Biological Pathway Guided Gene Selection Through Collaborative Reinforcement Learning

Gene selection in high-dimensional genomic data is essential for understanding disease mechanisms and improving therapeutic outcomes. Traditional feature selection methods effectively identify predictive genes but often ignore complex biological pathways and regulatory networks, leading to unstable and biologically irrelevant signatures. Prior approaches, such as Lasso-based methods and statistical filtering, either focus solely on individual gene-outcome associations or fail to capture pathway-level interactions, presenting a key challenge: how to integrate biological pathway knowledge while maintaining statistical rigor in gene selection? To address this gap, we propose a novel two-stage framework that integrates statistical selection with biological pathway knowledge using multi-agent reinforcement learning (MARL). First, we introduce a pathway-guided pre-filtering strategy that leverages multiple statistical methods alongside KEGG pathway information for initial dimensionality reduction. Next, for refined selection, we model genes as collaborative agents in a MARL framework, where each agent optimizes both predictive power and biological relevance. Our framework incorporates pathway knowledge through Graph Neural Network-based state representations, a reward mechanism combining prediction performance with gene centrality and pathway coverage, and collaborative learning strategies using shared memory and a centralized critic component. Extensive experiments on multiple gene expression datasets demonstrate that our approach significantly improves both prediction accuracy and biological interpretability compared to traditional methods.

Continuous Optimization for Feature Selection with Permutation-Invariant Embedding and Policy-Guided Search

Feature selection removes redundant features to enhanc performance and computational efficiency in downstream tasks. Existing works often struggle to capture complex feature interactions and adapt to diverse scenarios. Recent advances in this domain have incorporated generative intelligence to address these drawbacks by uncovering intricate relationships between features. However, two key limitations remain: 1) embedding feature subsets in a continuous space is challenging due to permutation sensitivity, as changes in feature order can introduce biases and weaken the embedding learning process; 2) gradient-based search in the embedding space assumes convexity, which is rarely guaranteed, leading to reduced search effectiveness and suboptimal subsets. To address these limitations, we propose a new framework that can: 1) preserve feature subset knowledge in a continuous embedding space while ensuring permutation invariance; 2) effectively explore the embedding space without relying on strong convex assumptions. For the first objective, we develop an encoder-decoder paradigm to preserve feature selection knowledge into a continuous embedding space. This paradigm captures feature interactions through pairwise relationships within the subset, removing the influence of feature order on the embedding. Moreover, an inducing point mechanism is introduced to accelerate pairwise relationship computations. For the second objective, we employ a policy-based reinforcement learning (RL) approach to guide the exploration of the embedding space. The RL agent effectively navigates the space by balancing multiple objectives. By prioritizing high-potential regions adaptively and eliminating the reliance on convexity assumptions, the RL agent effectively reduces the risk of converging to local optima. Extensive experiments demonstrate the effectiveness, efficiency, robustness and explicitness of our model.

Collaborative Multi-Agent Reinforcement Learning for Automated Feature Transformation with Graph-Driven Path Optimization

Feature transformation methods aim to find an optimal mathematical feature-feature crossing process that generates high-value features and improves the performance of downstream machine learning tasks. Existing frameworks, though designed to mitigate manual costs, often treat feature transformations as isolated operations, ignoring dynamic dependencies between transformation steps. To address the limitations, we propose TCTO, a collaborative multi-agent reinforcement learning framework that automates feature engineering through graph-driven path optimization. The framework's core innovation lies in an evolving interaction graph that models features as nodes and transformations as edges. Through graph pruning and backtracking, it dynamically eliminates low-impact edges, reduces redundant operations, and enhances exploration stability. This graph also provides full traceability to empower TCTO to reuse high-utility subgraphs from historical transformations. To demonstrate the efficacy and adaptability of our approach, we conduct comprehensive experiments and case studies, which show superior performance across a range of datasets.

