GATHER: Convergence-Centric Hyper-Entity Retrieval for Zero-Shot Cell-Type Annotation

Zero-shot single-cell cell-type annotation aims to determine a cell's type from a given set of expressed genes without any training. Existing knowledge-graph-based RAG approaches retrieve evidence by expanding from source entities and relying on iterative LLM reasoning. However, in this setting each query contains tens to hundreds of genes, where no single gene is decisive and the label emerges only from their collective co-occurrence. Such hyper-entity queries fundamentally challenge local, entity-wise exploration strategies, which reason from individual genes, leading to poor scalability and substantial LLM cost. We propose GATHER (Graph-Aware Traversal with Hyper-Entity Retrieval), a convergence-centric retriever tailored to hyper-entity queries. It performs global multi-source graph traversal and identifies topological convergence points -- nodes jointly reachable from many input genes. These convergence nodes act as high-information hyper-entities that capture entity synergy. By incorporating node- and path-importance scoring, GATHER selects informative evidence entirely without LLM involvement during retrieval. Instantiated on a self-constructed cell-centric biological knowledge graph (VCKG), GATHER outperforms strong KG-RAG baselines (ToG, ToG-2, RoG, PoG) on two datasets (Immune and Lung), achieving the highest exact-match accuracy (27.45% and 59.64%) with only a single LLM call per sample, compared to 2--61 calls for KG-RAG baselines. Our results demonstrate that convergence nodes compress multi-entity signals into compact, high-information evidence that conveys more per item than multi-hop paths, providing an efficient global alternative to local entity-wise reasoning.

PatRe: A Full-Stage Office Action and Rebuttal Generation Benchmark for Patent Examination

Patent examination is a complex, multi-stage process requiring both technical expertise and legal reasoning, increasingly challenged by rising application volumes. Prior benchmarks predominantly view patent examination as discriminative classification or static extraction, failing to capture its inherently interactive and iterative nature, similar to the peer review and rebuttal process in academic publishing. In this paper, we introduce PatRe, the first benchmark that models the full patent examination lifecycle, including Office Action generation and applicant rebuttal. PatRe comprises 480 real-world cases and supports both oracle and retrieval-simulated evaluation settings. Our benchmark reframes patent examination as a dynamic, multi-turn process of justification and response. Extensive experiments across various LLMs reveal critical insights into model performance, including differences between proprietary and open-source models, as well as task asymmetries between examiner analysis and applicant-side rebuttal. These findings highlight both the potential and current limitations of LLMs in modeling complex, real-world legal reasoning and technical novelty judgment in patent examination. We release our code and dataset to facilitate future research on patent examination modeling.

Nearly Optimal Subdata Selection

When, in terms of the number of data points, the size of a dataset exceeds available computing resources, or when labeling is expensive, an attractive solution consists of selecting only some of the data points (subdata) for further consideration. A central question for selecting subdata of size $n$ from $N$ available data points is which $n$ points to select. While an answer to this question depends on the objective, one approach for a parametric model and a focus on parameter estimation is to select subdata that retains maximal information. Identifying such subdata is a classical NP-hard problem due to its inherent discreteness. Based on optimal approximate design theory, we develop a new methodology for information-based subdata selection, resulting in subdata that approaches the optimal solution. To achieve this, we develop a novel algorithm that applies to a general model, accommodates arbitrary choices of $N$ and $n$, and supports multiple optimality criteria, and we prove its convergence. Moreover, the new methodology facilitates an assessment of the efficiency of subdata selected by any method by obtaining tight lower and upper bounds for the efficiency. We show that the subdata obtained through the new methodology is highly efficient and outperforms all existing methods.

Improving Vision-language Models with Perception-centric Process Reward Models

Recent advancements in reinforcement learning with verifiable rewards (RLVR) have significantly improved the complex reasoning ability of vision-language models (VLMs). However, its outcome-level supervision is too coarse to diagnose and correct errors within the reasoning chain. To this end, we propose Perceval, a process reward model (PRM) that enables token-level error grounding, which can extract image-related claims from the response and compare them one by one with the visual evidence in the image, ultimately returning claims that contain perceptual errors. Perceval is trained with perception-intensive supervised training data. We then integrate Perceval into the RL training process to train the policy models. Specifically, compared to traditional GRPO, which applies sequence-level advantages, we apply token-level advantages by targeting penalties on hallucinated spans identified by Perceval, thus enabling fine-grained supervision signals. In addition to augmenting the training process, Perceval can also assist VLMs during the inference stage. Using Perceval, we can truncate the erroneous portions of the model's response, and then either have the model regenerate the response directly or induce the model to reflect on its previous output. This process can be repeated multiple times to achieve test-time scaling. Experiments show significant improvements on benchmarks from various domains across multiple reasoning VLMs trained with RL, highlighting the promise of perception-centric supervision as a general-purpose strategy. For test-time scaling, it also demonstrates consistent performance gains over other strategies, such as major voting. Our code and data will be publicly released at https://github.com/RUCAIBox/Perceval.

From Anchors to Supervision: Memory-Graph Guided Corpus-Free Unlearning for Large Language Models

Large language models (LLMs) may memorize sensitive or copyrighted content, raising significant privacy and legal concerns. While machine unlearning has emerged as a potential remedy, prevailing paradigms rely on user-provided forget sets, making unlearning requests difficult to audit and exposing systems to secondary leakage and malicious abuse. We propose MAGE, a Memory-grAph Guided Erasure framework for user-minimized, corpus-free unlearning. Given only a lightweight user anchor that identifies a target entity, MAGE probes the target LLM to recover target-related memorization, organizes it into a weighted local memory graph, and synthesizes scoped supervision for unlearning. MAGE is model-agnostic, can be plugged into standard unlearning methods, and requires no access to the original training corpus. Experiments on two benchmarks, TOFU and RWKU, demonstrate that MAGE's self-generated supervision achieves effective unlearning performance comparable to supervision generated with external reference, while preserving overall utility. These results support a practical and auditable unlearning workflow driven by minimal anchors rather than user-supplied forget corpora.

