SAEVerbalizer: Generating Explanations for Sparse Autoencoder Features via Representation Verbalization

Sparse autoencoders (SAEs) are proposed to extract numerous features from large language model (LLM) representations, yet explaining these features still relies primarily on external observation. This reliance leads to superficial explanations inferred from observed model behavior and computational inefficiency from collecting such behavioral evidence at scale. We introduce SAEVerbalizer, a framework that injects SAE decoder directions into an LLM's representations and fine-tunes the LLM's downstream layers to generate natural-language explanations of the injected features. Once trained, the resulting verbalizer explains SAE features directly from decoder directions, addressing both limitations. Our experiments show that the learned verbalization capability generalizes to unseen features, transfers across separately trained SAE dictionaries, and, with a lightweight adapter, extends to SAE features from different LLMs. Intervention experiments show that injecting multiple directions yields an explanation combining their meanings, while reversing individual directions produces corresponding meaning shifts.

Where Steering Signals Come From: Activation Source Selection in Activation Steering

Activation steering controls language models by adding vectors or features to hidden states at inference time, but the upstream source of these steering signals is often treated as a secondary detail. We study this source choice as activation source selection: the combination of source context and activation readout policy used to collect the hidden states from which a steering signal is built. Holding the downstream intervention fixed, we show across three instruction-tuned models and four steering task families that changing only the source activations substantially changes steering success. We further find that effective steering is not explained simply by whether the desired behavior appears in the source text. Instead, strong signals come from execution-boundary states, where the model is about to produce or continue the target behavior. This pre-/post-realization distinction explains why answer-based sources sometimes work: their useful component aligns with execution-boundary directions rather than target appearance alone. Building on this view, we introduce tail subtraction, which removes shared prompt and continuation semantics from boundary states and yields cleaner, more stable steering signals. Overall, our results suggest that steering depends on representations of what the model is about to do, not merely on what has already appeared.

EurekAgent: Agent Environment Engineering is All You Need For Autonomous Scientific Discovery

LLM-based agents have shown increasing potential in automating scientific discovery. Given an optimizable metric and an execution environment, they can propose, validate, and iterate scientific solutions, and have produced results that outperform human-designed approaches. As model capabilities continue to improve, we argue that the bottleneck for autonomous scientific discovery is shifting from prescribing agent workflows to designing agent environments: the resources, constraints, and interfaces that shape agent behavior. We frame this as environment engineering: building environments that amplify productive behaviors, such as open-ended exploration, systematic artifact management, and inter-agent collaboration, while suppressing harmful behaviors, such as reward hacking and high-friction human oversight. We present EurekAgent, an environment-engineered agent system for metric-driven autonomous scientific discovery. EurekAgent engineers the environment along four dimensions: permissions engineering for bounded agent execution and isolated evaluation; artifact engineering for filesystem and Git-based collaboration; budget engineering for budget-aware exploration; and human-in-the-loop engineering for easy human supervision and intervention. EurekAgent sets new state-of-the-art results on multiple mathematics, kernel engineering, and machine learning tasks, including new state-of-the-art 26-circle packing results discovered with less than $11 in total API cost. We open-source our code and results, and call for environment engineering as a core research direction for developing reliable autonomous research agents.

Guiding LLM Post-training Data Engineering with Model Internals from Sparse Autoencoders

Model internals encode rich information about how a large language model (LLM) processes its training data; however, post-training data engineering largely relies on external signals and ignores rich intrinsic signals lying in model internals. We propose SAERL, a data engineering framework for LLM reinforcement learning (RL). It models three intrinsic data properties: diversity, difficulty, and quality, using model internals extracted with Sparse Autoencoder (SAE), an advanced mechanistic interpretability tool. Each property grounds a concrete data engineering operation: SAE-space clustering with moderate batch mixing for batch diversity control, a difficulty proxy for easy-to-hard curriculum ordering, and a quality probe for data filtering. SAERL improves average accuracy by 3.00% over vanilla GRPO and reaches target accuracy with 20% fewer training steps on Qwen2.5-Math-1.5B, with consistent gains across model scales and RL algorithms. Experiments show that SAE transfers effectively across model families and scales, serving as a lightweight and reusable data engineering tool. These results demonstrate that model internals are a powerful and practical source of signals for post-training data engineering.

