High-performance Data Management for Whole Slide Image Analysis in Digital Pathology

When dealing with giga-pixel digital pathology in whole-slide imaging, a notable proportion of data records holds relevance during each analysis operation. For instance, when deploying an image analysis algorithm on whole-slide images (WSI), the computational bottleneck often lies in the input-output (I/O) system. This is particularly notable as patch-level processing introduces a considerable I/O load onto the computer system. However, this data management process could be further paralleled, given the typical independence of patch-level image processes across different patches. This paper details our endeavors in tackling this data access challenge by implementing the Adaptable IO System version 2 (ADIOS2). Our focus has been constructing and releasing a digital pathology-centric pipeline using ADIOS2, which facilitates streamlined data management across WSIs. Additionally, we've developed strategies aimed at curtailing data retrieval times. The performance evaluation encompasses two key scenarios: (1) a pure CPU-based image analysis scenario ("CPU scenario"), and (2) a GPU-based deep learning framework scenario ("GPU scenario"). Our findings reveal noteworthy outcomes. Under the CPU scenario, ADIOS2 showcases an impressive two-fold speed-up compared to the brute-force approach. In the GPU scenario, its performance stands on par with the cutting-edge GPU I/O acceleration framework, NVIDIA Magnum IO GPU Direct Storage (GDS). From what we know, this appears to be among the initial instances, if any, of utilizing ADIOS2 within the field of digital pathology. The source code has been made publicly available at https://github.com/hrlblab/adios.

Temporal Sentence Grounding in Streaming Videos

This paper aims to tackle a novel task - Temporal Sentence Grounding in Streaming Videos (TSGSV). The goal of TSGSV is to evaluate the relevance between a video stream and a given sentence query. Unlike regular videos, streaming videos are acquired continuously from a particular source, and are always desired to be processed on-the-fly in many applications such as surveillance and live-stream analysis. Thus, TSGSV is challenging since it requires the model to infer without future frames and process long historical frames effectively, which is untouched in the early methods. To specifically address the above challenges, we propose two novel methods: (1) a TwinNet structure that enables the model to learn about upcoming events; and (2) a language-guided feature compressor that eliminates redundant visual frames and reinforces the frames that are relevant to the query. We conduct extensive experiments using ActivityNet Captions, TACoS, and MAD datasets. The results demonstrate the superiority of our proposed methods. A systematic ablation study also confirms their effectiveness.

SSTFormer: Bridging Spiking Neural Network and Memory Support Transformer for Frame-Event based Recognition

Event camera-based pattern recognition is a newly arising research topic in recent years. Current researchers usually transform the event streams into images, graphs, or voxels, and adopt deep neural networks for event-based classification. Although good performance can be achieved on simple event recognition datasets, however, their results may be still limited due to the following two issues. Firstly, they adopt spatial sparse event streams for recognition only, which may fail to capture the color and detailed texture information well. Secondly, they adopt either Spiking Neural Networks (SNN) for energy-efficient recognition with suboptimal results, or Artificial Neural Networks (ANN) for energy-intensive, high-performance recognition. However, seldom of them consider achieving a balance between these two aspects. In this paper, we formally propose to recognize patterns by fusing RGB frames and event streams simultaneously and propose a new RGB frame-event recognition framework to address the aforementioned issues. The proposed method contains four main modules, i.e., memory support Transformer network for RGB frame encoding, spiking neural network for raw event stream encoding, multi-modal bottleneck fusion module for RGB-Event feature aggregation, and prediction head. Due to the scarce of RGB-Event based classification dataset, we also propose a large-scale PokerEvent dataset which contains 114 classes, and 27102 frame-event pairs recorded using a DVS346 event camera. Extensive experiments on two RGB-Event based classification datasets fully validated the effectiveness of our proposed framework. We hope this work will boost the development of pattern recognition by fusing RGB frames and event streams. Both our dataset and source code of this work will be released at https://github.com/Event-AHU/SSTFormer.

Generative Query Reformulation for Effective Adhoc Search

Performing automatic reformulations of a user's query is a popular paradigm used in information retrieval (IR) for improving effectiveness -- as exemplified by the pseudo-relevance feedback approaches, which expand the query in order to alleviate the vocabulary mismatch problem. Recent advancements in generative language models have demonstrated their ability in generating responses that are relevant to a given prompt. In light of this success, we seek to study the capacity of such models to perform query reformulation and how they compare with long-standing query reformulation methods that use pseudo-relevance feedback. In particular, we investigate two representative query reformulation frameworks, GenQR and GenPRF. GenQR directly reformulates the user's input query, while GenPRF provides additional context for the query by making use of pseudo-relevance feedback information. For each reformulation method, we leverage different techniques, including fine-tuning and direct prompting, to harness the knowledge of language models. The reformulated queries produced by the generative models are demonstrated to markedly benefit the effectiveness of a state-of-the-art retrieval pipeline on four TREC test collections (varying from TREC 2004 Robust to the TREC 2019 Deep Learning). Furthermore, our results indicate that our studied generative models can outperform various statistical query expansion approaches while remaining comparable to other existing complex neural query reformulation models, with the added benefit of being simpler to implement.

