OpenKBP-Opt: An international and reproducible evaluation of 76 knowledge-based planning pipelines

We establish an open framework for developing plan optimization models for knowledge-based planning (KBP) in radiotherapy. Our framework includes reference plans for 100 patients with head-and-neck cancer and high-quality dose predictions from 19 KBP models that were developed by different research groups during the OpenKBP Grand Challenge. The dose predictions were input to four optimization models to form 76 unique KBP pipelines that generated 7600 plans. The predictions and plans were compared to the reference plans via: dose score, which is the average mean absolute voxel-by-voxel difference in dose a model achieved; the deviation in dose-volume histogram (DVH) criterion; and the frequency of clinical planning criteria satisfaction. We also performed a theoretical investigation to justify our dose mimicking models. The range in rank order correlation of the dose score between predictions and their KBP pipelines was 0.50 to 0.62, which indicates that the quality of the predictions is generally positively correlated with the quality of the plans. Additionally, compared to the input predictions, the KBP-generated plans performed significantly better (P<0.05; one-sided Wilcoxon test) on 18 of 23 DVH criteria. Similarly, each optimization model generated plans that satisfied a higher percentage of criteria than the reference plans. Lastly, our theoretical investigation demonstrated that the dose mimicking models generated plans that are also optimal for a conventional planning model. This was the largest international effort to date for evaluating the combination of KBP prediction and optimization models. In the interest of reproducibility, our data and code is freely available at https://github.com/ababier/open-kbp-opt.

Attend to Who You Are: Supervising Self-Attention for Keypoint Detection and Instance-Aware Association

This paper presents a new method to solve keypoint detection and instance association by using Transformer. For bottom-up multi-person pose estimation models, they need to detect keypoints and learn associative information between keypoints. We argue that these problems can be entirely solved by Transformer. Specifically, the self-attention in Transformer measures dependencies between any pair of locations, which can provide association information for keypoints grouping. However, the naive attention patterns are still not subjectively controlled, so there is no guarantee that the keypoints will always attend to the instances to which they belong. To address it we propose a novel approach of supervising self-attention for multi-person keypoint detection and instance association. By using instance masks to supervise self-attention to be instance-aware, we can assign the detected keypoints to their corresponding instances based on the pairwise attention scores, without using pre-defined offset vector fields or embedding like CNN-based bottom-up models. An additional benefit of our method is that the instance segmentation results of any number of people can be directly obtained from the supervised attention matrix, thereby simplifying the pixel assignment pipeline. The experiments on the COCO multi-person keypoint detection challenge and person instance segmentation task demonstrate the effectiveness and simplicity of the proposed method and show a promising way to control self-attention behavior for specific purposes.

Persia: An Open, Hybrid System Scaling Deep Learning-based Recommenders up to 100 Trillion Parameters

Deep learning based models have dominated the current landscape of production recommender systems. Furthermore, recent years have witnessed an exponential growth of the model scale--from Google's 2016 model with 1 billion parameters to the latest Facebook's model with 12 trillion parameters. Significant quality boost has come with each jump of the model capacity, which makes us believe the era of 100 trillion parameters is around the corner. However, the training of such models is challenging even within industrial scale data centers. This difficulty is inherited from the staggering heterogeneity of the training computation--the model's embedding layer could include more than 99.99% of the total model size, which is extremely memory-intensive; while the rest neural network is increasingly computation-intensive. To support the training of such huge models, an efficient distributed training system is in urgent need. In this paper, we resolve this challenge by careful co-design of both the optimization algorithm and the distributed system architecture. Specifically, in order to ensure both the training efficiency and the training accuracy, we design a novel hybrid training algorithm, where the embedding layer and the dense neural network are handled by different synchronization mechanisms; then we build a system called Persia (short for parallel recommendation training system with hybrid acceleration) to support this hybrid training algorithm. Both theoretical demonstration and empirical study up to 100 trillion parameters have conducted to justified the system design and implementation of Persia. We make Persia publicly available (at https://github.com/PersiaML/Persia) so that anyone would be able to easily train a recommender model at the scale of 100 trillion parameters.

Persia: A Hybrid System Scaling Deep Learning Based Recommenders up to 100 Trillion Parameters

Deep learning based models have dominated the current landscape of production recommender systems. Furthermore, recent years have witnessed an exponential growth of the model scale--from Google's 2016 model with 1 billion parameters to the latest Facebook's model with 12 trillion parameters. Significant quality boost has come with each jump of the model capacity, which makes us believe the era of 100 trillion parameters is around the corner. However, the training of such models is challenging even within industrial scale data centers. This difficulty is inherited from the staggering heterogeneity of the training computation--the model's embedding layer could include more than 99.99% of the total model size, which is extremely memory-intensive; while the rest neural network is increasingly computation-intensive. To support the training of such huge models, an efficient distributed training system is in urgent need. In this paper, we resolve this challenge by careful co-design of both the optimization algorithm and the distributed system architecture. Specifically, in order to ensure both the training efficiency and the training accuracy, we design a novel hybrid training algorithm, where the embedding layer and the dense neural network are handled by different synchronization mechanisms; then we build a system called Persia (short for parallel recommendation training system with hybrid acceleration) to support this hybrid training algorithm. Both theoretical demonstration and empirical study up to 100 trillion parameters have conducted to justified the system design and implementation of Persia. We make Persia publicly available (at https://github.com/PersiaML/Persia) so that anyone would be able to easily train a recommender model at the scale of 100 trillion parameters.

