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A Decoupled Uncertainty Model for MRI Segmentation Quality Estimation


Sep 06, 2021
Richard Shaw, Carole H. Sudre, Sebastien Ourselin, M. Jorge Cardoso, Hugh G. Pemberton

* Accepted for publication at the Journal of Machine Learning for Biomedical Imaging (MELBA) https://melba-journal.org. arXiv admin note: substantial text overlap with arXiv:2001.11927 

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Distinguishing Healthy Ageing from Dementia: a Biomechanical Simulation of Brain Atrophy using Deep Networks


Aug 18, 2021
Mariana Da Silva, Carole H. Sudre, Kara Garcia, Cher Bass, M. Jorge Cardoso, Emma C. Robinson

* MLCN 2021 

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Estimating MRI Image Quality via Image Reconstruction Uncertainty


Jun 21, 2021
Richard Shaw, Carole H. Sudre, Sebastien Ourselin, M. Jorge Cardoso


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Common Limitations of Image Processing Metrics: A Picture Story


Apr 13, 2021
Annika Reinke, Matthias Eisenmann, Minu D. Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin Kurc, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus Maier-Hein, Bjoern Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein

* This is a dynamic paper on limitations of commonly used metrics. The current version discusses segmentation metrics only, while future versions will also include metrics for classification and detection. For missing use cases, comments or questions, please contact [email protected] or [email protected]. Substantial contributions to this document will be acknowledged with a co-authorship 

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Biomechanical modelling of brain atrophy through deep learning


Dec 14, 2020
Mariana da Silva, Kara Garcia, Carole H. Sudre, Cher Bass, M. Jorge Cardoso, Emma Robinson

* Submitted to Medical Imaging Meets NeurIPS 2020 

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Test-time Unsupervised Domain Adaptation


Oct 05, 2020
Thomas Varsavsky, Mauricio Orbes-Arteaga, Carole H. Sudre, Mark S. Graham, Parashkev Nachev, M. Jorge Cardoso

* Accepted at MICCAI 2020 

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Hierarchical brain parcellation with uncertainty


Sep 16, 2020
Mark S. Graham, Carole H. Sudre, Thomas Varsavsky, Petru-Daniel Tudosiu, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

* To be published in the MICCAI 2020 workshop: Uncertainty for Safe Utilization of Machine Learning in Medical Imaging 

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Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets


Sep 08, 2020
Reuben Dorent, Thomas Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Jorge Cardoso, Sebastien Ourselin, Tom Vercauteren

* MIDL 2019 special issue - Medical Image Analysis 

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Neuromorphologicaly-preserving Volumetric data encoding using VQ-VAE


Feb 13, 2020
Petru-Daniel Tudosiu, Thomas Varsavsky, Richard Shaw, Mark Graham, Parashkev Nachev, Sebastien Ourselin, Carole H. Sudre, M. Jorge Cardoso


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A Heteroscedastic Uncertainty Model for Decoupling Sources of MRI Image Quality


Jan 31, 2020
Richard Shaw, Carole H. Sudre, Sebastien Ourselin, M. Jorge Cardoso


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Multi-Domain Adaptation in Brain MRI through Paired Consistency and Adversarial Learning


Sep 17, 2019
Mauricio Orbes-Arteaga, Thomas Varsavsky, Carole H. Sudre, Zach Eaton-Rosen, Lewis J. Haddow, Lauge Sørensen, Mads Nielsen, Akshay Pai, Sébastien Ourselin, Marc Modat, Parashkev Nachev, M. Jorge Cardoso

* Accepted at 1st International Workshop on Domain Adaptation and Representation Transfer held at MICCAI 2019 

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Let's agree to disagree: learning highly debatable multirater labelling


Sep 04, 2019
Carole H. Sudre, Beatriz Gomez Anson, Silvia Ingala, Chris D. Lane, Daniel Jimenez, Lukas Haider, Thomas Varsavsky, Ryutaro Tanno, Lorna Smith, Sébastien Ourselin, Rolf H. Jäger, M. Jorge Cardoso

* Accepted at MICCAI 2019 

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Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge


Apr 01, 2019
Hugo J. Kuijf, J. Matthijs Biesbroek, Jeroen de Bresser, Rutger Heinen, Simon Andermatt, Mariana Bento, Matt Berseth, Mikhail Belyaev, M. Jorge Cardoso, Adrià Casamitjana, D. Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Lladó, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, Sébastien Ourselin, Bo-yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Elodie Puybareau, Leticia Rittner, Carole H. Sudre, Sergi Valverde, Verónica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Christopher Chen, Wiesje van der Flier, Frederik Barkhof, Max A. Viergever, Geert Jan Biessels

* Accepted for publication in IEEE Transactions on Medical Imaging 

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3D multirater RCNN for multimodal multiclass detection and characterisation of extremely small objects


Dec 21, 2018
Carole H. Sudre, Beatriz Gomez Anson, Silvia Ingala, Chris D. Lane, Daniel Jimenez, Lukas Haider, Thomas Varsavsky, Lorna Smith, H. Rolf Jäger, M. Jorge Cardoso


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PIMMS: Permutation Invariant Multi-Modal Segmentation


Jul 17, 2018
Thomas Varsavsky, Zach Eaton-Rosen, Carole H. Sudre, Parashkev Nachev, M. Jorge Cardoso

* Accepted at the 4th Workshop on Deep Learning in Medical Image Analysis held at MICCAI2018 

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