Mamba-driven MRI-to-CT Synthesis for MRI-only Radiotherapy Planning

Radiotherapy workflows for oncological patients increasingly rely on multi-modal medical imaging, commonly involving both Magnetic Resonance Imaging (MRI) and Computed Tomography (CT). MRI-only treatment planning has emerged as an attractive alternative, as it reduces patient exposure to ionizing radiation and avoids errors introduced by inter-modality registration. While nnU-Net-based frameworks are predominantly used for MRI-to-CT synthesis, we explore Mamba-based architectures for this task, aiming to showcase the advantages of state-space modeling for cross-modality translation compared to standard convolutional neural networks. Specifically, we adapt both the U-Mamba and the SegMamba architecture, originally proposed for segmentation, to perform cross-modality image generation. Our 3D Mamba architecture effectively captures complex volumetric features and long-range dependencies, thus allowing accurate CT synthesis while maintaining fast inference times. Experiments were conducted on a subset of SynthRAD2025 dataset, comprising registered single-channel MRI-CT volume pairs across three anatomical regions. Quantitative evaluation is performed via a combination of image similarity metrics computed in Hounsefield Units (HU) and segmentation-based metrics obtained from TotalSegmentator to ensure geometric consistency is preserved. The findings pave the way for the integration of state-space models into radiotherapy workflows.

From Pen to Pixel: Translating Hand-Drawn Plots into Graphical APIs via a Novel Benchmark and Efficient Adapter

As plots play a critical role in modern data visualization and analysis, Plot2API is launched to help non-experts and beginners create their desired plots by directly recommending graphical APIs from reference plot images by neural networks. However, previous works on Plot2API have primarily focused on the recommendation for standard plot images, while overlooking the hand-drawn plot images that are more accessible to non-experts and beginners. To make matters worse, both Plot2API models trained on standard plot images and powerful multi-modal large language models struggle to effectively recommend APIs for hand-drawn plot images due to the domain gap and lack of expertise. To facilitate non-experts and beginners, we introduce a hand-drawn plot dataset named HDpy-13 to improve the performance of graphical API recommendations for hand-drawn plot images. Additionally, to alleviate the considerable strain of parameter growth and computational resource costs arising from multi-domain and multi-language challenges in Plot2API, we propose Plot-Adapter that allows for the training and storage of separate adapters rather than requiring an entire model for each language and domain. In particular, Plot-Adapter incorporates a lightweight CNN block to improve the ability to capture local features and implements projection matrix sharing to reduce the number of fine-tuning parameters further. Experimental results demonstrate both the effectiveness of HDpy-13 and the efficiency of Plot-Adapter.

Why not to use Cosine Similarity between Label Representations

Cosine similarity is often used to measure the similarity of vectors. These vectors might be the representations of neural network models. However, it is not guaranteed that cosine similarity of model representations will tell us anything about model behaviour. In this paper we show that when using a softmax classifier, be it an image classifier or an autoregressive language model, measuring the cosine similarity between label representations (called unembeddings in the paper) does not give any information on the probabilities assigned by the model. Specifically, we prove that for any softmax classifier model, given two label representations, it is possible to make another model which gives the same probabilities for all labels and inputs, but where the cosine similarity between the representations is now either 1 or -1. We give specific examples of models with very high or low cosine simlarity between representations and show how to we can make equivalent models where the cosine similarity is now -1 or 1. This translation ambiguity can be fixed by centering the label representations, however, labels with representations with low cosine similarity can still have high probability for the same inputs. Fixing the length of the representations still does not give a guarantee that high(or low) cosine similarity will give high(or low) probability to the labels for the same inputs. This means that when working with softmax classifiers, cosine similarity values between label representations should not be used to explain model probabilities.