RePrompT: Recurrent Prompt Tuning for Integrating Structured EHR Encoders with Large Language Models

Large Language Models (LLMs) have shown strong promise for mining Electronic Health Records (EHRs) by reasoning over longitudinal clinical information to capture context-rich patient trajectories. However, leveraging LLMs for structured EHRs (e.g., standardized diagnosis and medication codes) presents two key challenges. First, translating time-stamped EHR sequences into plain text can obscure both temporal structure and code identities, weakening the ability to capture code co-occurrence and longitudinal regularities. Second, unlike cohort-trained predictive models that learn a shared, task-aligned representation space across patients, LLMs are often applied in a case-isolated inference setting where each patient is processed independently without leveraging population-level patterns. To address these challenges, we introduce RePrompT, a time-aware LLM framework that integrates structured EHR encoders through prompt tuning, without modifying underlying architectures. Specifically, RePrompT recurrently incorporates latent states from prior visits to preserve longitudinal information, and injects population-level information through trainable prompt tokens derived from a cohort-trained, task-aligned EHR encoder. Experiments on MIMIC-III and MIMIC-IV demonstrate that RePrompT consistently outperforms both EHR-based and LLM-based baselines across multiple clinical prediction tasks.

Text-Attributed Knowledge Graph Enrichment with Large Language Models for Medical Concept Representation

In electronic health record (EHR) mining, learning high-quality representations of medical concepts (e.g., standardized diagnosis, medication, and procedure codes) is fundamental for downstream clinical prediction. However, robust concept representation learning is hindered by two key challenges: (i) clinically important cross-type dependencies (e.g., diagnosis-medication and medication-procedure relations) are often missing or incomplete in existing ontology resources, limiting the ability to model complex EHR patterns; and (ii) rich clinical semantics are often missing from structured resources, and even when available as text, are difficult to integrate with KG structure for representation learning. To address these challenges, we present CoMed, an LLM-empowered graph learning framework for medical concept representation. CoMed first builds a global knowledge graph (KG) over medical codes by combining statistically reliable associations mined from EHRs with type-constrained LLM prompting to infer semantic relations. It then utilizes LLMs to enrich the KG into a text-attributed graph by generating node descriptions and edge rationales, providing semantic signals for both concepts and their relationships. Finally, CoMed jointly trains a LoRA-tuned LLaMA text encoder with a heterogeneous GNN, fusing text semantics and graph structure into unified concept embeddings. Extensive experiments on MIMIC-III and MIMIC-IV show that CoMed consistently improves prediction performance and serves as an effective plug-in concept encoder for standard EHR pipelines.

AgentOS: From Application Silos to a Natural Language-Driven Data Ecosystem

The rapid emergence of open-source, locally hosted intelligent agents marks a critical inflection point in human-computer interaction. Systems such as OpenClaw demonstrate that Large Language Model (LLM)-based agents can autonomously operate local computing environments, orchestrate workflows, and integrate external tools. However, within the current paradigm, these agents remain conventional applications running on legacy operating systems originally designed for Graphical User Interfaces (GUIs) or Command Line Interfaces (CLIs). This architectural mismatch leads to fragmented interaction models, poorly structured permission management (often described as "Shadow AI"), and severe context fragmentation. This paper proposes a new paradigm: a Personal Agent Operating System (AgentOS). In AgentOS, traditional GUI desktops are replaced by a Natural User Interface (NUI) centered on a unified natural language or voice portal. The system core becomes an Agent Kernel that interprets user intent, decomposes tasks, and coordinates multiple agents, while traditional applications evolve into modular Skills-as-Modules enabling users to compose software through natural language rules. We argue that realizing AgentOS fundamentally becomes a Knowledge Discovery and Data Mining (KDD) problem. The Agent Kernel must operate as a real-time engine for intent mining and knowledge discovery. Viewed through this lens, the operating system becomes a continuous data mining pipeline involving sequential pattern mining for workflow automation, recommender systems for skill retrieval, and dynamically evolving personal knowledge graphs. These challenges define a new research agenda for the KDD community in building the next generation of intelligent computing systems.

