All in One: Multi-task Prompting for Graph Neural Networks

Recently, ''pre-training and fine-tuning'' has been adopted as a standard workflow for many graph tasks since it can take general graph knowledge to relieve the lack of graph annotations from each application. However, graph tasks with node level, edge level, and graph level are far diversified, making the pre-training pretext often incompatible with these multiple tasks. This gap may even cause a ''negative transfer'' to the specific application, leading to poor results. Inspired by the prompt learning in natural language processing (NLP), which has presented significant effectiveness in leveraging prior knowledge for various NLP tasks, we study the prompting topic for graphs with the motivation of filling the gap between pre-trained models and various graph tasks. In this paper, we propose a novel multi-task prompting method for graph models. Specifically, we first unify the format of graph prompts and language prompts with the prompt token, token structure, and inserting pattern. In this way, the prompting idea from NLP can be seamlessly introduced to the graph area. Then, to further narrow the gap between various graph tasks and state-of-the-art pre-training strategies, we further study the task space of various graph applications and reformulate downstream problems to the graph-level task. Afterward, we introduce meta-learning to efficiently learn a better initialization for the multi-task prompt of graphs so that our prompting framework can be more reliable and general for different tasks. We conduct extensive experiments, results from which demonstrate the superiority of our method.

AdaSelection: Accelerating Deep Learning Training through Data Subsampling

In this paper, we introduce AdaSelection, an adaptive sub-sampling method to identify the most informative sub-samples within each minibatch to speed up the training of large-scale deep learning models without sacrificing model performance. Our method is able to flexibly combines an arbitrary number of baseline sub-sampling methods incorporating the method-level importance and intra-method sample-level importance at each iteration. The standard practice of ad-hoc sampling often leads to continuous training with vast amounts of data from production environments. To improve the selection of data instances during forward and backward passes, we propose recording a constant amount of information per instance from these passes. We demonstrate the effectiveness of our method by testing it across various types of inputs and tasks, including the classification tasks on both image and language datasets, as well as regression tasks. Compared with industry-standard baselines, AdaSelection consistently displays superior performance.

An Efficient and Multi-private Key Secure Aggregation for Federated Learning

With the emergence of privacy leaks in federated learning, secure aggregation protocols that mainly adopt either homomorphic encryption or threshold secret sharing have been widely developed for federated learning to protect the privacy of the local training data of each client. However, these existing protocols suffer from many shortcomings, such as the dependence on a trusted third party, the vulnerability to clients being corrupted, low efficiency, the trade-off between security and fault tolerance, etc. To solve these disadvantages, we propose an efficient and multi-private key secure aggregation scheme for federated learning. Specifically, we skillfully modify the variant ElGamal encryption technique to achieve homomorphic addition operation, which has two important advantages: 1) The server and each client can freely select public and private keys without introducing a trust third party and 2) Compared to the variant ElGamal encryption, the plaintext space is relatively large, which is more suitable for the deep model. Besides, for the high dimensional deep model parameter, we introduce a super-increasing sequence to compress multi-dimensional data into 1-D, which can greatly reduce encryption and decryption times as well as communication for ciphertext transmission. Detailed security analyses show that our proposed scheme achieves the semantic security of both individual local gradients and the aggregated result while achieving optimal robustness in tolerating both client collusion and dropped clients. Extensive simulations demonstrate that the accuracy of our scheme is almost the same as the non-private approach, while the efficiency of our scheme is much better than the state-of-the-art homomorphic encryption-based secure aggregation schemes. More importantly, the efficiency advantages of our scheme will become increasingly prominent as the number of model parameters increases.