Generative AI in Transportation Planning: A Survey

The integration of generative artificial intelligence (GenAI) into transportation planning has the potential to revolutionize tasks such as demand forecasting, infrastructure design, policy evaluation, and traffic simulation. However, there is a critical need for a systematic framework to guide the adoption of GenAI in this interdisciplinary domain. In this survey, we, a multidisciplinary team of researchers spanning computer science and transportation engineering, present the first comprehensive framework for leveraging GenAI in transportation planning. Specifically, we introduce a new taxonomy that categorizes existing applications and methodologies into two perspectives: transportation planning tasks and computational techniques. From the transportation planning perspective, we examine the role of GenAI in automating descriptive, predictive, generative, simulation, and explainable tasks to enhance mobility systems. From the computational perspective, we detail advancements in data preparation, domain-specific fine-tuning, and inference strategies, such as retrieval-augmented generation and zero-shot learning tailored to transportation applications. Additionally, we address critical challenges, including data scarcity, explainability, bias mitigation, and the development of domain-specific evaluation frameworks that align with transportation goals like sustainability, equity, and system efficiency. This survey aims to bridge the gap between traditional transportation planning methodologies and modern AI techniques, fostering collaboration and innovation. By addressing these challenges and opportunities, we seek to inspire future research that ensures ethical, equitable, and impactful use of generative AI in transportation planning.

A Survey on Data-Centric AI: Tabular Learning from Reinforcement Learning and Generative AI Perspective

Tabular data is one of the most widely used data formats across various domains such as bioinformatics, healthcare, and marketing. As artificial intelligence moves towards a data-centric perspective, improving data quality is essential for enhancing model performance in tabular data-driven applications. This survey focuses on data-driven tabular data optimization, specifically exploring reinforcement learning (RL) and generative approaches for feature selection and feature generation as fundamental techniques for refining data spaces. Feature selection aims to identify and retain the most informative attributes, while feature generation constructs new features to better capture complex data patterns. We systematically review existing generative methods for tabular data engineering, analyzing their latest advancements, real-world applications, and respective strengths and limitations. This survey emphasizes how RL-based and generative techniques contribute to the automation and intelligence of feature engineering. Finally, we summarize the existing challenges and discuss future research directions, aiming to provide insights that drive continued innovation in this field.

LEKA:LLM-Enhanced Knowledge Augmentation

Humans excel in analogical learning and knowledge transfer and, more importantly, possess a unique understanding of identifying appropriate sources of knowledge. From a model's perspective, this presents an interesting challenge. If models could autonomously retrieve knowledge useful for transfer or decision-making to solve problems, they would transition from passively acquiring to actively accessing and learning from knowledge. However, filling models with knowledge is relatively straightforward -- it simply requires more training and accessible knowledge bases. The more complex task is teaching models about which knowledge can be analogized and transferred. Therefore, we design a knowledge augmentation method LEKA for knowledge transfer that actively searches for suitable knowledge sources that can enrich the target domain's knowledge. This LEKA method extracts key information from textual information from the target domain, retrieves pertinent data from external data libraries, and harmonizes retrieved data with the target domain data in feature space and marginal probability measures. We validate the effectiveness of our approach through extensive experiments across various domains and demonstrate significant improvements over traditional methods in reducing computational costs, automating data alignment, and optimizing transfer learning outcomes.

Iterative Feature Space Optimization through Incremental Adaptive Evaluation

Iterative feature space optimization involves systematically evaluating and adjusting the feature space to improve downstream task performance. However, existing works suffer from three key limitations:1) overlooking differences among data samples leads to evaluation bias; 2) tailoring feature spaces to specific machine learning models results in overfitting and poor generalization; 3) requiring the evaluator to be retrained from scratch during each optimization iteration significantly reduces the overall efficiency of the optimization process. To bridge these gaps, we propose a gEneralized Adaptive feature Space Evaluator (EASE) to efficiently produce optimal and generalized feature spaces. This framework consists of two key components: Feature-Sample Subspace Generator and Contextual Attention Evaluator. The first component aims to decouple the information distribution within the feature space to mitigate evaluation bias. To achieve this, we first identify features most relevant to prediction tasks and samples most challenging for evaluation based on feedback from the subsequent evaluator. This decoupling strategy makes the evaluator consistently target the most challenging aspects of the feature space. The second component intends to incrementally capture evolving patterns of the feature space for efficient evaluation. We propose a weighted-sharing multi-head attention mechanism to encode key characteristics of the feature space into an embedding vector for evaluation. Moreover, the evaluator is updated incrementally, retaining prior evaluation knowledge while incorporating new insights, as consecutive feature spaces during the optimization process share partial information. Extensive experiments on fourteen real-world datasets demonstrate the effectiveness of the proposed framework. Our code and data are publicly available.

