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Common Limitations of Image Processing Metrics: A Picture Story


Apr 13, 2021
Annika Reinke, Matthias Eisenmann, Minu D. Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin Kurc, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus Maier-Hein, Bjoern Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein

* This is a dynamic paper on limitations of commonly used metrics. The current version discusses segmentation metrics only, while future versions will also include metrics for classification and detection. For missing use cases, comments or questions, please contact [email protected] or [email protected]. Substantial contributions to this document will be acknowledged with a co-authorship 

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MIcro-Surgical Anastomose Workflow recognition challenge report


Mar 24, 2021
Arnaud Huaulmé, Duygu Sarikaya, Kévin Le Mut, Fabien Despinoy, Yonghao Long, Qi Dou, Chin-Boon Chng, Wenjun Lin, Satoshi Kondo, Laura Bravo-Sánchez, Pablo Arbeláez, Wolfgang Reiter, Manoru Mitsuishi, Kanako Harada, Pierre Jannin

* MICCAI2020 challenge report, 36 pages including 15 for supplementary material (complet results for each participating teams), 17 figures 

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Surgical Data Science -- from Concepts to Clinical Translation


Oct 30, 2020
Lena Maier-Hein, Matthias Eisenmann, Duygu Sarikaya, Keno März, Toby Collins, Anand Malpani, Johannes Fallert, Hubertus Feussner, Stamatia Giannarou, Pietro Mascagni, Hirenkumar Nakawala, Adrian Park, Carla Pugh, Danail Stoyanov, Swaroop S. Vedula, Beat Peter Müller, Kevin Cleary, Gabor Fichtinger, Germain Forestier, Bernard Gibaud, Teodor Grantcharov, Makoto Hashizume, Hannes Kenngott, Ron Kikinis, Lars Mündermann, Nassir Navab, Sinan Onogur, Raphael Sznitman, Russell Taylor, Minu Dietlinde Tizabi, Martin Wagner, Gregory D. Hager, Thomas Neumuth, Nicolas Padoy, Pierre Jannin, Stefanie Speidel


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Towards Generalizable Surgical Activity Recognition Using Spatial Temporal Graph Convolutional Networks


Jan 16, 2020
Duygu Sarikaya, Pierre Jannin


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BIAS: Transparent reporting of biomedical image analysis challenges


Oct 23, 2019
Lena Maier-Hein, Annika Reinke, Michal Kozubek, Anne L. Martel, Tal Arbel, Matthias Eisenmann, Allan Hanbuary, Pierre Jannin, Henning Müller, Sinan Onogur, Julio Saez-Rodriguez, Bram van Ginneken, Annette Kopp-Schneider, Bennett Landman

* 4 Supplements: Suppl 1: Reviewer checklist Suppl 2: Gloassary Suppl 3: Form for summarizing information on challenge organization Suppl 4: Structured description of a challenge design 

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Offline identification of surgical deviations in laparoscopic rectopexy


Sep 24, 2019
Arnaud Huaulmé, Sandrine Voros, Fabian Reche, Jean-Luc Faucheron, Alexandre Moreau-Gaudry, Pierre Jannin


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Surgical Gesture Recognition with Optical Flow only


Apr 01, 2019
Duygu Sarikaya, Pierre Jannin


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Knowledge transfer for surgical activity prediction


Nov 15, 2017
Olga Dergachyova, Xavier Morandi, Pierre Jannin


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