Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, China
Abstract:The limited context window of contemporary large language models (LLMs) remains a primary bottleneck for their broader application across diverse domains. Although continual pre-training on long-context data offers a straightforward solution, it incurs prohibitive data acquisition and computational costs. To address this challenge, we propose~\modelname, a novel framework based on multi-grained context compression and query-aware information acquisition. SharedLLM comprises two stacked short-context LLMs: a lower model serving as a compressor and an upper model acting as a decoder. The lower model compresses long inputs into compact, multi-grained representations, which are then forwarded to the upper model for context-aware processing. To maximize efficiency, this information transfer occurs exclusively at the lowest layers, bypassing lengthy forward passes and redundant cross-attention operations. This entire process, wherein the upper and lower models are derived from the same underlying LLM layers, is termed~\textit{self-injection}. To support this architecture, a specialized tree-based data structure enables the efficient encoding and query-aware retrieval of contextual information. Despite being trained on sequences of only 8K tokens, \modelname~effectively generalizes to inputs exceeding 128K tokens. Across a comprehensive suite of long-context modeling and understanding benchmarks, \modelname~achieves performance superior or comparable to strong baselines, striking an optimal balance between efficiency and accuracy. Furthermore, these design choices allow \modelname~to substantially reduce the memory footprint and yield notable inference speedups ($2\times$ over streaming and $3\times$ over encoder-decoder architectures).
Abstract:The automatic generation of medical reports utilizing Multimodal Large Language Models (MLLMs) frequently encounters challenges related to factual instability, which may manifest as the omission of findings or the incorporation of inaccurate information, thereby constraining their applicability in clinical settings. Current methodologies typically produce reports based directly on image features, which inherently lack a definitive factual basis. In response to this limitation, we introduce Fact-Flow, an innovative framework that separates the process of visual fact identification from the generation of reports. This is achieved by initially predicting clinical findings from the image, which subsequently directs the MLLM to produce a report that is factually precise. A pivotal advancement of our approach is a pipeline that leverages a Large Language Model (LLM) to autonomously create a dataset of labeled medical findings, effectively eliminating the need for expensive manual annotation. Extensive experimental evaluations conducted on two disease-focused medical datasets validate the efficacy of our method, demonstrating a significant enhancement in factual accuracy compared to state-of-the-art models, while concurrently preserving high standards of text quality.
Abstract:This study addresses a critical challenge in AI-based weather forecasting by developing an AI-driven optimized ensemble forecast system using Orthogonal Conditional Nonlinear Optimal Perturbations (O-CNOPs). The system bridges the gap between computational efficiency and dynamic consistency in tropical cyclone (TC) forecasting. Unlike conventional ensembles limited by computational costs or AI ensembles constrained by inadequate perturbation methods, O-CNOPs generate dynamically optimized perturbations that capture fast-growing errors of FuXi model while maintaining plausibility. The key innovation lies in producing orthogonal perturbations that respect FuXi nonlinear dynamics, yielding structures reflecting dominant dynamical controls and physically interpretable probabilistic forecasts. Demonstrating superior deterministic and probabilistic skills over the operational Integrated Forecasting System Ensemble Prediction System, this work establishes a new paradigm combining AI computational advantages with rigorous dynamical constraints. Success in TC track forecasting paves the way for reliable ensemble forecasts of other high-impact weather systems, marking a major step toward operational AI-based ensemble forecasting.
Abstract:Recent deep search agents built on large reasoning models (LRMs) excel at complex question answering by iteratively planning, acting, and gathering evidence, a capability known as search-integrated reasoning. However, mainstream approaches often train this ability using only outcome-based supervision, neglecting the quality of intermediate thoughts and actions. We introduce SRR-Judge, a framework for reliable step-level assessment of reasoning and search actions. Integrated into a modified ReAct-style rate-and-refine workflow, SRR-Judge provides fine-grained guidance for search-integrated reasoning and enables efficient post-training annotation. Using SRR-annotated data, we apply an iterative rejection sampling fine-tuning procedure to enhance the deep search capability of the base agent. Empirically, SRR-Judge delivers more reliable step-level evaluations than much larger models such as DeepSeek-V3.1, with its ratings showing strong correlation with final answer correctness. Moreover, aligning the policy with SRR-Judge annotated trajectories leads to substantial performance gains, yielding over a 10 percent average absolute pass@1 improvement across challenging deep search benchmarks.
Abstract:Existing NL2SQL systems face two critical limitations: (1) they rely on in-context learning with only correct examples, overlooking the rich signal in historical error-fix pairs that could guide more robust self-correction; and (2) test-time scaling approaches often decompose questions arbitrarily, producing near-identical SQL candidates across runs and diminishing ensemble gains. Moreover, these methods suffer from a stark accuracy-efficiency trade-off: high performance demands excessive computation, while fast variants compromise quality. We present Memo-SQL, a training-free framework that addresses these issues through two simple ideas: structured decomposition and experience-aware self-correction. Instead of leaving decomposition to chance, we apply three clear strategies, entity-wise, hierarchical, and atomic sequential, to encourage diverse reasoning. For correction, we build a dynamic memory of both successful queries and historical error-fix pairs, and use retrieval-augmented prompting to bring relevant examples into context at inference time, no fine-tuning or external APIs required. On BIRD, Memo-SQL achieves 68.5% execution accuracy, setting a new state of the art among open, zero-fine-tuning methods, while using over 10 times fewer resources than prior TTS approaches.
