Self-supervised representation learning has been highly promising for histopathology image analysis with numerous approaches leveraging their patient-slide-patch hierarchy to learn better representations. In this paper, we explore how the combination of domain specific natural language information with such hierarchical visual representations can benefit rich representation learning for medical image tasks. Building on automated language description generation for features visible in histopathology images, we present a novel language-tied self-supervised learning framework, Hierarchical Language-tied Self-Supervision (HLSS) for histopathology images. We explore contrastive objectives and granular language description based text alignment at multiple hierarchies to inject language modality information into the visual representations. Our resulting model achieves state-of-the-art performance on two medical imaging benchmarks, OpenSRH and TCGA datasets. Our framework also provides better interpretability with our language aligned representation space. Code is available at https://github.com/Hasindri/HLSS.
In the image acquisition process, various forms of degradation, including noise, haze, and rain, are frequently introduced. These degradations typically arise from the inherent limitations of cameras or unfavorable ambient conditions. To recover clean images from degraded versions, numerous specialized restoration methods have been developed, each targeting a specific type of degradation. Recently, all-in-one algorithms have garnered significant attention by addressing different types of degradations within a single model without requiring prior information of the input degradation type. However, these methods purely operate in the spatial domain and do not delve into the distinct frequency variations inherent to different degradation types. To address this gap, we propose an adaptive all-in-one image restoration network based on frequency mining and modulation. Our approach is motivated by the observation that different degradation types impact the image content on different frequency subbands, thereby requiring different treatments for each restoration task. Specifically, we first mine low- and high-frequency information from the input features, guided by the adaptively decoupled spectra of the degraded image. The extracted features are then modulated by a bidirectional operator to facilitate interactions between different frequency components. Finally, the modulated features are merged into the original input for a progressively guided restoration. With this approach, the model achieves adaptive reconstruction by accentuating the informative frequency subbands according to different input degradations. Extensive experiments demonstrate that the proposed method achieves state-of-the-art performance on different image restoration tasks, including denoising, dehazing, deraining, motion deblurring, and low-light image enhancement. Our code is available at https://github.com/c-yn/AdaIR.
Given the large-scale multi-modal training of recent vision-based models and their generalization capabilities, understanding the extent of their robustness is critical for their real-world deployment. In this work, we evaluate the resilience of current vision-based models against diverse object-to-background context variations. The majority of robustness evaluation methods have introduced synthetic datasets to induce changes to object characteristics (viewpoints, scale, color) or utilized image transformation techniques (adversarial changes, common corruptions) on real images to simulate shifts in distributions. Recent works have explored leveraging large language models and diffusion models to generate changes in the background. However, these methods either lack in offering control over the changes to be made or distort the object semantics, making them unsuitable for the task. Our method, on the other hand, can induce diverse object-to-background changes while preserving the original semantics and appearance of the object. To achieve this goal, we harness the generative capabilities of text-to-image, image-to-text, and image-to-segment models to automatically generate a broad spectrum of object-to-background changes. We induce both natural and adversarial background changes by either modifying the textual prompts or optimizing the latents and textual embedding of text-to-image models. This allows us to quantify the role of background context in understanding the robustness and generalization of deep neural networks. We produce various versions of standard vision datasets (ImageNet, COCO), incorporating either diverse and realistic backgrounds into the images or introducing color, texture, and adversarial changes in the background. We conduct extensive experiment to analyze the robustness of vision-based models against object-to-background context variations across diverse tasks.
Recent advances in unsupervised learning have demonstrated the ability of large vision models to achieve promising results on downstream tasks by pre-training on large amount of unlabelled data. Such pre-training techniques have also been explored recently in the remote sensing domain due to the availability of large amount of unlabelled data. Different from standard natural image datasets, remote sensing data is acquired from various sensor technologies and exhibit diverse range of scale variations as well as modalities. Existing satellite image pre-training methods either ignore the scale information present in the remote sensing imagery or restrict themselves to use only a single type of data modality. In this paper, we re-visit transformers pre-training and leverage multi-scale information that is effectively utilized with multiple modalities. Our proposed approach, named SatMAE++, performs multi-scale pre-training and utilizes convolution based upsampling blocks to reconstruct the image at higher scales making it extensible to include more scales. Compared to existing works, the proposed SatMAE++ with multi-scale pre-training is equally effective for both optical as well as multi-spectral imagery. Extensive experiments on six datasets reveal the merits of proposed contributions, leading to state-of-the-art performance on all datasets. SatMAE++ achieves mean average precision (mAP) gain of 2.5\% for multi-label classification task on BigEarthNet dataset. Our code and pre-trained models are available at \url{https://github.com/techmn/satmae_pp}.