CORA: A Pathology Synthesis Driven Foundation Model for Coronary CT Angiography Analysis and MACE Risk Assessment

Coronary artery disease, the leading cause of cardiovascular mortality worldwide, can be assessed non-invasively by coronary computed tomography angiography (CCTA). Despite progress in automated CCTA analysis using deep learning, clinical translation is constrained by the scarcity of expert-annotated datasets. Furthermore, widely adopted label-free pretraining strategies, such as masked image modeling, are intrinsically biased toward global anatomical statistics, frequently failing to capture the spatially localized pathological features of coronary plaques. Here, we introduce CORA, a 3D vision foundation model for comprehensive cardiovascular risk assessment. CORA learns directly from volumetric CCTA via a pathology-centric, synthesis-driven self-supervised framework. By utilizing an anatomy-guided lesion synthesis engine, the model is explicitly trained to detect simulated vascular abnormalities, biasing representation learning toward clinically relevant disease features rather than dominant background anatomy. We trained CORA on a large-scale cohort of 12,801 unlabeled CCTA volumes and comprehensively evaluated the model across multi-center datasets from nine independent hospitals. Across diagnostic and anatomical tasks, including plaque characterization, stenosis detection, and coronary artery segmentation, CORA consistently outperformed the state-of-the-art 3D vision foundation models, achieving up to a 29\% performance gain. Crucially, by coupling the imaging encoder with a large language model, we extended CORA into a multimodal framework that significantly improved 30-day major adverse cardiac event (MACE) risk stratification. Our results establish CORA as a scalable and extensible foundation for unified anatomical assessment and cardiovascular risk prediction.

MVHOI: Bridge Multi-view Condition to Complex Human-Object Interaction Video Reenactment via 3D Foundation Model

Human-Object Interaction (HOI) video reenactment with realistic motion remains a frontier in expressive digital human creation. Existing approaches primarily handle simple image-plane motion (e.g., in-plane translations), struggling with complex non-planar manipulations like out-of-plane reorientation. In this paper, we propose MVHOI, a two-stage HOI video reenactment framework that bridges multi-view reference conditions and video foundation models via a 3D Foundation Model (3DFM). The 3DFM first produces view-consistent object priors conditioned on implicit motion dynamics across novel viewpoints. A controllable video generation model then synthesizes high-fidelity object texture by incorporating multi-view reference images, ensuring appearance consistency via a reasonable retrieval mechanism. By enabling these two stages to mutually reinforce one another during the inference phase, our framework shows superior performance in generating long-duration HOI videos with intricate object manipulations. Extensive experiments show substantial improvements over prior approaches, especially for HOI with complex 3D object manipulations.

SciVisAgentBench: A Benchmark for Evaluating Scientific Data Analysis and Visualization Agents

Recent advances in large language models (LLMs) have enabled agentic systems that translate natural language intent into executable scientific visualization (SciVis) tasks. Despite rapid progress, the community lacks a principled and reproducible benchmark for evaluating these emerging SciVis agents in realistic, multi-step analysis settings. We present SciVisAgentBench, a comprehensive and extensible benchmark for evaluating scientific data analysis and visualization agents. Our benchmark is grounded in a structured taxonomy spanning four dimensions: application domain, data type, complexity level, and visualization operation. It currently comprises 108 expert-crafted cases covering diverse SciVis scenarios. To enable reliable assessment, we introduce a multimodal outcome-centric evaluation pipeline that combines LLM-based judging with deterministic evaluators, including image-based metrics, code checkers, rule-based verifiers, and case-specific evaluators. We also conduct a validity study with 12 SciVis experts to examine the agreement between human and LLM judges. Using this framework, we evaluate representative SciVis agents and general-purpose coding agents to establish initial baselines and reveal capability gaps. SciVisAgentBench is designed as a living benchmark to support systematic comparison, diagnose failure modes, and drive progress in agentic SciVis. The benchmark is available at https://scivisagentbench.github.io/.

A Systematic Benchmark of GAN Architectures for MRI-to-CT Synthesis

The translation from Magnetic resonance imaging (MRI) to Computed tomography (CT) has been proposed as an effective solution to facilitate MRI-only clinical workflows while limiting exposure to ionizing radiation. Although numerous Generative Adversarial Network (GAN) architectures have been proposed for MRI-to-CT translation, systematic and fair comparisons across heterogeneous models remain limited. We present a comprehensive benchmark of ten GAN architectures evaluated on the SynthRAD2025 dataset across three anatomical districts (abdomen, thorax, head-and-neck). All models were trained under a unified validation protocol with identical preprocessing and optimization settings. Performance was assessed using complementary metrics capturing voxel-wise accuracy, structural fidelity, perceptual quality, and distribution-level realism, alongside an analysis of computational complexity. Supervised Paired models consistently outperformed Unpaired approaches, confirming the importance of voxel-wise supervision. Pix2Pix achieved the most balanced performance across districts while maintaining a favorable quality-to-complexity trade-off. Multi-district training improved structural robustness, whereas intra-district training maximized voxel-wise fidelity. This benchmark provides quantitative and computational guidance for model selection in MRI-only radiotherapy workflows and establishes a reproducible framework for future comparative studies. To ensure the reproducibility of our experiments we make our code public, together with the overall results, at the following link:https://github.com/arco-group/MRI_TO_CT.git

