Samba: Semantic Segmentation of Remotely Sensed Images with State Space Model

High-resolution remotely sensed images pose a challenge for commonly used semantic segmentation methods such as Convolutional Neural Network (CNN) and Vision Transformer (ViT). CNN-based methods struggle with handling such high-resolution images due to their limited receptive field, while ViT faces challenges in handling long sequences. Inspired by Mamba, which adopts a State Space Model (SSM) to efficiently capture global semantic information, we propose a semantic segmentation framework for high-resolution remotely sensed images, named Samba. Samba utilizes an encoder-decoder architecture, with Samba blocks serving as the encoder for efficient multi-level semantic information extraction, and UperNet functioning as the decoder. We evaluate Samba on the LoveDA, ISPRS Vaihingen, and ISPRS Potsdam datasets, comparing its performance against top-performing CNN and ViT methods. The results reveal that Samba achieved unparalleled performance on commonly used remote sensing datasets for semantic segmentation. Our proposed Samba demonstrates for the first time the effectiveness of SSM in semantic segmentation of remotely sensed images, setting a new benchmark in performance for Mamba-based techniques in this specific application. The source code and baseline implementations are available at https://github.com/zhuqinfeng1999/Samba.

Toward FAIR Semantic Publishing of Research Dataset Metadata in the Open Research Knowledge Graph

Search engines these days can serve datasets as search results. Datasets get picked up by search technologies based on structured descriptions on their official web pages, informed by metadata ontologies such as the Dataset content type of schema.org. Despite this promotion of the content type dataset as a first-class citizen of search results, a vast proportion of datasets, particularly research datasets, still need to be made discoverable and, therefore, largely remain unused. This is due to the sheer volume of datasets released every day and the inability of metadata to reflect a dataset's content and context accurately. This work seeks to improve this situation for a specific class of datasets, namely research datasets, which are the result of research endeavors and are accompanied by a scholarly publication. We propose the ORKG-Dataset content type, a specialized branch of the Open Research Knowledge Graoh (ORKG) platform, which provides descriptive information and a semantic model for research datasets, integrating them with their accompanying scholarly publications. This work aims to establish a standardized framework for recording and reporting research datasets within the ORKG-Dataset content type. This, in turn, increases research dataset transparency on the web for their improved discoverability and applied use. In this paper, we present a proposal -- the minimum FAIR, comparable, semantic description of research datasets in terms of salient properties of their supporting publication. We design a specific application of the ORKG-Dataset semantic model based on 40 diverse research datasets on scientific information extraction.

Information Extraction: An application to the domain of hyper-local financial data on developing countries

Despite the need for financial data on company activities in developing countries for development research and economic analysis, such data does not exist. In this project, we develop and evaluate two Natural Language Processing (NLP) based techniques to address this issue. First, we curate a custom dataset specific to the domain of financial text data on developing countries and explore multiple approaches for information extraction. We then explore a text-to-text approach with the transformer-based T5 model with the goal of undertaking simultaneous NER and relation extraction. We find that this model is able to learn the custom text structure output data corresponding to the entities and their relations, resulting in an accuracy of 92.44\%, a precision of 68.25\% and a recall of 54.20\% from our best T5 model on the combined task. Secondly, we explore an approach with sequential NER and relation extration. For the NER, we run pre-trained and fine-tuned models using SpaCy, and we develop a custom relation extraction model using SpaCy's Dependency Parser output and some heuristics to determine entity relationships \cite{spacy}. We obtain an accuracy of 84.72\%, a precision of 6.06\% and a recall of 5.57\% on this sequential task.