TInR: Exploring Tool-Internalized Reasoning in Large Language Models

Tool-Integrated Reasoning (TIR) has emerged as a promising direction by extending Large Language Models' (LLMs) capabilities with external tools during reasoning. Existing TIR methods typically rely on external tool documentation during reasoning. However, this leads to tool mastery difficulty, tool size constraints, and inference inefficiency. To mitigate these issues, we explore Tool-Internalized Reasoning (TInR), aiming at facilitating reasoning with tool knowledge internalized into LLMs. Achieving this goal presents notable requirements, including tool internalization and tool-reasoning coordination. To address them, we propose TInR-U, a tool-internalized reasoning framework for unified reasoning and tool usage. TInR-U is trained through a three-phase pipeline: 1) tool internalization with a bidirectional knowledge alignment strategy; 2) supervised fine-tuning warm-up using high-quality reasoning annotations, and 3) reinforcement learning with TInR-specific rewards. We comprehensively evaluate our method across in-domain and out-of-domain settings. Experiment results show that TInR-U achieves superior performance in both settings, highlighting its effectiveness and efficiency.

FlowGuard: Towards Lightweight In-Generation Safety Detection for Diffusion Models via Linear Latent Decoding

Diffusion-based image generation models have advanced rapidly but pose a safety risk due to their potential to generate Not-Safe-For-Work (NSFW) content. Existing NSFW detection methods mainly operate either before or after image generation. Pre-generation methods rely on text prompts and struggle with the gap between prompt safety and image safety. Post-generation methods apply classifiers to final outputs, but they are poorly suited to intermediate noisy images. To address this, we introduce FlowGuard, a cross-model in-generation detection framework that inspects intermediate denoising steps. This is particularly challenging in latent diffusion, where early-stage noise obscures visual signals. FlowGuard employs a novel linear approximation for latent decoding and leverages a curriculum learning approach to stabilize training. By detecting unsafe content early, FlowGuard reduces unnecessary diffusion steps to cut computational costs. Our cross-model benchmark spanning nine diffusion-based backbones shows the effectiveness of FlowGuard for in-generation NSFW detection in both in-distribution and out-of-distribution settings, outperforming existing methods by over 30% in F1 score while delivering transformative efficiency gains, including slashing peak GPU memory demand by over 97% and projection time from 8.1 seconds to 0.2 seconds compared to standard VAE decoding.

SCOT: Multi-Source Cross-City Transfer with Optimal-Transport Soft-Correspondence Objective

Cross-city transfer improves prediction in label-scarce cities by leveraging labeled data from other cities, but it becomes challenging when cities adopt incompatible partitions and no ground-truth region correspondences exist. Existing approaches either rely on heuristic region matching, which is often sensitive to anchor choices, or perform distribution-level alignment that leaves correspondences implicit and can be unstable under strong heterogeneity. We propose SCOT, a cross-city representation learning framework that learns explicit soft correspondences between unequal region sets via Sinkhorn-based entropic optimal transport. SCOT further sharpens transferable structure with an OT-weighted contrastive objective and stabilizes optimization through a cycle-style reconstruction regularizer. For multi-source transfer, SCOT aligns each source and the target to a shared prototype hub using balanced entropic transport guided by a target-induced prototype prior. Across real-world cities and tasks, SCOT consistently improves transfer accuracy and robustness, while the learned transport couplings and hub assignments provide interpretable diagnostics of alignment quality.

DEFT: Distribution-guided Efficient Fine-Tuning for Human Alignment

Reinforcement Learning from Human Feedback (RLHF), using algorithms like Proximal Policy Optimization (PPO), aligns Large Language Models (LLMs) with human values but is costly and unstable. Alternatives have been proposed to replace PPO or integrate Supervised Fine-Tuning (SFT) and contrastive learning for direct fine-tuning and value alignment. However, these methods still require voluminous data to learn preferences and may weaken the generalization ability of LLMs. To further enhance alignment efficiency and performance while mitigating the loss of generalization ability, this paper introduces Distribution-guided Efficient Fine-Tuning (DEFT), an efficient alignment framework incorporating data filtering and distributional guidance by calculating the differential distribution reward based on the output distribution of language model and the discrepancy distribution of preference data. A small yet high-quality subset is filtered from the raw data using a differential distribution reward, which is then incorporated into existing alignment methods to guide the model's output distribution. Experimental results demonstrate that the methods enhanced by DEFT outperform the original methods in both alignment capability and generalization ability, with significantly reduced training time.

PLOT: Enhancing Preference Learning via Optimal Transport

Preference learning in Large Language Models (LLMs) has advanced significantly, yet existing methods remain limited by modest performance gains, high computational costs, hyperparameter sensitivity, and insufficient modeling of global token-level relationships. We introduce PLOT, which enhances Preference Learning in fine-tuning-based alignment through a token-level loss derived from Optimal Transport. By formulating preference learning as an Optimal Transport Problem, PLOT aligns model outputs with human preferences while preserving the original distribution of LLMs, ensuring stability and robustness. Furthermore, PLOT leverages token embeddings to capture semantic relationships, enabling globally informed optimization. Experiments across two preference categories - Human Values and Logic & Problem Solving - spanning seven subpreferences demonstrate that PLOT consistently improves alignment performance while maintaining fluency and coherence. These results substantiate optimal transport as a principled methodology for preference learning, establishing a theoretically grounded framework that provides new insights for preference learning of LLMs.