In pursuit of more inclusive Vision-Language Models (VLMs), this study introduces a Large Multilingual Multimodal Model called PALO. PALO offers visual reasoning capabilities in 10 major languages, including English, Chinese, Hindi, Spanish, French, Arabic, Bengali, Russian, Urdu, and Japanese, that span a total of ~5B people (65% of the world population). Our approach involves a semi-automated translation approach to adapt the multimodal instruction dataset from English to the target languages using a fine-tuned Large Language Model, thereby ensuring high linguistic fidelity while allowing scalability due to minimal manual effort. The incorporation of diverse instruction sets helps us boost overall performance across multiple languages especially those that are underrepresented like Hindi, Arabic, Bengali, and Urdu. The resulting models are trained across three scales (1.7B, 7B and 13B parameters) to show the generalization and scalability where we observe substantial improvements compared to strong baselines. We also propose the first multilingual multimodal benchmark for the forthcoming approaches to evaluate their vision-language reasoning capabilities across languages. Code: https://github.com/mbzuai-oryx/PALO.
Volumetric medical segmentation is a critical component of 3D medical image analysis that delineates different semantic regions. Deep neural networks have significantly improved volumetric medical segmentation, but they generally require large-scale annotated data to achieve better performance, which can be expensive and prohibitive to obtain. To address this limitation, existing works typically perform transfer learning or design dedicated pretraining-finetuning stages to learn representative features. However, the mismatch between the source and target domain can make it challenging to learn optimal representation for volumetric data, while the multi-stage training demands higher compute as well as careful selection of stage-specific design choices. In contrast, we propose a universal training framework called MedContext that is architecture-agnostic and can be incorporated into any existing training framework for 3D medical segmentation. Our approach effectively learns self supervised contextual cues jointly with the supervised voxel segmentation task without requiring large-scale annotated volumetric medical data or dedicated pretraining-finetuning stages. The proposed approach induces contextual knowledge in the network by learning to reconstruct the missing organ or parts of an organ in the output segmentation space. The effectiveness of MedContext is validated across multiple 3D medical datasets and four state-of-the-art model architectures. Our approach demonstrates consistent gains in segmentation performance across datasets and different architectures even in few-shot data scenarios. Our code and pretrained models are available at https://github.com/hananshafi/MedContext
"Bigger the better" has been the predominant trend in recent Large Language Models (LLMs) development. However, LLMs do not suit well for scenarios that require on-device processing, energy efficiency, low memory footprint, and response efficiency. These requisites are crucial for privacy, security, and sustainable deployment. This paper explores the "less is more" paradigm by addressing the challenge of designing accurate yet efficient Small Language Models (SLMs) for resource constrained devices. Our primary contribution is the introduction of an accurate and fully transparent open-source 0.5 billion (0.5B) parameter SLM, named MobiLlama, catering to the specific needs of resource-constrained computing with an emphasis on enhanced performance with reduced resource demands. MobiLlama is a SLM design that initiates from a larger model and applies a careful parameter sharing scheme to reduce both the pre-training and the deployment cost. Our work strives to not only bridge the gap in open-source SLMs but also ensures full transparency, where complete training data pipeline, training code, model weights, and over 300 checkpoints along with evaluation codes is available at : https://github.com/mbzuai-oryx/MobiLlama.
In this paper, we introduce BiMediX, the first bilingual medical mixture of experts LLM designed for seamless interaction in both English and Arabic. Our model facilitates a wide range of medical interactions in English and Arabic, including multi-turn chats to inquire about additional details such as patient symptoms and medical history, multiple-choice question answering, and open-ended question answering. We propose a semi-automated English-to-Arabic translation pipeline with human refinement to ensure high-quality translations. We also introduce a comprehensive evaluation benchmark for Arabic medical LLMs. Furthermore, we introduce BiMed1.3M, an extensive Arabic-English bilingual instruction set covering 1.3 Million diverse medical interactions, resulting in over 632 million healthcare specialized tokens for instruction tuning. Our BiMed1.3M dataset includes 250k synthesized multi-turn doctor-patient chats and maintains a 1:2 Arabic-to-English ratio. Our model outperforms state-of-the-art Med42 and Meditron by average absolute gains of 2.5% and 4.1%, respectively, computed across multiple medical evaluation benchmarks in English, while operating at 8-times faster inference. Moreover, our BiMediX outperforms the generic Arabic-English bilingual LLM, Jais-30B, by average absolute gains of 10% on our Arabic medical benchmark and 15% on bilingual evaluations across multiple datasets. Our project page with source code and trained model is available at https://github.com/mbzuai-oryx/BiMediX .