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MammoDL: Mammographic Breast Density Estimation using Federated Learning



Keshava Katti , Ramya Muthukrishnan , Angelina Heyler , Sarthak Pati , Aprupa Alahari , Michael Sanborn , Emily F. Conant , Christopher Scott , Stacey Winham , Celine Vachon , Pratik Chaudhari , Despina Kontos , Spyridon Bakas

* Breast Cancer Risk, Digital Mammography, Breast Density, Deep Learning, Machine Learning, Federated Learning, OpenFL 

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Metrics reloaded: Pitfalls and recommendations for image analysis validation



Lena Maier-Hein , Annika Reinke , Evangelia Christodoulou , Ben Glocker , Patrick Godau , Fabian Isensee , Jens Kleesiek , Michal Kozubek , Mauricio Reyes , Michael A. Riegler , Manuel Wiesenfarth , Michael Baumgartner , Matthias Eisenmann , Doreen Heckmann-N√∂tzel , A. Emre Kavur , Tim R√§dsch , Minu D. Tizabi , Laura Acion , Michela Antonelli , Tal Arbel , Spyridon Bakas , Peter Bankhead , Arriel Benis , M. Jorge Cardoso , Veronika Cheplygina , Beth Cimini , Gary S. Collins , Keyvan Farahani , Bram van Ginneken , Daniel A. Hashimoto , Michael M. Hoffman , Merel Huisman , Pierre Jannin , Charles E. Kahn , Alexandros Karargyris , Alan Karthikesalingam , Hannes Kenngott , Annette Kopp-Schneider , Anna Kreshuk , Tahsin Kurc , Bennett A. Landman , Geert Litjens , Amin Madani , Klaus Maier-Hein , Anne L. Martel , Peter Mattson , Erik Meijering , Bjoern Menze , David Moher , Karel G. M. Moons , Henning M√ľller , Felix Nickel , Brennan Nichyporuk , Jens Petersen , Nasir Rajpoot , Nicola Rieke , Julio Saez-Rodriguez , Clarisa S√°nchez Guti√©rrez , Shravya Shetty , Maarten van Smeden , Carole H. Sudre , Ronald M. Summers , Abdel A. Taha , Sotirios A. Tsaftaris , Ben Van Calster , Ga√ęl Varoquaux , Paul F. J√§ger

* Shared first authors: Lena Maier-Hein, Annika Reinke. arXiv admin note: substantial text overlap with arXiv:2104.05642 

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Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings



Florian Kofler , Ivan Ezhov , Lucas Fidon , Izabela Horvath , Ezequiel de la Rosa , John LaMaster , Hongwei Li , Tom Finck , Suprosanna Shit , Johannes Paetzold , Spyridon Bakas , Marie Piraud , Jan Kirschke , Tom Vercauteren , Claus Zimmer , Benedikt Wiestler , Bjoern Menze

* 11 pages, 5 figures 

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Federated Learning Enables Big Data for Rare Cancer Boundary Detection