DSRM: Boost Textual Adversarial Training with Distribution Shift Risk Minimization

Adversarial training is one of the best-performing methods in improving the robustness of deep language models. However, robust models come at the cost of high time consumption, as they require multi-step gradient ascents or word substitutions to obtain adversarial samples. In addition, these generated samples are deficient in grammatical quality and semantic consistency, which impairs the effectiveness of adversarial training. To address these problems, we introduce a novel, effective procedure for instead adversarial training with only clean data. Our procedure, distribution shift risk minimization (DSRM), estimates the adversarial loss by perturbing the input data's probability distribution rather than their embeddings. This formulation results in a robust model that minimizes the expected global loss under adversarial attacks. Our approach requires zero adversarial samples for training and reduces time consumption by up to 70\% compared to current best-performing adversarial training methods. Experiments demonstrate that DSRM considerably improves BERT's resistance to textual adversarial attacks and achieves state-of-the-art robust accuracy on various benchmarks.

Finding the Missing-half: Graph Complementary Learning for Homophily-prone and Heterophily-prone Graphs

Real-world graphs generally have only one kind of tendency in their connections. These connections are either homophily-prone or heterophily-prone. While graphs with homophily-prone edges tend to connect nodes with the same class (i.e., intra-class nodes), heterophily-prone edges tend to build relationships between nodes with different classes (i.e., inter-class nodes). Existing GNNs only take the original graph during training. The problem with this approach is that it forgets to take into consideration the ``missing-half" structural information, that is, heterophily-prone topology for homophily-prone graphs and homophily-prone topology for heterophily-prone graphs. In our paper, we introduce Graph cOmplementAry Learning, namely GOAL, which consists of two components: graph complementation and complemented graph convolution. The first component finds the missing-half structural information for a given graph to complement it. The complemented graph has two sets of graphs including both homophily- and heterophily-prone topology. In the latter component, to handle complemented graphs, we design a new graph convolution from the perspective of optimisation. The experiment results show that GOAL consistently outperforms all baselines in eight real-world datasets.

Point-Voxel Absorbing Graph Representation Learning for Event Stream based Recognition

Considering the balance of performance and efficiency, sampled point and voxel methods are usually employed to down-sample dense events into sparse ones. After that, one popular way is to leverage a graph model which treats the sparse points/voxels as nodes and adopts graph neural networks (GNNs) to learn the representation for event data. Although good performance can be obtained, however, their results are still limited mainly due to two issues. (1) Existing event GNNs generally adopt the additional max (or mean) pooling layer to summarize all node embeddings into a single graph-level representation for the whole event data representation. However, this approach fails to capture the importance of graph nodes and also fails to be fully aware of the node representations. (2) Existing methods generally employ either a sparse point or voxel graph representation model which thus lacks consideration of the complementary between these two types of representation models. To address these issues, in this paper, we propose a novel dual point-voxel absorbing graph representation learning for event stream data representation. To be specific, given the input event stream, we first transform it into the sparse event cloud and voxel grids and build dual absorbing graph models for them respectively. Then, we design a novel absorbing graph convolutional network (AGCN) for our dual absorbing graph representation and learning. The key aspect of the proposed AGCN is its ability to effectively capture the importance of nodes and thus be fully aware of node representations in summarizing all node representations through the introduced absorbing nodes. Finally, the event representations of dual learning branches are concatenated together to extract the complementary information of two cues. The output is then fed into a linear layer for event data classification.

Integrated Photonic Encoder for Terapixel Image Processing

Modern lens designs are capable of resolving >10 gigapixels, while advances in camera frame-rate and hyperspectral imaging have made Terapixel/s data acquisition a real possibility. The main bottlenecks preventing such high data-rate systems are power consumption and data storage. In this work, we show that analog photonic encoders could address this challenge, enabling high-speed image compression using orders-of-magnitude lower power than digital electronics. Our approach relies on a silicon-photonics front-end to compress raw image data, foregoing energy-intensive image conditioning and reducing data storage requirements. The compression scheme uses a passive disordered photonic structure to perform kernel-type random projections of the raw image data with minimal power consumption and low latency. A back-end neural network can then reconstruct the original images with structural similarity exceeding 90%. This scheme has the potential to process Terapixel/s data streams using less than 100 fJ/pixel, providing a path to ultra-high-resolution data and image acquisition systems.

AMatFormer: Efficient Feature Matching via Anchor Matching Transformer

Learning based feature matching methods have been commonly studied in recent years. The core issue for learning feature matching is to how to learn (1) discriminative representations for feature points (or regions) within each intra-image and (2) consensus representations for feature points across inter-images. Recently, self- and cross-attention models have been exploited to address this issue. However, in many scenes, features are coming with large-scale, redundant and outliers contaminated. Previous self-/cross-attention models generally conduct message passing on all primal features which thus lead to redundant learning and high computational cost. To mitigate limitations, inspired by recent seed matching methods, in this paper, we propose a novel efficient Anchor Matching Transformer (AMatFormer) for the feature matching problem. AMatFormer has two main aspects: First, it mainly conducts self-/cross-attention on some anchor features and leverages these anchor features as message bottleneck to learn the representations for all primal features. Thus, it can be implemented efficiently and compactly. Second, AMatFormer adopts a shared FFN module to further embed the features of two images into the common domain and thus learn the consensus feature representations for the matching problem. Experiments on several benchmarks demonstrate the effectiveness and efficiency of the proposed AMatFormer matching approach.

PaLI-X: On Scaling up a Multilingual Vision and Language Model

We present the training recipe and results of scaling up PaLI-X, a multilingual vision and language model, both in terms of size of the components and the breadth of its training task mixture. Our model achieves new levels of performance on a wide-range of varied and complex tasks, including multiple image-based captioning and question-answering tasks, image-based document understanding and few-shot (in-context) learning, as well as object detection, video question answering, and video captioning. PaLI-X advances the state-of-the-art on most vision-and-language benchmarks considered (25+ of them). Finally, we observe emerging capabilities, such as complex counting and multilingual object detection, tasks that are not explicitly in the training mix.