Learning from Negative User Feedback and Measuring Responsiveness for Sequential Recommenders

Sequential recommenders have been widely used in industry due to their strength in modeling user preferences. While these models excel at learning a user's positive interests, less attention has been paid to learning from negative user feedback. Negative user feedback is an important lever of user control, and comes with an expectation that recommenders should respond quickly and reduce similar recommendations to the user. However, negative feedback signals are often ignored in the training objective of sequential retrieval models, which primarily aim at predicting positive user interactions. In this work, we incorporate explicit and implicit negative user feedback into the training objective of sequential recommenders in the retrieval stage using a "not-to-recommend" loss function that optimizes for the log-likelihood of not recommending items with negative feedback. We demonstrate the effectiveness of this approach using live experiments on a large-scale industrial recommender system. Furthermore, we address a challenge in measuring recommender responsiveness to negative feedback by developing a counterfactual simulation framework to compare recommender responses between different user actions, showing improved responsiveness from the modeling change.

Quantized Low-Rank Multivariate Regression with Random Dithering

Low-rank multivariate regression (LRMR) is an important statistical learning model that combines highly correlated tasks as a multiresponse regression problem with low-rank priori on the coefficient matrix. In this paper, we study quantized LRMR, a practical setting where the responses and/or the covariates are discretized to finite precision. We focus on the estimation of the underlying coefficient matrix. To make consistent estimator that could achieve arbitrarily small error possible, we employ uniform quantization with random dithering, i.e., we add appropriate random noise to the data before quantization. Specifically, uniform dither and triangular dither are used for responses and covariates, respectively. Based on the quantized data, we propose the constrained Lasso and regularized Lasso estimators, and derive the non-asymptotic error bounds. With the aid of dithering, the estimators achieve minimax optimal rate, while quantization only slightly worsens the multiplicative factor in the error rate. Moreover, we extend our results to a low-rank regression model with matrix responses. We corroborate and demonstrate our theoretical results via simulations on synthetic data or image restoration.

Attentive Clustering Processes

Amortized approaches to clustering have recently received renewed attention thanks to novel objective functions that exploit the expressiveness of deep learning models. In this work we revisit a recent proposal for fast amortized probabilistic clustering, the Clusterwise Clustering Process (CCP), which yields samples from the posterior distribution of cluster labels for sets of arbitrary size using only O(K) forward network evaluations, where K is an arbitrary number of clusters. While adequate in simple datasets, we show that the model can severely underfit complex datasets, and hypothesize that this limitation can be traced back to the implicit assumption that the probability of a point joining a cluster is equally sensitive to all the points available to join the same cluster. We propose an improved model, the Attentive Clustering Process (ACP), that selectively pays more attention to relevant points while preserving the invariance properties of the generative model. We illustrate the advantages of the new model in applications to spike-sorting in multi-electrode arrays and community discovery in networks. The latter case combines the ACP model with graph convolutional networks, and to our knowledge is the first deep learning model that handles an arbitrary number of communities.

Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations

Proteins are the major building blocks of life, and actuators of almost all chemical and biophysical events in living organisms. Their native structures in turn enable their biological functions which have a fundamental role in drug design. This motivates predicting the structure of a protein from its sequence of amino acids, a fundamental problem in computational biology. In this work, we demonstrate state-of-the-art protein structure prediction (PSP) results using embeddings and deep learning models for prediction of backbone atom distance matrices and torsion angles. We recover 3D coordinates of backbone atoms and reconstruct full atom protein by optimization. We create a new gold standard dataset of proteins which is comprehensive and easy to use. Our dataset consists of amino acid sequences, Q8 secondary structures, position specific scoring matrices, multiple sequence alignment co-evolutionary features, backbone atom distance matrices, torsion angles, and 3D coordinates. We evaluate the quality of our structure prediction by RMSD on the latest Critical Assessment of Techniques for Protein Structure Prediction (CASP) test data and demonstrate competitive results with the winning teams and AlphaFold in CASP13 and supersede the results of the winning teams in CASP12. We make our data, models, and code publicly available.

High Quality Prediction of Protein Q8 Secondary Structure by Diverse Neural Network Architectures

We tackle the problem of protein secondary structure prediction using a common task framework. This lead to the introduction of multiple ideas for neural architectures based on state of the art building blocks, used in this task for the first time. We take a principled machine learning approach, which provides genuine, unbiased performance measures, correcting longstanding errors in the application domain. We focus on the Q8 resolution of secondary structure, an active area for continuously improving methods. We use an ensemble of strong predictors to achieve accuracy of 70.7% (on the CB513 test set using the CB6133filtered training set). These results are statistically indistinguishable from those of the top existing predictors. In the spirit of reproducible research we make our data, models and code available, aiming to set a gold standard for purity of training and testing sets. Such good practices lower entry barriers to this domain and facilitate reproducible, extendable research.