Sarthak Pati , Ujjwal Baid , Brandon Edwards , Micah Sheller , Shih-Han Wang , G Anthony Reina , Patrick Foley , Alexey Gruzdev , Deepthi Karkada , Christos Davatzikos , Chiharu Sako , Satyam Ghodasara , Michel Bilello , Suyash Mohan , Philipp Vollmuth , Gianluca Brugnara , Chandrakanth J Preetha , Felix Sahm , Klaus Maier-Hein , Maximilian Zenk , Martin Bendszus , Wolfgang Wick , Evan Calabrese , Jeffrey Rudie , Javier Villanueva-Meyer , Soonmee Cha , Madhura Ingalhalikar , Manali Jadhav , Umang Pandey , Jitender Saini , John Garrett , Matthew Larson , Robert Jeraj , Stuart Currie , Russell Frood , Kavi Fatania , Raymond Y Huang , Ken Chang , Carmen Balana , Jaume Capellades , Josep Puig , Johannes Trenkler , Josef Pichler , Georg Necker , Andreas Haunschmidt , Stephan Meckel , Gaurav Shukla , Spencer Liem , Gregory S Alexander , Joseph Lombardo , Joshua D Palmer , Adam E Flanders , Adam P Dicker , Haris I Sair , Craig K Jones , Archana Venkataraman , Meirui Jiang , Tiffany Y So , Cheng Chen , Pheng Ann Heng , Qi Dou , Michal Kozubek , Filip Lux , Jan Mich√°lek , Petr Matula , MiloŇ° KeŇôkovsk√Ĺ , Tereza KopŇôivov√° , Marek Dost√°l , V√°clav Vyb√≠hal , Michael A Vogelbaum , J Ross Mitchell , Joaquim Farinhas , Joseph A Maldjian , Chandan Ganesh Bangalore Yogananda , Marco C Pinho , Divya Reddy , James Holcomb , Benjamin C Wagner , Benjamin M Ellingson , Timothy F Cloughesy , Catalina Raymond , Talia Oughourlian , Akifumi Hagiwara , Chencai Wang , Minh-Son To , Sargam Bhardwaj , Chee Chong , Marc Agzarian , Alexandre Xavier Falc√£o , Samuel B Martins , Bernardo C A Teixeira , Fl√°via Sprenger , David Menotti , Diego R Lucio , Pamela LaMontagne , Daniel Marcus , Benedikt Wiestler , Florian Kofler , Ivan Ezhov , Marie Metz , Rajan Jain , Matthew Lee , Yvonne W Lui , Richard McKinley , Johannes Slotboom , Piotr Radojewski , Raphael Meier , Roland Wiest , Derrick Murcia , Eric Fu , Rourke Haas , John Thompson , David Ryan Ormond , Chaitra Badve , Andrew E Sloan , Vachan Vadmal , Kristin Waite , Rivka R Colen , Linmin Pei , Murat Ak , Ashok Srinivasan , J Rajiv Bapuraj , Arvind Rao , Nicholas Wang , Ota Yoshiaki , Toshio Moritani , Sevcan Turk , Joonsang Lee , Snehal Prabhudesai , Fanny Mor√≥n , Jacob Mandel , Konstantinos Kamnitsas , Ben Glocker , Luke V M Dixon , Matthew Williams , Peter Zampakis , Vasileios Panagiotopoulos , Panagiotis Tsiganos , Sotiris Alexiou , Ilias Haliassos , Evangelia I Zacharaki , Konstantinos Moustakas , Christina Kalogeropoulou , Dimitrios M Kardamakis , Yoon Seong Choi , Seung-Koo Lee , Jong Hee Chang , Sung Soo Ahn , Bing Luo , Laila Poisson , Ning Wen , Pallavi Tiwari , Ruchika Verma , Rohan Bareja , Ipsa Yadav , Jonathan Chen , Neeraj Kumar , Marion Smits , Sebastian R van der Voort , Ahmed Alafandi , Fatih Incekara , Maarten MJ Wijnenga , Georgios Kapsas , Renske Gahrmann , Joost W Schouten , Hendrikus J Dubbink , Arnaud JPE Vincent , Martin J van den Bent , Pim J French , Stefan Klein , Yading Yuan , Sonam Sharma , Tzu-Chi Tseng , Saba Adabi , Simone P Niclou , Olivier Keunen , Ann-Christin Hau , Martin Valli√®res , David Fortin , Martin Lepage , Bennett Landman , Karthik Ramadass , Kaiwen Xu , Silky Chotai , Lola B Chambless , Akshitkumar Mistry , Reid C Thompson , Yuriy Gusev , Krithika Bhuvaneshwar , Anousheh Sayah , Camelia Bencheqroun , Anas Belouali , Subha Madhavan , Thomas C Booth , Alysha Chelliah , Marc Modat , Haris Shuaib , Carmen Dragos , Aly Abayazeed , Kenneth Kolodziej , Michael Hill , Ahmed Abbassy , Shady Gamal , Mahmoud Mekhaimar , Mohamed Qayati , Mauricio Reyes , Ji Eun Park , Jihye Yun , Ho Sung Kim , Abhishek Mahajan , Mark Muzi , Sean Benson , Regina G H Beets-Tan , Jonas Teuwen , Alejandro Herrera-Trujillo , Maria Trujillo , William Escobar , Ana Abello , Jose Bernal , Jhon G√≥mez , Joseph Choi , Stephen Baek , Yusung Kim , Heba Ismael , Bryan Allen , John M Buatti , Aikaterini Kotrotsou , Hongwei Li , Tobias Weiss , Michael Weller , Andrea Bink , Bertrand Pouymayou , Hassan F Shaykh , Joel Saltz , Prateek Prasanna , Sampurna Shrestha , Kartik M Mani , David Payne , Tahsin Kurc , Enrique Pelaez , Heydy Franco-Maldonado , Francis Loayza , Sebastian Quevedo , Pamela Guevara , Esteban Torche , Cristobal Mendoza , Franco Vera , Elvis R√≠os , Eduardo L√≥pez , Sergio A Velastin , Godwin Ogbole , Dotun Oyekunle , Olubunmi Odafe-Oyibotha , Babatunde Osobu , Mustapha Shu'aibu , Adeleye Dorcas , Mayowa Soneye , Farouk Dako , Amber L Simpson , Mohammad Hamghalam , Jacob J Peoples , Ricky Hu , Anh Tran , Danielle Cutler , Fabio Y Moraes , Michael A Boss , James Gimpel , Deepak Kattil Veettil , Kendall Schmidt , Brian Bialecki , Sailaja Marella , Cynthia Price , Lisa Cimino , Charles Apgar , Prashant Shah , Bjoern Menze , Jill S Barnholtz-Sloan , Jason Martin , Spyridon Bakas