WeEdit: A Dataset, Benchmark and Glyph-Guided Framework for Text-centric Image Editing

Instruction-based image editing aims to modify specific content within existing images according to user-provided instructions while preserving non-target regions. Beyond traditional object- and style-centric manipulation, text-centric image editing focuses on modifying, translating, or rearranging textual elements embedded within images. However, existing leading models often struggle to execute complex text editing precisely, frequently producing blurry or hallucinated characters. We attribute these failures primarily to the lack of specialized training paradigms tailored for text-centric editing, as well as the absence of large-scale datasets and standardized benchmarks necessary for a closed-loop training and evaluation system. To address these limitations, we present WeEdit, a systematic solution encompassing a scalable data construction pipeline, two benchmarks, and a tailored two-stage training strategy. Specifically, we propose a novel HTML-based automatic editing pipeline, which generates 330K training pairs covering diverse editing operations and 15 languages, accompanied by standardized bilingual and multilingual benchmarks for comprehensive evaluation. On the algorithmic side, we employ glyph-guided supervised fine-tuning to inject explicit spatial and content priors, followed by a multi-objective reinforcement learning stage to align generation with instruction adherence, text clarity, and background preservation. Extensive experiments demonstrate that WeEdit outperforms previous open-source models by a clear margin across diverse editing operations.

Rigid Motion Estimation using Accelerated Iterative Coordinate Descent (REACT) for MR Imaging

Purpose: To develop a computationally viable autofocus method for estimating 3D rigid motion in MR imaging. Theory and Methods: The proposed method, REACT, assumes a piecewise-constant motion trajectory and estimates the rigid motion parameters of individual temporal segments by optimizing an image-quality metric. Coordinate descent is adopted to decompose the high-dimensional optimization problem into a series of subproblems, each updating the motion parameters of a single temporal segment. The cost function of each subproblem is assumed to be approximately locally convex under suitable acquisition conditions. Each subproblem is then solved using a derivative-free solver, thereby avoiding an exhaustive grid search. Numerical simulations were conducted to investigate the local convexity assumption. REACT was evaluated for respiratory motion correction on in vivo free-breathing coronary MR angiography datasets acquired using a 3D cones trajectory with image-based navigators (iNAVs). An autofocus nonrigid motion correction method was also evaluated for comparison. Coronary artery sharpness was quantified using unbounded image edge profile acutance (u-IEPA). Results: In numerical simulations, the objective surfaces of the subproblems were approximately locally convex when the current motion estimate was close to the desired solution. In the in vivo study, REACT yielded higher u-IEPA than the conventional iNAV-based translational motion-estimation method for both the left anterior descending artery (LAD) and right coronary artery. REACT also yielded higher u-IEPA for the LAD than the autofocus nonrigid motion correction method. Conclusion: This study demonstrates the feasibility of coordinate descent for autofocus motion correction in MR imaging.

UNet-AF: An alias-free UNet for image restoration

The simplicity and effectiveness of the UNet architecture makes it ubiquitous in image restoration, image segmentation, and diffusion models. They are often assumed to be equivariant to translations, yet they traditionally consist of layers that are known to be prone to aliasing, which hinders their equivariance in practice. To overcome this limitation, we propose a new alias-free UNet designed from a careful selection of state-of-the-art translation-equivariant layers. We evaluate the proposed equivariant architecture against non-equivariant baselines on image restoration tasks and observe competitive performance with a significant increase in measured equivariance. Through extensive ablation studies, we also demonstrate that each change is crucial for its empirical equivariance. Our implementation is available at https://github.com/jscanvic/UNet-AF