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Video-rate multispectral imaging in laparoscopic surgery: First-in-human application


May 28, 2021
Leonardo Ayala, Sebastian Wirkert, Anant Vemuri, Tim Adler, Silvia Seidlitz, Sebastian Pirmann, Christina Engels, Dogu Teber, Lena Maier-Hein


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Semantic segmentation of multispectral photoacoustic images using deep learning


May 20, 2021
Janek Gröhl, Melanie Schellenberg, Kris Dreher, Niklas Holzwarth, Minu D. Tizabi, Alexander Seitel, Lena Maier-Hein

* 8 pages, 7 figures, 3 tables 

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The Federated Tumor Segmentation (FeTS) Challenge


May 14, 2021
Sarthak Pati, Ujjwal Baid, Maximilian Zenk, Brandon Edwards, Micah Sheller, G. Anthony Reina, Patrick Foley, Alexey Gruzdev, Jason Martin, Shadi Albarqouni, Yong Chen, Russell Taki Shinohara, Annika Reinke, David Zimmerer, John B. Freymann, Justin S. Kirby, Christos Davatzikos, Rivka R. Colen, Aikaterini Kotrotsou, Daniel Marcus, Mikhail Milchenko, Arash Nazeri, Hassan Fathallah-Shaykh, Roland Wiest, Andras Jakab, Marc-Andre Weber, Abhishek Mahajan, Lena Maier-Hein, Jens Kleesiek, Bjoern Menze, Klaus Maier-Hein, Spyridon Bakas


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Common Limitations of Image Processing Metrics: A Picture Story


Apr 13, 2021
Annika Reinke, Matthias Eisenmann, Minu D. Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin Kurc, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus Maier-Hein, Bjoern Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein

* This is a dynamic paper on limitations of commonly used metrics. The current version discusses segmentation metrics only, while future versions will also include metrics for classification and detection. For missing use cases, comments or questions, please contact [email protected] or [email protected]. Substantial contributions to this document will be acknowledged with a co-authorship 

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Data-driven generation of plausible tissue geometries for realistic photoacoustic image synthesis


Mar 29, 2021
Melanie Schellenberg, Janek Gröhl, Kris Dreher, Niklas Holzwarth, Minu D. Tizabi, Alexander Seitel, Lena Maier-Hein

* 13 pages, 7 figures, 5 tables 

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Surgical Visual Domain Adaptation: Results from the MICCAI 2020 SurgVisDom Challenge


Feb 26, 2021
Aneeq Zia, Kiran Bhattacharyya, Xi Liu, Ziheng Wang, Satoshi Kondo, Emanuele Colleoni, Beatrice van Amsterdam, Razeen Hussain, Raabid Hussain, Lena Maier-Hein, Danail Stoyanov, Stefanie Speidel, Anthony Jarc

* Results from SurgVisDom 2020 challenge held at MICCAI 2020 

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Stereo Correspondence and Reconstruction of Endoscopic Data Challenge


Jan 28, 2021
Max Allan, Jonathan Mcleod, Congcong Wang, Jean Claude Rosenthal, Zhenglei Hu, Niklas Gard, Peter Eisert, Ke Xue Fu, Trevor Zeffiro, Wenyao Xia, Zhanshi Zhu, Huoling Luo, Fucang Jia, Xiran Zhang, Xiaohong Li, Lalith Sharan, Tom Kurmann, Sebastian Schmid, Raphael Sznitman, Dimitris Psychogyios, Mahdi Azizian, Danail Stoyanov, Lena Maier-Hein, Stefanie Speidel


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SERV-CT: A disparity dataset from CT for validation of endoscopic 3D reconstruction


Dec 22, 2020
P. J. "Eddie'' Edwards, Dimitris Psychogyios, Stefanie Speidel, Lena Maier-Hein, Danail Stoyanov

* Submitted to Medical Image Analysis. 14 Figures, 17 pages 

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Representing Ambiguity in Registration Problems with Conditional Invertible Neural Networks