Abstract:Post-training of large language models routinely interleaves supervised fine-tuning (SFT) with reinforcement learning (RL). These two methods have different objectives: SFT minimizes the cross-entropy loss between model outputs and expert responses, while RL maximizes reward signals derived from human preferences or rule-based verifiers. Modern reasoning models have widely adopted the practice of alternating SFT and RL training. However, there is no theoretical account of whether they can be decoupled. We prove that decoupling is impossible in either order: (1) SFT-then-RL coupling: RL increases SFT loss under SFT optimality and (2) RL-then-SFT coupling: SFT lowers the reward achieved by RL. Experiments on Qwen3-0.6B confirm the predicted degradation, verifying that SFT and RL cannot be separated without loss of prior performance in the post-training
Abstract:With the rapid growth of video content on social media, video summarization has become a crucial task in multimedia processing. However, existing methods face challenges in capturing global dependencies in video content and accommodating multimodal user customization. Moreover, temporal proximity between video frames does not always correspond to semantic proximity. To tackle these challenges, we propose a novel Language-guided Graph Representation Learning Network (LGRLN) for video summarization. Specifically, we introduce a video graph generator that converts video frames into a structured graph to preserve temporal order and contextual dependencies. By constructing forward, backward and undirected graphs, the video graph generator effectively preserves the sequentiality and contextual relationships of video content. We designed an intra-graph relational reasoning module with a dual-threshold graph convolution mechanism, which distinguishes semantically relevant frames from irrelevant ones between nodes. Additionally, our proposed language-guided cross-modal embedding module generates video summaries with specific textual descriptions. We model the summary generation output as a mixture of Bernoulli distribution and solve it with the EM algorithm. Experimental results show that our method outperforms existing approaches across multiple benchmarks. Moreover, we proposed LGRLN reduces inference time and model parameters by 87.8% and 91.7%, respectively. Our codes and pre-trained models are available at https://github.com/liwrui/LGRLN.
Abstract:Extreme precipitation nowcasting demands high spatiotemporal fidelity and extended lead times, yet existing approaches remain limited. Numerical Weather Prediction (NWP) and its deep-learning emulations are too slow and coarse for rapidly evolving convection, while extrapolation and purely data-driven models suffer from error accumulation and excessive smoothing. Hybrid 2D radar-based methods discard crucial vertical information, preventing accurate reconstruction of height-dependent dynamics. We introduce a gray-box, fully three-dimensional nowcasting framework that directly processes volumetric radar reflectivity and couples physically constrained neural operators with datadriven learning. The model learns vertically varying 3D advection fields under a conservative advection operator, parameterizes spatially varying diffusion, and introduces a Brownian-motion--inspired stochastic term to represent unresolved motions. A residual branch captures small-scale convective initiation and microphysical variability, while a diffusion-based stochastic module estimates uncertainty. The framework achieves more accurate forecasts up to three-hour lead time across precipitation regimes and ranked first in 57\% of cases in a blind evaluation by 160 meteorologists. By restoring full 3D dynamics with physical consistency, it offers a scalable and robust pathway for skillful and reliable nowcasting of extreme precipitation.
Abstract:Deep Research systems have revolutionized how LLMs solve complex questions through iterative reasoning and evidence gathering. However, current systems remain fundamentally constrained to textual web data, overlooking the vast knowledge embedded in multimodal documents Processing such documents demands sophisticated parsing to preserve visual semantics (figures, tables, charts, and equations), intelligent chunking to maintain structural coherence, and adaptive retrieval across modalities, which are capabilities absent in existing systems. In response, we present Doc-Researcher, a unified system that bridges this gap through three integrated components: (i) deep multimodal parsing that preserves layout structure and visual semantics while creating multi-granular representations from chunk to document level, (ii) systematic retrieval architecture supporting text-only, vision-only, and hybrid paradigms with dynamic granularity selection, and (iii) iterative multi-agent workflows that decompose complex queries, progressively accumulate evidence, and synthesize comprehensive answers across documents and modalities. To enable rigorous evaluation, we introduce M4DocBench, the first benchmark for Multi-modal, Multi-hop, Multi-document, and Multi-turn deep research. Featuring 158 expert-annotated questions with complete evidence chains across 304 documents, M4DocBench tests capabilities that existing benchmarks cannot assess. Experiments demonstrate that Doc-Researcher achieves 50.6% accuracy, 3.4xbetter than state-of-the-art baselines, validating that effective document research requires not just better retrieval, but fundamentally deep parsing that preserve multimodal integrity and support iterative research. Our work establishes a new paradigm for conducting deep research on multimodal document collections.
Abstract:Knowledge of the medical decision process, which can be modeled as medical decision trees (MDTs), is critical to building clinical decision support systems. However, current MDT construction methods rely heavily on time-consuming and laborious manual annotation. To address this challenge, we propose PI-LoRA (Path-Integrated LoRA), a novel low-rank adaptation method for automatically extracting MDTs from clinical guidelines and textbooks. We integrate gradient path information to capture synergistic effects between different modules, enabling more effective and reliable rank allocation. This framework ensures that the most critical modules receive appropriate rank allocations while less important ones are pruned, resulting in a more efficient and accurate model for extracting medical decision trees from clinical texts. Extensive experiments on medical guideline datasets demonstrate that our PI-LoRA method significantly outperforms existing parameter-efficient fine-tuning approaches for the Text2MDT task, achieving better accuracy with substantially reduced model complexity. The proposed method achieves state-of-the-art results while maintaining a lightweight architecture, making it particularly suitable for clinical decision support systems where computational resources may be limited.