DT-BEHRT: Disease Trajectory-aware Transformer for Interpretable Patient Representation Learning

The growing adoption of electronic health record (EHR) systems has provided unprecedented opportunities for predictive modeling to guide clinical decision making. Structured EHRs contain longitudinal observations of patients across hospital visits, where each visit is represented by a set of medical codes. While sequence-based, graph-based, and graph-enhanced sequence approaches have been developed to capture rich code interactions over time or within the same visits, they often overlook the inherent heterogeneous roles of medical codes arising from distinct clinical characteristics and contexts. To this end, in this study we propose the Disease Trajectory-aware Transformer for EHR (DT-BEHRT), a graph-enhanced sequential architecture that disentangles disease trajectories by explicitly modeling diagnosis-centric interactions within organ systems and capturing asynchronous progression patterns. To further enhance the representation robustness, we design a tailored pre-training methodology that combines trajectory-level code masking with ontology-informed ancestor prediction, promoting semantic alignment across multiple modeling modules. Extensive experiments on multiple benchmark datasets demonstrate that DT-BEHRT achieves strong predictive performance and provides interpretable patient representations that align with clinicians' disease-centered reasoning. The source code is publicly accessible at https://github.com/GatorAIM/DT-BEHRT.git.

City Editing: Hierarchical Agentic Execution for Dependency-Aware Urban Geospatial Modification

As cities evolve over time, challenges such as traffic congestion and functional imbalance increasingly necessitate urban renewal through efficient modification of existing plans, rather than complete re-planning. In practice, even minor urban changes require substantial manual effort to redraw geospatial layouts, slowing the iterative planning and decision-making procedure. Motivated by recent advances in agentic systems and multimodal reasoning, we formulate urban renewal as a machine-executable task that iteratively modifies existing urban plans represented in structured geospatial formats. More specifically, we represent urban layouts using GeoJSON and decompose natural-language editing instructions into hierarchical geometric intents spanning polygon-, line-, and point-level operations. To coordinate interdependent edits across spatial elements and abstraction levels, we propose a hierarchical agentic framework that jointly performs multi-level planning and execution with explicit propagation of intermediate spatial constraints. We further introduce an iterative execution-validation mechanism that mitigates error accumulation and enforces global spatial consistency during multi-step editing. Extensive experiments across diverse urban editing scenarios demonstrate significant improvements in efficiency, robustness, correctness, and spatial validity over existing baselines.

Robust and Efficient Tool Orchestration via Layered Execution Structures with Reflective Correction

Tool invocation is a core capability of agentic systems, yet failures often arise not from individual tool calls but from how multiple tools are organized and executed together. Existing approaches tightly couple tool execution with stepwise language reasoning or explicit planning, leading to brittle behavior and high execution overhead. To overcome these limitations, we revisit tool invocation from the perspective of tool orchestration. Our key insight is that effective orchestration does not require precise dependency graphs or fine-grained planning. Instead, a coarse-grained layer structure suffices to provide global guidance, while execution-time errors can be corrected locally. Specifically, we model tool orchestration as learning a layered execution structure that captures high-level tool dependencies, inducing layer-wise execution through context constraints. To handle execution-time failures, we introduce a schema-aware reflective correction mechanism that detects and repairs errors locally. This design confines errors to individual tool calls and avoids re-planning entire execution trajectories. This structured execution paradigm enables a lightweight and reusable orchestration component for agentic systems. Experimental results show that our approach achieves robust tool execution while reducing execution complexity and overhead. Code will be made publicly available.