Deep learning radiomics for assessment of gastroesophageal varices in people with compensated advanced chronic liver disease

Objective: Bleeding from gastroesophageal varices (GEV) is a medical emergency associated with high mortality. We aim to construct an artificial intelligence-based model of two-dimensional shear wave elastography (2D-SWE) of the liver and spleen to precisely assess the risk of GEV and high-risk gastroesophageal varices (HRV). Design: A prospective multicenter study was conducted in patients with compensated advanced chronic liver disease. 305 patients were enrolled from 12 hospitals, and finally 265 patients were included, with 1136 liver stiffness measurement (LSM) images and 1042 spleen stiffness measurement (SSM) images generated by 2D-SWE. We leveraged deep learning methods to uncover associations between image features and patient risk, and thus conducted models to predict GEV and HRV. Results: A multi-modality Deep Learning Risk Prediction model (DLRP) was constructed to assess GEV and HRV, based on LSM and SSM images, and clinical information. Validation analysis revealed that the AUCs of DLRP were 0.91 for GEV (95% CI 0.90 to 0.93, p < 0.05) and 0.88 for HRV (95% CI 0.86 to 0.89, p < 0.01), which were significantly and robustly better than canonical risk indicators, including the value of LSM and SSM. Moreover, DLPR was better than the model using individual parameters, including LSM and SSM images. In HRV prediction, the 2D-SWE images of SSM outperform LSM (p < 0.01). Conclusion: DLRP shows excellent performance in predicting GEV and HRV over canonical risk indicators LSM and SSM. Additionally, the 2D-SWE images of SSM provided more information for better accuracy in predicting HRV than the LSM.

Multi-modal Pre-training for Medical Vision-language Understanding and Generation: An Empirical Study with A New Benchmark

With the availability of large-scale, comprehensive, and general-purpose vision-language (VL) datasets such as MSCOCO, vision-language pre-training (VLP) has become an active area of research and proven to be effective for various VL tasks such as visual-question answering. However, studies on VLP in the medical domain have so far been scanty. To provide a comprehensive perspective on VLP for medical VL tasks, we conduct a thorough experimental analysis to study key factors that may affect the performance of VLP with a unified vision-language Transformer. To allow making sound and quick pre-training decisions, we propose RadioGraphy Captions (RGC), a high-quality, multi-modality radiographic dataset containing 18,434 image-caption pairs collected from an open-access online database MedPix. RGC can be used as a pre-training dataset or a new benchmark for medical report generation and medical image-text retrieval. By utilizing RGC and other available datasets for pre-training, we develop several key insights that can guide future medical VLP research and new strong baselines for various medical VL tasks.

FAMO: Fast Adaptive Multitask Optimization

One of the grand enduring goals of AI is to create generalist agents that can learn multiple different tasks from diverse data via multitask learning (MTL). However, gradient descent (GD) on the average loss across all tasks may yield poor multitask performance due to severe under-optimization of certain tasks. Previous approaches that manipulate task gradients for a more balanced loss decrease require storing and computing all task gradients (O(K) space and time where K is the number of tasks), limiting their use in large-scale scenarios. In this work, we introduce Fast Adaptive Multitask Optimization (FAMO), a dynamic weighting method that decreases task losses in a balanced way using O(1) space and time. We conduct an extensive set of experiments covering multi-task supervised and reinforcement learning problems. Our results indicate that FAMO achieves comparable or superior performance to state-of-the-art gradient manipulation techniques while offering significant improvements in space and computational efficiency. Code is available at https://github.com/Cranial-XIX/FAMO.

LIBERO: Benchmarking Knowledge Transfer for Lifelong Robot Learning

Lifelong learning offers a promising paradigm of building a generalist agent that learns and adapts over its lifespan. Unlike traditional lifelong learning problems in image and text domains, which primarily involve the transfer of declarative knowledge of entities and concepts, lifelong learning in decision-making (LLDM) also necessitates the transfer of procedural knowledge, such as actions and behaviors. To advance research in LLDM, we introduce LIBERO, a novel benchmark of lifelong learning for robot manipulation. Specifically, LIBERO highlights five key research topics in LLDM: 1) how to efficiently transfer declarative knowledge, procedural knowledge, or the mixture of both; 2) how to design effective policy architectures and 3) effective algorithms for LLDM; 4) the robustness of a lifelong learner with respect to task ordering; and 5) the effect of model pretraining for LLDM. We develop an extendible procedural generation pipeline that can in principle generate infinitely many tasks. For benchmarking purpose, we create four task suites (130 tasks in total) that we use to investigate the above-mentioned research topics. To support sample-efficient learning, we provide high-quality human-teleoperated demonstration data for all tasks. Our extensive experiments present several insightful or even unexpected discoveries: sequential finetuning outperforms existing lifelong learning methods in forward transfer, no single visual encoder architecture excels at all types of knowledge transfer, and naive supervised pretraining can hinder agents' performance in the subsequent LLDM. Check the website at https://libero-project.github.io for the code and the datasets.

Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge

The ability to automatically detect and track surgical instruments in endoscopic videos can enable transformational interventions. Assessing surgical performance and efficiency, identifying skilled tool use and choreography, and planning operational and logistical aspects of OR resources are just a few of the applications that could benefit. Unfortunately, obtaining the annotations needed to train machine learning models to identify and localize surgical tools is a difficult task. Annotating bounding boxes frame-by-frame is tedious and time-consuming, yet large amounts of data with a wide variety of surgical tools and surgeries must be captured for robust training. Moreover, ongoing annotator training is needed to stay up to date with surgical instrument innovation. In robotic-assisted surgery, however, potentially informative data like timestamps of instrument installation and removal can be programmatically harvested. The ability to rely on tool installation data alone would significantly reduce the workload to train robust tool-tracking models. With this motivation in mind we invited the surgical data science community to participate in the challenge, SurgToolLoc 2022. The goal was to leverage tool presence data as weak labels for machine learning models trained to detect tools and localize them in video frames with bounding boxes. We present the results of this challenge along with many of the team's efforts. We conclude by discussing these results in the broader context of machine learning and surgical data science. The training data used for this challenge consisting of 24,695 video clips with tool presence labels is also being released publicly and can be accessed at https://console.cloud.google.com/storage/browser/isi-surgtoolloc-2022.

Multi-hop Commonsense Knowledge Injection Framework for Zero-Shot Commonsense Question Answering

Commonsense question answering (QA) research requires machines to answer questions based on commonsense knowledge. However, this research requires expensive labor costs to annotate data as the basis of research, and models that rely on fine-tuning paradigms only apply to specific tasks, rather than learn a general commonsense reasoning ability. As a more robust method, zero-shot commonsense question answering shows a good prospect. The current zero-shot framework tries to convert triples in commonsense knowledge graphs (KGs) into QA-form samples as the pre-trained data source to incorporate commonsense knowledge into the model. However, this method ignores the multi-hop relationship in the KG, which is also an important central problem in commonsense reasoning. In this paper, we propose a novel multi-hop commonsense knowledge injection framework. Specifically, it explores multi-hop reasoning paradigm in KGs that conform to linguistic logic, and we further propose two multi-hop QA generation methods based on KGs. Then, we utilize contrastive learning to pre-train the model with the synthetic QA dataset to inject multi-hop commonsense knowledge. Extensive experiments on five commonsense question answering benchmarks demonstrate that our framework achieves state-of-art performance.

DPMLBench: Holistic Evaluation of Differentially Private Machine Learning

Differential privacy (DP), as a rigorous mathematical definition quantifying privacy leakage, has become a well-accepted standard for privacy protection. Combined with powerful machine learning techniques, differentially private machine learning (DPML) is increasingly important. As the most classic DPML algorithm, DP-SGD incurs a significant loss of utility, which hinders DPML's deployment in practice. Many studies have recently proposed improved algorithms based on DP-SGD to mitigate utility loss. However, these studies are isolated and cannot comprehensively measure the performance of improvements proposed in algorithms. More importantly, there is a lack of comprehensive research to compare improvements in these DPML algorithms across utility, defensive capabilities, and generalizability. We fill this gap by performing a holistic measurement of improved DPML algorithms on utility and defense capability against membership inference attacks (MIAs) on image classification tasks. We first present a taxonomy of where improvements are located in the machine learning life cycle. Based on our taxonomy, we jointly perform an extensive measurement study of the improved DPML algorithms. We also cover state-of-the-art label differential privacy (Label DP) algorithms in the evaluation. According to our empirical results, DP can effectively defend against MIAs, and sensitivity-bounding techniques such as per-sample gradient clipping play an important role in defense. We also explore some improvements that can maintain model utility and defend against MIAs more effectively. Experiments show that Label DP algorithms achieve less utility loss but are fragile to MIAs. To support our evaluation, we implement a modular re-usable software, DPMLBench, which enables sensitive data owners to deploy DPML algorithms and serves as a benchmark tool for researchers and practitioners.