* federated learning, deep learning, convolutional neural network, segmentation, brain tumor, glioma, glioblastoma, FeTS, BraTS 

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Federated Learning for the Classification of Tumor Infiltrating Lymphocytes



Ujjwal Baid , Sarthak Pati , Tahsin M. Kurc , Rajarsi Gupta , Erich Bremer , Shahira Abousamra , Siddhesh P. Thakur , Joel H. Saltz , Spyridon Bakas


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CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation



Reuben Dorent , Aaron Kujawa , Marina Ivory , Spyridon Bakas , Nicola Rieke , Samuel Joutard , Ben Glocker , Jorge Cardoso , Marc Modat , Kayhan Batmanghelich , Arseniy Belkov , Maria Baldeon Calisto , Jae Won Choi , Benoit M. Dawant , Hexin Dong , Sergio Escalera , Yubo Fan , Lasse Hansen , Mattias P. Heinrich , Smriti Joshi , Victoriya Kashtanova , Hyeon Gyu Kim , Satoshi Kondo , Christian N. Kruse , Susana K. Lai-Yuen , Hao Li , Han Liu , Buntheng Ly , Ipek Oguz , Hyungseob Shin , Boris Shirokikh , Zixian Su , Guotai Wang , Jianghao Wu , Yanwu Xu , Kai Yao , Li Zhang , Sebastien Ourselin , Jonathan Shapey , Tom Vercauteren

* Submitted to Medical Image Analysis 

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QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation -- Analysis of Ranking Metrics and Benchmarking Results