Opportunistic Information-Bottleneck for Goal-oriented Feature Extraction and Communication

The Information Bottleneck (IB) method is an information theoretical framework to design a parsimonious and tunable feature-extraction mechanism, such that the extracted features are maximally relevant to a specific learning or inference task. Despite its theoretical value, the IB is based on a functional optimization problem that admits a closed form solution only on specific cases (e.g., Gaussian distributions), making it difficult to be applied in most applications, where it is necessary to resort to complex and approximated variational implementations. To overcome this limitation, we propose an approach to adapt the closed-form solution of the Gaussian IB to a general task. Whichever is the inference task to be performed by a (possibly deep) neural-network, the key idea is to opportunistically design a regression sub-task, embedded in the original problem, where we can safely assume a (joint) multivariate normality between the sub-task's inputs and outputs. In this way we can exploit a fixed and pre-trained neural network to process the input data, using a tunable number of features, to trade data-size and complexity for accuracy. This approach is particularly useful every time a device needs to transmit data (or features) to a server that has to fulfil an inference task, as it provides a principled way to extract the most relevant features for the task to be executed, while looking for the best trade-off between the size of the feature vector to be transmitted, inference accuracy, and complexity. Extensive simulation results testify the effectiveness of the proposed methodhttps://info.arxiv.org/help/prep#comments and encourage to further investigate this research line.

Extract, Define, Canonicalize: An LLM-based Framework for Knowledge Graph Construction

In this work, we are interested in automated methods for knowledge graph creation (KGC) from input text. Progress on large language models (LLMs) has prompted a series of recent works applying them to KGC, e.g., via zero/few-shot prompting. Despite successes on small domain-specific datasets, these models face difficulties scaling up to text common in many real-world applications. A principal issue is that in prior methods, the KG schema has to be included in the LLM prompt to generate valid triplets; larger and more complex schema easily exceed the LLMs' context window length. To address this problem, we propose a three-phase framework named Extract-Define-Canonicalize (EDC): open information extraction followed by schema definition and post-hoc canonicalization. EDC is flexible in that it can be applied to settings where a pre-defined target schema is available and when it is not; in the latter case, it constructs a schema automatically and applies self-canonicalization. To further improve performance, we introduce a trained component that retrieves schema elements relevant to the input text; this improves the LLMs' extraction performance in a retrieval-augmented generation-like manner. We demonstrate on three KGC benchmarks that EDC is able to extract high-quality triplets without any parameter tuning and with significantly larger schemas compared to prior works.

Emotion-cause pair extraction method based on multi-granularity information and multi-module interaction

The purpose of emotion-cause pair extraction is to extract the pair of emotion clauses and cause clauses. On the one hand, the existing methods do not take fully into account the relationship between the emotion extraction of two auxiliary tasks. On the other hand, the existing two-stage model has the problem of error propagation. In addition, existing models do not adequately address the emotion and cause-induced locational imbalance of samples. To solve these problems, an end-to-end multitasking model (MM-ECPE) based on shared interaction between GRU, knowledge graph and transformer modules is proposed. Furthermore, based on MM-ECPE, in order to use the encoder layer to better solve the problem of imbalanced distribution of clause distances between clauses and emotion clauses, we propose a novel encoding based on BERT, sentiment lexicon, and position-aware interaction module layer of emotion motif pair retrieval model (MM-ECPE(BERT)). The model first fully models the interaction between different tasks through the multi-level sharing module, and mines the shared information between emotion-cause pair extraction and the emotion extraction and cause extraction. Second, to solve the imbalanced distribution of emotion clauses and cause clauses problem, suitable labels are screened out according to the knowledge graph path length and task-specific features are constructed so that the model can focus on extracting pairs with corresponding emotion-cause relationships. Experimental results on the ECPE benchmark dataset show that the proposed model achieves good performance, especially on position-imbalanced samples.

A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models

Medical imaging is critical to the diagnosis, surveillance, and treatment of many health conditions, including oncological, neurological, cardiovascular, and musculoskeletal disorders, among others. Radiologists interpret these complex, unstructured images and articulate their assessments through narrative reports that remain largely unstructured. This unstructured narrative must be converted into a structured semantic representation to facilitate secondary applications such as retrospective analyses or clinical decision support. Here, we introduce the Corpus of Annotated Medical Imaging Reports (CAMIR), which includes 609 annotated radiology reports from three imaging modality types: Computed Tomography, Magnetic Resonance Imaging, and Positron Emission Tomography-Computed Tomography. Reports were annotated using an event-based schema that captures clinical indications, lesions, and medical problems. Each event consists of a trigger and multiple arguments, and a majority of the argument types, including anatomy, normalize the spans to pre-defined concepts to facilitate secondary use. CAMIR uniquely combines a granular event structure and concept normalization. To extract CAMIR events, we explored two BERT (Bi-directional Encoder Representation from Transformers)-based architectures, including an existing architecture (mSpERT) that jointly extracts all event information and a multi-step approach (PL-Marker++) that we augmented for the CAMIR schema.

