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Lena Maier-Hein

Computer Assisted Medical Interventions, Helmholtz Information and Data Science School for Health, Karlsruhe/Heidelberg, Germany, Medical Faculty, Heidelberg University, Heidelberg, Germany, HIP Helmholtz Imaging Platform, German Cancer Research Center, Faculty of Mathematics and Computer Science, Heidelberg University, Germany

Sources of performance variability in deep learning-based polyp detection


Nov 17, 2022
Thuy Nuong Tran, Tim Adler, Amine Yamlahi, Evangelia Christodoulou, Patrick Godau, Annika Reinke, Minu Dietlinde Tizabi, Peter Sauer, Tillmann Persicke, Jörg Gerhard Albert, Lena Maier-Hein

* 12 pages, 9 figures, 3 tables. Submitted to IPCAI 2023 

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MONAI: An open-source framework for deep learning in healthcare


Nov 04, 2022
M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murrey, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Andriy Myronenko, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans Johnson, Brad Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen Aylward, Prerna Dogra, Sebastien Ourselin, Andrew Feng

* www.monai.io 

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Labeling instructions matter in biomedical image analysis


Jul 20, 2022
Tim Rädsch, Annika Reinke, Vivienn Weru, Minu D. Tizabi, Nicholas Schreck, A. Emre Kavur, Bünyamin Pekdemir, Tobias Roß, Annette Kopp-Schneider, Lena Maier-Hein


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Metrics reloaded: Pitfalls and recommendations for image analysis validation


Jun 03, 2022
Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu D. Tizabi, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger

* Shared first authors: Lena Maier-Hein, Annika Reinke. arXiv admin note: substantial text overlap with arXiv:2104.05642 

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Ten years of image analysis and machine learning competitions in dementia


Dec 15, 2021
Esther E. Bron, Stefan Klein, Annika Reinke, Janne M. Papma, Lena Maier-Hein, Daniel C. Alexander, Neil P. Oxtoby

* 12 pages, 4 tables 

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Robust deep learning-based semantic organ segmentation in hyperspectral images


Nov 09, 2021
Silvia Seidlitz, Jan Sellner, Jan Odenthal, Berkin Özdemir, Alexander Studier-Fischer, Samuel Knödler, Leonardo Ayala, Tim Adler, Hannes G. Kenngott, Minu Tizabi, Martin Wagner, Felix Nickel, Beat P. Müller-Stich, Lena Maier-Hein

* The first two authors (Silvia Seidlitz and Jan Sellner) contributed equally to this paper 

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Comparative Validation of Machine Learning Algorithms for Surgical Workflow and Skill Analysis with the HeiChole Benchmark


Sep 30, 2021
Martin Wagner, Beat-Peter Müller-Stich, Anna Kisilenko, Duc Tran, Patrick Heger, Lars Mündermann, David M Lubotsky, Benjamin Müller, Tornike Davitashvili, Manuela Capek, Annika Reinke, Tong Yu, Armine Vardazaryan, Chinedu Innocent Nwoye, Nicolas Padoy, Xinyang Liu, Eung-Joo Lee, Constantin Disch, Hans Meine, Tong Xia, Fucang Jia, Satoshi Kondo, Wolfgang Reiter, Yueming Jin, Yonghao Long, Meirui Jiang, Qi Dou, Pheng Ann Heng, Isabell Twick, Kadir Kirtac, Enes Hosgor, Jon Lindström Bolmgren, Michael Stenzel, Björn von Siemens, Hannes G. Kenngott, Felix Nickel, Moritz von Frankenberg, Franziska Mathis-Ullrich, Lena Maier-Hein, Stefanie Speidel, Sebastian Bodenstedt


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Task Fingerprinting for Meta Learning in Biomedical Image Analysis


Jul 08, 2021
Patrick Godau, Lena Maier-Hein

* Medical Image Computing and Computer Assisted Interventions (MICCAI) 2021 

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How can we learn (more) from challenges? A statistical approach to driving future algorithm development


Jun 17, 2021
Tobias Roß, Pierangela Bruno, Annika Reinke, Manuel Wiesenfarth, Lisa Koeppel, Peter M. Full, Bünyamin Pekdemir, Patrick Godau, Darya Trofimova, Fabian Isensee, Sara Moccia, Francesco Calimeri, Beat P. Müller-Stich, Annette Kopp-Schneider, Lena Maier-Hein


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Machine learning-based analysis of hyperspectral images for automated sepsis diagnosis


Jun 15, 2021
Maximilian Dietrich, Silvia Seidlitz, Nicholas Schreck, Manuel Wiesenfarth, Patrick Godau, Minu Tizabi, Jan Sellner, Sebastian Marx, Samuel Knödler, Michael M. Allers, Leonardo Ayala, Karsten Schmidt, Thorsten Brenner, Alexander Studier-Fischer, Felix Nickel, Beat P. Müller-Stich, Annette Kopp-Schneider, Markus A. Weigand, Lena Maier-Hein

* Maximilian Dietrich and Silvia Seidlitz contributed equally. Markus A. Weigand and Lena Maier-Hein contributed equally 

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