Towards Data-Centric AI: A Comprehensive Survey of Traditional, Reinforcement, and Generative Approaches for Tabular Data Transformation

Tabular data is one of the most widely used formats across industries, driving critical applications in areas such as finance, healthcare, and marketing. In the era of data-centric AI, improving data quality and representation has become essential for enhancing model performance, particularly in applications centered around tabular data. This survey examines the key aspects of tabular data-centric AI, emphasizing feature selection and feature generation as essential techniques for data space refinement. We provide a systematic review of feature selection methods, which identify and retain the most relevant data attributes, and feature generation approaches, which create new features to simplify the capture of complex data patterns. This survey offers a comprehensive overview of current methodologies through an analysis of recent advancements, practical applications, and the strengths and limitations of these techniques. Finally, we outline open challenges and suggest future perspectives to inspire continued innovation in this field.

CONDEN-FI: Consistency and Diversity Learning-based Multi-View Unsupervised Feature and In-stance Co-Selection

The objective of multi-view unsupervised feature and instance co-selection is to simultaneously iden-tify the most representative features and samples from multi-view unlabeled data, which aids in mit-igating the curse of dimensionality and reducing instance size to improve the performance of down-stream tasks. However, existing methods treat feature selection and instance selection as two separate processes, failing to leverage the potential interactions between the feature and instance spaces. Addi-tionally, previous co-selection methods for multi-view data require concatenating different views, which overlooks the consistent information among them. In this paper, we propose a CONsistency and DivErsity learNing-based multi-view unsupervised Feature and Instance co-selection (CONDEN-FI) to address the above-mentioned issues. Specifically, CONDEN-FI reconstructs mul-ti-view data from both the sample and feature spaces to learn representations that are consistent across views and specific to each view, enabling the simultaneous selection of the most important features and instances. Moreover, CONDEN-FI adaptively learns a view-consensus similarity graph to help select both dissimilar and similar samples in the reconstructed data space, leading to a more diverse selection of instances. An efficient algorithm is developed to solve the resultant optimization problem, and the comprehensive experimental results on real-world datasets demonstrate that CONDEN-FI is effective compared to state-of-the-art methods.

GUME: Graphs and User Modalities Enhancement for Long-Tail Multimodal Recommendation

Multimodal recommendation systems (MMRS) have received considerable attention from the research community due to their ability to jointly utilize information from user behavior and product images and text. Previous research has two main issues. First, many long-tail items in recommendation systems have limited interaction data, making it difficult to learn comprehensive and informative representations. However, past MMRS studies have overlooked this issue. Secondly, users' modality preferences are crucial to their behavior. However, previous research has primarily focused on learning item modality representations, while user modality representations have remained relatively simplistic.To address these challenges, we propose a novel Graphs and User Modalities Enhancement (GUME) for long-tail multimodal recommendation. Specifically, we first enhance the user-item graph using multimodal similarity between items. This improves the connectivity of long-tail items and helps them learn high-quality representations through graph propagation. Then, we construct two types of user modalities: explicit interaction features and extended interest features. By using the user modality enhancement strategy to maximize mutual information between these two features, we improve the generalization ability of user modality representations. Additionally, we design an alignment strategy for modality data to remove noise from both internal and external perspectives. Extensive experiments on four publicly available datasets demonstrate the effectiveness of our approach.