Raghav Mehta , Angelos Filos , Ujjwal Baid , Chiharu Sako , Richard McKinley , Michael Rebsamen , Katrin Dätwyler , Raphael Meier , Piotr Radojewski , Gowtham Krishnan Murugesan , Sahil Nalawade , Chandan Ganesh , Ben Wagner , Fang F. Yu , Baowei Fei , Ananth J. Madhuranthakam , Joseph A. Maldjian , Laura Daza , Catalina Gómez , Pablo Arbeláez , Chengliang Dai , Shuo Wang , Hadrien Raynaud , Yuanhan Mo , Elsa Angelini , Yike Guo , Wenjia Bai , Subhashis Banerjee , Linmin Pei , Murat AK , Sarahi Rosas-González , Illyess Zemmoura , Clovis Tauber , Minh H. Vu , Tufve Nyholm , Tommy Löfstedt , Laura Mora Ballestar , Veronica Vilaplana , Hugh McHugh , Gonzalo Maso Talou , Alan Wang , Jay Patel , Ken Chang , Katharina Hoebel , Mishka Gidwani , Nishanth Arun , Sharut Gupta , Mehak Aggarwal , Praveer Singh , Elizabeth R. Gerstner , Jayashree Kalpathy-Cramer , Nicolas Boutry , Alexis Huard , Lasitha Vidyaratne , Md Monibor Rahman , Khan M. Iftekharuddin , Joseph Chazalon , Elodie Puybareau , Guillaume Tochon , Jun Ma , Mariano Cabezas , Xavier Llado , Arnau Oliver , Liliana Valencia , Sergi Valverde , Mehdi Amian , Mohammadreza Soltaninejad , Andriy Myronenko , Ali Hatamizadeh , Xue Feng , Quan Dou , Nicholas Tustison , Craig Meyer , Nisarg A. Shah , Sanjay Talbar , Marc-Andr Weber , Abhishek Mahajan , Andras Jakab , Roland Wiest , Hassan M. Fathallah-Shaykh , Arash Nazeri , Mikhail Milchenko , Daniel Marcus , Aikaterini Kotrotsou , Rivka Colen , John Freymann , Justin Kirby , Christos Davatzikos , Bjoern Menze , Spyridon Bakas , Yarin Gal , Tal Arbel

* Under submission at MELBA journal 

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The Brain Tumor Sequence Registration Challenge: Establishing Correspondence between Pre-Operative and Follow-up MRI scans of diffuse glioma patients



Bhakti Baheti , Diana Waldmannstetter , Satrajit Chakrabarty , Hamed Akbari , Michel Bilello , Benedikt Wiestler , Julian Schwarting , Evan Calabrese , Jeffrey Rudie , Syed Abidi , Mina Mousa , Javier Villanueva-Meyer , Daniel S. Marcus , Christos Davatzikos , Aristeidis Sotiras , Bjoern Menze , Spyridon Bakas


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The University of California San Francisco Preoperative Diffuse Glioma (UCSF-PDGM) MRI Dataset



Evan Calabrese , Javier Villanueva-Meyer , Jeffrey Rudie , Andreas Rauschecker , Ujjwal Baid , Spyridon Bakas , John Mongan , Christopher Hess , Soonmee Cha

* 6 pages, 1 figure, 2 tables 

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The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification



Ujjwal Baid , Satyam Ghodasara , Michel Bilello , Suyash Mohan , Evan Calabrese , Errol Colak , Keyvan Farahani , Jayashree Kalpathy-Cramer , Felipe C. Kitamura , Sarthak Pati , Luciano M. Prevedello , Jeffrey D. Rudie , Chiharu Sako , Russell T. Shinohara , Timothy Bergquist , Rong Chai , James Eddy , Julia Elliott , Walter Reade , Thomas Schaffter , Thomas Yu , Jiaxin Zheng , BraTS Annotators , Christos Davatzikos , John Mongan , Christopher Hess , Soonmee Cha , Javier Villanueva-Meyer , John B. Freymann , Justin S. Kirby , Benedikt Wiestler , Priscila Crivellaro , Rivka R. Colen , Aikaterini Kotrotsou , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Hassan Fathallah-Shaykh , Roland Wiest , Andras Jakab , Marc-Andre Weber , Abhishek Mahajan , Bjoern Menze , Adam E. Flanders , Spyridon Bakas

* 17 pages, 2 figures, 1 table 

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