Joint Channel and Weight Pruning for Model Acceleration on Moblie Devices

For practical deep neural network design on mobile devices, it is essential to consider the constraints incurred by the computational resources and the inference latency in various applications. Among deep network acceleration related approaches, pruning is a widely adopted practice to balance the computational resource consumption and the accuracy, where unimportant connections can be removed either channel-wisely or randomly with a minimal impact on model accuracy. The channel pruning instantly results in a significant latency reduction, while the random weight pruning is more flexible to balance the latency and accuracy. In this paper, we present a unified framework with Joint Channel pruning and Weight pruning (JCW), and achieves a better Pareto-frontier between the latency and accuracy than previous model compression approaches. To fully optimize the trade-off between the latency and accuracy, we develop a tailored multi-objective evolutionary algorithm in the JCW framework, which enables one single search to obtain the optimal candidate architectures for various deployment requirements. Extensive experiments demonstrate that the JCW achieves a better trade-off between the latency and accuracy against various state-of-the-art pruning methods on the ImageNet classification dataset. Our codes are available at https://github.com/jcw-anonymous/JCW.

ProxyBO: Accelerating Neural Architecture Search via Bayesian Optimization with Zero-cost Proxies

Designing neural architectures requires immense manual efforts. This has promoted the development of neural architecture search (NAS) to automate this design. While previous NAS methods achieve promising results but run slowly and zero-cost proxies run extremely fast but are less promising, recent work considers utilizing zero-cost proxies via a simple warm-up. The existing method has two limitations, which are unforeseeable reliability and one-shot usage. To address the limitations, we present ProxyBO, an efficient Bayesian optimization framework that utilizes the zero-cost proxies to accelerate neural architecture search. We propose the generalization ability measurement to estimate the fitness of proxies on the task during each iteration and then combine BO with zero-cost proxies via dynamic influence combination. Extensive empirical studies show that ProxyBO consistently outperforms competitive baselines on five tasks from three public benchmarks. Concretely, ProxyBO achieves up to 5.41x and 3.83x speedups over the state-of-the-art approach REA and BRP-NAS, respectively.

Investigating Non-local Features for Neural Constituency Parsing

Thanks to the strong representation power of neural encoders, neural chart-based parsers have achieved highly competitive performance by using local features. Recently, it has been shown that non-local features in CRF structures lead to improvements. In this paper, we investigate injecting non-local features into the training process of a local span-based parser, by predicting constituent n-gram non-local patterns and ensuring consistency between non-local patterns and local constituents. Results show that our simple method gives better results than the CRF parser on both PTB and CTB. Besides, our method achieves state-of-the-art BERT-based performance on PTB (95.92 F1) and strong performance on CTB (92.31 F1).

Deep Learning Model for Demodulation Reference Signal based Channel Estimation

In this paper, we propose a deep learning model for Demodulation Reference Signal (DMRS) based channel estimation task. Specifically, a novel Denoise, Linear interpolation and Refine (DLR) pipeline is proposed to mitigate the noise propagation problem during channel information interpolation and to restore the nonlinear variation of wireless channel over time. At the same time, the Small-norm Sample Cost-sensitive (SSC) learning method is proposed to equalize the qualities of channel estimation under different kinds of wireless environments and improve the channel estimation reliability. The effectiveness of the propose DLR-SSC model is verified on WAIC Dataset. Compared with the well know ChannelNet channel estimation model, our DLR-SSC model reduced normalized mean square error (NMSE) by 27.2dB, 22.4dB and 16.8dB respectively at 0dB, 10dB, and 20dB SNR. The proposed model has won the second place in the 2nd Wireless Communication Artificial Intelligence Competition (WAIC). The code is about to open source.

Sk-Unet Model with Fourier Domain for Mitosis Detection

Mitotic count is the most important morphological feature of breast cancer grading. Many deep learning-based methods have been proposed but suffer from domain shift. In this work, we construct a Fourier-based segmentation model for mitosis detection to address the problem. Swapping the low-frequency spectrum of source and target images is shown effective to alleviate the discrepancy between different scanners. Our Fourier-based segmentation method can achieve F1 with 0.7456 on the preliminary test set.