Dec 15, 2020
Darya Trofimova, Tim Adler, Lisa Kausch, Lynton Ardizzone, Klaus Maier-Hein, Ulrich Köthe, Carsten Rother, Lena Maier-Hein

* The paper got accepted at Medical Imaging Meets NeurIPS Workshop at Neural Information Processing Systems 2020 

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Tattoo tomography: Freehand 3D photoacoustic image reconstruction with an optical pattern


Nov 11, 2020
Niklas Holzwarth, Melanie Schellenberg, Janek Gröhl, Kris Dreher, Jan-Hinrich Nölke, Alexander Seitel, Minu D. Tizabi, Beat P. Müller-Stich, Lena Maier-Hein

* 12 pages, 5 figures 

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Invertible Neural Networks for Uncertainty Quantification in Photoacoustic Imaging


Nov 10, 2020
Jan-Hinrich Nölke, Tim Adler, Janek Gröhl, Lynton Ardizzone, Carsten Rother, Ullrich Köthe, Lena Maier-Hein

* 7 pages, 4 figures, submitted to "Bildverarbeitung f\"ur die Medizin (BVM) 2021" 

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Deep learning for biomedical photoacoustic imaging: A review


Nov 05, 2020
Janek Gröhl, Melanie Schellenberg, Kris Dreher, Lena Maier-Hein

* 31 pages, 8 figures, 3 tables, 169 references 

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Surgical Data Science -- from Concepts to Clinical Translation


Oct 30, 2020
Lena Maier-Hein, Matthias Eisenmann, Duygu Sarikaya, Keno März, Toby Collins, Anand Malpani, Johannes Fallert, Hubertus Feussner, Stamatia Giannarou, Pietro Mascagni, Hirenkumar Nakawala, Adrian Park, Carla Pugh, Danail Stoyanov, Swaroop S. Vedula, Beat Peter Müller, Kevin Cleary, Gabor Fichtinger, Germain Forestier, Bernard Gibaud, Teodor Grantcharov, Makoto Hashizume, Hannes Kenngott, Ron Kikinis, Lars Mündermann, Nassir Navab, Sinan Onogur, Raphael Sznitman, Russell Taylor, Minu Dietlinde Tizabi, Martin Wagner, Gregory D. Hager, Thomas Neumuth, Nicolas Padoy, Pierre Jannin, Stefanie Speidel


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Heidelberg Colorectal Data Set for Surgical Data Science in the Sensor Operating Room


May 28, 2020
Lena Maier-Hein, Martin Wagner, Tobias Ross, Annika Reinke, Sebastian Bodenstedt, Peter M. Full, Hellena Hempe, Diana Mindroc-Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Anna Kisilenko, Benjamin Müller, Tornike Davitashvili, Manuela Capek, Minu Tizabi, Matthias Eisenmann, Tim J. Adler, Janek Gröhl, Melanie Schellenberg, Silvia Seidlitz, T. Y. Emmy Lai, Veith Roethlingshoefer, Fabian Both, Sebastian Bittel, Marc Mengler, Martin Apitz, Stefanie Speidel, Hannes G. Kenngott, Beat P. Müller-Stich

* Submitted to Nature Scientific Data 

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Robust Medical Instrument Segmentation Challenge 2019


Mar 23, 2020
Tobias Ross, Annika Reinke, Peter M. Full, Martin Wagner, Hannes Kenngott, Martin Apitz, Hellena Hempe, Diana Mindroc Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Pablo Arbeláez, Gui-Bin Bian, Sebastian Bodenstedt, Jon Lindström Bolmgren, Laura Bravo-Sánchez, Hua-Bin Chen, Cristina González, Dong Guo, Pål Halvorsen, Pheng-Ann Heng, Enes Hosgor, Zeng-Guang Hou, Fabian Isensee, Debesh Jha, Tingting Jiang, Yueming Jin, Kadir Kirtac, Sabrina Kletz, Stefan Leger, Zhixuan Li, Klaus H. Maier-Hein, Zhen-Liang Ni, Michael A. Riegler, Klaus Schoeffmann, Ruohua Shi, Stefanie Speidel, Michael Stenzel, Isabell Twick, Gutai Wang, Jiacheng Wang, Liansheng Wang, Lu Wang, Yujie Zhang, Yan-Jie Zhou, Lei Zhu, Manuel Wiesenfarth, Annette Kopp-Schneider, Beat P. Müller-Stich, Lena Maier-Hein

