluation framework using large language models (LLMs) to compare radiology reports for assessment. We compare the performance of various LLMs and demonstrate that, when using GPT-4, our proposed metric achieves evaluation consistency close to that of radiologists. Furthermore, to reduce costs and improve accessibility, making this method practical, we construct a dataset using LLM evaluation results and perform knowledge distillation to train a smaller model. The distilled model achieves evaluation capabilities comparable to GPT-4. Our framework and distilled model offer an accessible and efficient evaluation method for radiology report generation, facilitating the development of more clinically relevant models. The model will be further open-sourced and accessible.

MetaIE: Distilling a Meta Model from LLM for All Kinds of Information Extraction Tasks

Information extraction (IE) is a fundamental area in natural language processing where prompting large language models (LLMs), even with in-context examples, cannot defeat small LMs tuned on very small IE datasets. We observe that IE tasks, such as named entity recognition and relation extraction, all focus on extracting important information, which can be formalized as a label-to-span matching. In this paper, we propose a novel framework MetaIE to build a small LM as meta-model by learning to extract "important information", i.e., the meta-understanding of IE, so that this meta-model can be adapted to all kind of IE tasks effectively and efficiently. Specifically, MetaIE obtains the small LM via a symbolic distillation from an LLM following the label-to-span scheme. We construct the distillation dataset via sampling sentences from language model pre-training datasets (e.g., OpenWebText in our implementation) and prompting an LLM to identify the typed spans of "important information". We evaluate the meta-model under the few-shot adaptation setting. Extensive results on 13 datasets from 6 IE tasks confirm that MetaIE can offer a better starting point for few-shot tuning on IE datasets and outperform other meta-models from (1) vanilla language model pre-training, (2) multi-IE-task pre-training with human annotations, and (3) single-IE-task symbolic distillation from LLM. Moreover, we provide comprehensive analyses of MetaIE, such as the size of the distillation dataset, the meta-model architecture, and the size of the meta-model.

DOCMASTER: A Unified Platform for Annotation, Training, & Inference in Document Question-Answering

The application of natural language processing models to PDF documents is pivotal for various business applications yet the challenge of training models for this purpose persists in businesses due to specific hurdles. These include the complexity of working with PDF formats that necessitate parsing text and layout information for curating training data and the lack of privacy-preserving annotation tools. This paper introduces DOCMASTER, a unified platform designed for annotating PDF documents, model training, and inference, tailored to document question-answering. The annotation interface enables users to input questions and highlight text spans within the PDF file as answers, saving layout information and text spans accordingly. Furthermore, DOCMASTER supports both state-of-the-art layout-aware and text models for comprehensive training purposes. Importantly, as annotations, training, and inference occur on-device, it also safeguards privacy. The platform has been instrumental in driving several research prototypes concerning document analysis such as the AI assistant utilized by University of California San Diego's (UCSD) International Services and Engagement Office (ISEO) for processing a substantial volume of PDF documents.

LDB: A Large Language Model Debugger via Verifying Runtime Execution Step-by-step

Large language models (LLMs) are leading significant progress in code generation. Beyond one-pass code generation, recent works further integrate unit tests and program verifiers into LLMs to iteratively refine the generated programs. However, these works consider the generated programs as an indivisible entity, which falls short for LLMs in debugging the programs, especially when the programs contain complex logic flows and data operations. In contrast, when human developers debug programs, they typically set breakpoints and selectively examine runtime execution information. The execution flow and the intermediate variables play a crucial role in the debugging process, yet they are underutilized in the existing literature on code generation. In this study, we introduce Large Language Model Debugger (LDB), a novel debugging framework that enables LLMs to refine their generated programs with the runtime execution information. Specifically, LDB segments the programs into basic blocks and tracks the values of intermediate variables after each block throughout the runtime execution. This allows LLMs to concentrate on simpler code units within the overall execution flow, verify their correctness against the task description block by block, and efficiently pinpoint any potential errors. Experiments demonstrate that LDB consistently enhances the baseline performance by up to 9.8% across the HumanEval, MBPP, and TransCoder benchmarks, archiving new state-of-the-art performance in code debugging for various LLM selections.

Answer is All You Need: Instruction-following Text Embedding via Answering the Question

This work aims to build a text embedder that can capture characteristics of texts specified by user instructions. Despite its tremendous potential to deploy user-oriented embeddings, none of previous approaches provides a concrete solution for it. This paper offers a new viewpoint, which treats the instruction as a question about the input text and encodes the expected answers to obtain the representation accordingly. Intuitively, texts with the same (implicit) semantics would share similar answers following the instruction, thus leading to more similar embeddings. Specifically, we propose InBedder that instantiates this embed-via-answering idea by only fine-tuning language models on abstractive question answering tasks. InBedder demonstrates significantly improved instruction-following capabilities according to our proposed instruction awareness tests and instruction robustness tests, when applied to both large language models (LLMs) (e.g., llama-2-7b) and smaller encoder-based LMs (e.g., roberta-large). Additionally, our qualitative analysis of clustering outcomes, achieved by applying different instructions to the same corpus, demonstrates a high degree of interpretability.

The Application of ChatGPT in Responding to Questions Related to the Boston Bowel Preparation Scale

Background: Colonoscopy, a crucial diagnostic tool in gastroenterology, depends heavily on superior bowel preparation. ChatGPT, a large language model with emergent intelligence which also exhibits potential in medical applications. This study aims to assess the accuracy and consistency of ChatGPT in using the Boston Bowel Preparation Scale (BBPS) for colonoscopy assessment. Methods: We retrospectively collected 233 colonoscopy images from 2020 to 2023. These images were evaluated using the BBPS by 3 senior endoscopists and 3 novice endoscopists. Additionally, ChatGPT also assessed these images, having been divided into three groups and undergone specific Fine-tuning. Consistency was evaluated through two rounds of testing. Results: In the initial round, ChatGPT's accuracy varied between 48.93% and 62.66%, trailing the endoscopists' accuracy of 76.68% to 77.83%. Kappa values for ChatGPT was between 0.52 and 0.53, compared to 0.75 to 0.87 for the endoscopists. Conclusion: While ChatGPT shows promise in bowel preparation scoring, it currently does not match the accuracy and consistency of experienced endoscopists. Future research should focus on in-depth Fine-tuning.

Chain-of-Table: Evolving Tables in the Reasoning Chain for Table Understanding

Table-based reasoning with large language models (LLMs) is a promising direction to tackle many table understanding tasks, such as table-based question answering and fact verification. Compared with generic reasoning, table-based reasoning requires the extraction of underlying semantics from both free-form questions and semi-structured tabular data. Chain-of-Thought and its similar approaches incorporate the reasoning chain in the form of textual context, but it is still an open question how to effectively leverage tabular data in the reasoning chain. We propose the Chain-of-Table framework, where tabular data is explicitly used in the reasoning chain as a proxy for intermediate thoughts. Specifically, we guide LLMs using in-context learning to iteratively generate operations and update the table to represent a tabular reasoning chain. LLMs can therefore dynamically plan the next operation based on the results of the previous ones. This continuous evolution of the table forms a chain, showing the reasoning process for a given tabular problem. The chain carries structured information of the intermediate results, enabling more accurate and reliable predictions. Chain-of-Table achieves new state-of-the-art performance on WikiTQ, FeTaQA, and TabFact benchmarks across multiple LLM choices.