Automated Detection and Forecasting of COVID-19 using Deep Learning Techniques: A Review

Coronavirus, or COVID-19, is a hazardous disease that has endangered the health of many people around the world by directly affecting the lungs. COVID-19 is a medium-sized, coated virus with a single-stranded RNA. This virus has one of the largest RNA genomes and is approximately 120 nm. The X-Ray and computed tomography (CT) imaging modalities are widely used to obtain a fast and accurate medical diagnosis. Identifying COVID-19 from these medical images is extremely challenging as it is time-consuming, demanding, and prone to human errors. Hence, artificial intelligence (AI) methodologies can be used to obtain consistent high performance. Among the AI methodologies, deep learning (DL) networks have gained much popularity compared to traditional machine learning (ML) methods. Unlike ML techniques, all stages of feature extraction, feature selection, and classification are accomplished automatically in DL models. In this paper, a complete survey of studies on the application of DL techniques for COVID-19 diagnostic and automated segmentation of lungs is discussed, concentrating on works that used X-Ray and CT images. Additionally, a review of papers on the forecasting of coronavirus prevalence in different parts of the world with DL techniques is presented. Lastly, the challenges faced in the automated detection of COVID-19 using DL techniques and directions for future research are discussed.

SegaBERT: Pre-training of Segment-aware BERT for Language Understanding

Pre-trained language models have achieved state-of-the-art results in various natural language processing tasks. Most of them are based on the Transformer architecture, which distinguishes tokens with the token position index of the input sequence. However, sentence index and paragraph index are also important to indicate the token position in a document. We hypothesize that better contextual representations can be generated from the text encoder with richer positional information. To verify this, we propose a segment-aware BERT, by replacing the token position embedding of Transformer with a combination of paragraph index, sentence index, and token index embeddings. We pre-trained the SegaBERT on the masked language modeling task in BERT but without any affiliated tasks. Experimental results show that our pre-trained model can outperform the original BERT model on various NLP tasks.

Semantics of the Unwritten

The semantics of a text is manifested not only by what is read, but also by what is not read. In this article, we will study how those implicit "not read" information such as end-of-paragraph (EOP) and end-of-sequence (EOS) affect the quality of text generation. Transformer-based pretrained language models (LMs) have demonstrated the ability to generate long continuations with good quality. This model gives us a platform for the first time to demonstrate that paragraph layouts and text endings are also important components of human writing. Specifically, we find that pretrained LMs can generate better continuations by learning to generate the end of the paragraph (EOP) in the fine-tuning stage. Experimental results on English story generation show that EOP can lead to higher BLEU score and lower EOS perplexity. To further investigate the relationship between text ending and EOP, we conduct experiments with a self-collected Chinese essay dataset on Chinese-GPT2, a character level LM without paragraph breaker or EOS during pre-training. Experimental results show that the Chinese GPT2 can generate better essay endings with paragraph information. Experiments on both English stories and Chinese essays demonstrate that learning to end paragraphs can benefit the continuation generation with pretrained LMs.

Cross-Lingual Relevance Transfer for Document Retrieval

Recent work has shown the surprising ability of multi-lingual BERT to serve as a zero-shot cross-lingual transfer model for a number of language processing tasks. We combine this finding with a similarly-recently proposal on sentence-level relevance modeling for document retrieval to demonstrate the ability of multi-lingual BERT to transfer models of relevance across languages. Experiments on test collections in five different languages from diverse language families (Chinese, Arabic, French, Hindi, and Bengali) show that models trained with English data improve ranking quality, without any special processing, both for (non-English) mono-lingual retrieval as well as cross-lingual retrieval.

Aligning Cross-Lingual Entities with Multi-Aspect Information

Multilingual knowledge graphs (KGs), such as YAGO and DBpedia, represent entities in different languages. The task of cross-lingual entity alignment is to match entities in a source language with their counterparts in target languages. In this work, we investigate embedding-based approaches to encode entities from multilingual KGs into the same vector space, where equivalent entities are close to each other. Specifically, we apply graph convolutional networks (GCNs) to combine multi-aspect information of entities, including topological connections, relations, and attributes of entities, to learn entity embeddings. To exploit the literal descriptions of entities expressed in different languages, we propose two uses of a pretrained multilingual BERT model to bridge cross-lingual gaps. We further propose two strategies to integrate GCN-based and BERT-based modules to boost performance. Extensive experiments on two benchmark datasets demonstrate that our method significantly outperforms existing systems.

Simple BERT Models for Relation Extraction and Semantic Role Labeling

We present simple BERT-based models for relation extraction and semantic role labeling. In recent years, state-of-the-art performance has been achieved using neural models by incorporating lexical and syntactic features such as part-of-speech tags and dependency trees. In this paper, extensive experiments on datasets for these two tasks show that without using any external features, a simple BERT-based model can achieve state-of-the-art performance. To our knowledge, we are the first to successfully apply BERT in this manner. Our models provide strong baselines for future research.

Matching Entities Across Different Knowledge Graphs with Graph Embeddings

This paper explores the problem of matching entities across different knowledge graphs. Given a query entity in one knowledge graph, we wish to find the corresponding real-world entity in another knowledge graph. We formalize this problem and present two large-scale datasets for this task based on exiting cross-ontology links between DBpedia and Wikidata, focused on several hundred thousand ambiguous entities. Using a classification-based approach, we find that a simple multi-layered perceptron based on representations derived from RDF2Vec graph embeddings of entities in each knowledge graph is sufficient to achieve high accuracy, with only small amounts of training data. The contributions of our work are datasets for examining this problem and strong baselines on which future work can be based.

Simple Attention-Based Representation Learning for Ranking Short Social Media Posts

This paper explores the problem of ranking short social media posts with respect to user queries using neural networks. Instead of starting with a complex architecture, we proceed from the bottom up and examine the effectiveness of a simple, word-level Siamese architecture augmented with attention-based mechanisms for capturing semantic soft matches between query and post terms. Extensive experiments on datasets from the TREC Microblog Tracks show that our simple models not only demonstrate better effectiveness than existing approaches that are far more complex or exploit a more diverse set of relevance signals, but also achieve 4 times speedup in model training and inference.

Strong Baselines for Simple Question Answering over Knowledge Graphs with and without Neural Networks

We examine the problem of question answering over knowledge graphs, focusing on simple questions that can be answered by the lookup of a single fact. Adopting a straightforward decomposition of the problem into entity detection, entity linking, relation prediction, and evidence combination, we explore simple yet strong baselines. On the popular SimpleQuestions dataset, we find that basic LSTMs and GRUs plus a few heuristics yield accuracies that approach the state of the art, and techniques that do not use neural networks also perform reasonably well. These results show that gains from sophisticated deep learning techniques proposed in the literature are quite modest and that some previous models exhibit unnecessary complexity.