LR-FPN: Enhancing Remote Sensing Object Detection with Location Refined Feature Pyramid Network

Remote sensing target detection aims to identify and locate critical targets within remote sensing images, finding extensive applications in agriculture and urban planning. Feature pyramid networks (FPNs) are commonly used to extract multi-scale features. However, existing FPNs often overlook extracting low-level positional information and fine-grained context interaction. To address this, we propose a novel location refined feature pyramid network (LR-FPN) to enhance the extraction of shallow positional information and facilitate fine-grained context interaction. The LR-FPN consists of two primary modules: the shallow position information extraction module (SPIEM) and the contextual interaction module (CIM). Specifically, SPIEM first maximizes the retention of solid location information of the target by simultaneously extracting positional and saliency information from the low-level feature map. Subsequently, CIM injects this robust location information into different layers of the original FPN through spatial and channel interaction, explicitly enhancing the object area. Moreover, in spatial interaction, we introduce a simple local and non-local interaction strategy to learn and retain the saliency information of the object. Lastly, the LR-FPN can be readily integrated into common object detection frameworks to improve performance significantly. Extensive experiments on two large-scale remote sensing datasets (i.e., DOTAV1.0 and HRSC2016) demonstrate that the proposed LR-FPN is superior to state-of-the-art object detection approaches. Our code and models will be publicly available.

A Question Answering Based Pipeline for Comprehensive Chinese EHR Information Extraction

Electronic health records (EHRs) hold significant value for research and applications. As a new way of information extraction, question answering (QA) can extract more flexible information than conventional methods and is more accessible to clinical researchers, but its progress is impeded by the scarcity of annotated data. In this paper, we propose a novel approach that automatically generates training data for transfer learning of QA models. Our pipeline incorporates a preprocessing module to handle challenges posed by extraction types that are not readily compatible with extractive QA frameworks, including cases with discontinuous answers and many-to-one relationships. The obtained QA model exhibits excellent performance on subtasks of information extraction in EHRs, and it can effectively handle few-shot or zero-shot settings involving yes-no questions. Case studies and ablation studies demonstrate the necessity of each component in our design, and the resulting model is deemed suitable for practical use.

On the use of Silver Standard Data for Zero-shot Classification Tasks in Information Extraction

The superior performance of supervised classification methods in the information extraction (IE) area heavily relies on a large amount of gold standard data. Recent zero-shot classification methods converted the task to other NLP tasks (e.g., textual entailment) and used off-the-shelf models of these NLP tasks to directly perform inference on the test data without using a large amount of IE annotation data. A potentially valuable by-product of these methods is the large-scale silver standard data, i.e., pseudo-labeled data by the off-the-shelf models of other NLP tasks. However, there is no further investigation into the use of these data. In this paper, we propose a new framework, Clean-LaVe, which aims to utilize silver standard data to enhance the zero-shot performance. Clean-LaVe includes four phases: (1) Obtaining silver data; (2) Identifying relatively clean data from silver data; (3) Finetuning the off-the-shelf model using clean data; (4) Inference on the test data. The experimental results show that Clean-LaVe can outperform the baseline by 5% and 6% on TACRED and Wiki80 dataset in the zero-shot relation classification task, and by 3%-7% on Smile (Korean and Polish) in the zero-shot cross-lingual relation classification task, and by 8% on ACE05-E+ in the zero-shot event argument classification task. The code is share in https://github.com/wjw136/Clean_LaVe.git.