* A pre-print 

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2018 Robotic Scene Segmentation Challenge


Feb 03, 2020
Max Allan, Satoshi Kondo, Sebastian Bodenstedt, Stefan Leger, Rahim Kadkhodamohammadi, Imanol Luengo, Felix Fuentes, Evangello Flouty, Ahmed Mohammed, Marius Pedersen, Avinash Kori, Varghese Alex, Ganapathy Krishnamurthi, David Rauber, Robert Mendel, Christoph Palm, Sophia Bano, Guinther Saibro, Chi-Sheng Shih, Hsun-An Chiang, Juntang Zhuang, Junlin Yang, Vladimir Iglovikov, Anton Dobrenkii, Madhu Reddiboina, Anubhav Reddy, Xingtong Liu, Cong Gao, Mathias Unberath, Myeonghyeon Kim, Chanho Kim, Chaewon Kim, Hyejin Kim, Gyeongmin Lee, Ihsan Ullah, Miguel Luna, Sang Hyun Park, Mahdi Azizian, Danail Stoyanov, Lena Maier-Hein, Stefanie Speidel


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Out of distribution detection for intra-operative functional imaging


Nov 05, 2019
Tim J. Adler, Leonardo Ayala, Lynton Ardizzone, Hannes G. Kenngott, Anant Vemuri, Beat P. Müller-Stich, Carsten Rother, Ullrich Köthe, Lena Maier-Hein

* Proceedings of the First International Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2019, and the 8th International Workshop on Clinical Image-Based Procedures, CLIP 2019 
* The final authenticated version is available online at https://doi.org/10.1007/978-3-030-32689-0_8 

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BIAS: Transparent reporting of biomedical image analysis challenges


Oct 23, 2019
Lena Maier-Hein, Annika Reinke, Michal Kozubek, Anne L. Martel, Tal Arbel, Matthias Eisenmann, Allan Hanbuary, Pierre Jannin, Henning Müller, Sinan Onogur, Julio Saez-Rodriguez, Bram van Ginneken, Annette Kopp-Schneider, Bennett Landman

* 4 Supplements: Suppl 1: Reviewer checklist Suppl 2: Gloassary Suppl 3: Form for summarizing information on challenge organization Suppl 4: Structured description of a challenge design 

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Methods and open-source toolkit for analyzing and visualizing challenge results


Oct 11, 2019
Manuel Wiesenfarth, Annika Reinke, Bennett A. Landman, Manuel Jorge Cardoso, Lena Maier-Hein, Annette Kopp-Schneider


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Generating large labeled data sets for laparoscopic image processing tasks using unpaired image-to-image translation


Jul 05, 2019
Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel

* Accepted at MICCAI 2019 

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Uncertainty-aware performance assessment of optical imaging modalities with invertible neural networks


Mar 08, 2019
Tim J. Adler, Lynton Ardizzone, Anant Vemuri, Leonardo Ayala, Janek Gröhl, Thomas Kirchner, Sebastian Wirkert, Jakob Kruse, Carsten Rother, Ullrich Köthe, Lena Maier-Hein

* Accepted at IPCAI 2019 

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A large annotated medical image dataset for the development and evaluation of segmentation algorithms


Feb 25, 2019
Amber L. Simpson, Michela Antonelli, Spyridon Bakas, Michel Bilello, Keyvan Farahani, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern Menze, Olaf Ronneberger, Ronald M. Summers, Patrick Bilic, Patrick F. Christ, Richard K. G. Do, Marc Gollub, Jennifer Golia-Pernicka, Stephan H. Heckers, William R. Jarnagin, Maureen K. McHugo, Sandy Napel, Eugene Vorontsov, Lena Maier-Hein, M. Jorge Cardoso


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