A Theoretical Framework for Environmental Similarity and Vessel Mobility as Coupled Predictors of Marine Invasive Species Pathways

Marine invasive species spread through global shipping and generate substantial ecological and economic impacts. Traditional risk assessments require detailed records of ballast water and traffic patterns, which are often incomplete, limiting global coverage. This work advances a theoretical framework that quantifies invasion risk by combining environmental similarity across ports with observed and forecasted maritime mobility. Climate-based feature representations characterize each port's marine conditions, while mobility networks derived from Automatic Identification System data capture vessel flows and potential transfer pathways. Clustering and metric learning reveal climate analogues and enable the estimation of species survival likelihood along shipping routes. A temporal link prediction model captures how traffic patterns may change under shifting environmental conditions. The resulting fusion of environmental similarity and predicted mobility provides exposure estimates at the port and voyage levels, supporting targeted monitoring, routing adjustments, and management interventions.

Active transfer learning for structural health monitoring

Data for training structural health monitoring (SHM) systems are often expensive and/or impractical to obtain, particularly for labelled data. Population-based SHM (PBSHM) aims to address this limitation by leveraging data from multiple structures. However, data from different structures will follow distinct distributions, potentially leading to large generalisation errors for models learnt via conventional machine learning methods. To address this issue, transfer learning -- in the form of domain adaptation (DA) -- can be used to align the data distributions. Most previous approaches have only considered \emph{unsupervised} DA, where no labelled target data are available; they do not consider how to incorporate these technologies in an online framework -- updating as labels are obtained throughout the monitoring campaign. This paper proposes a Bayesian framework for DA in PBSHM, that can improve unsupervised DA mappings using a limited quantity of labelled target data. In addition, this model is integrated into an active sampling strategy to guide inspections to select the most informative observations to label -- leading to further reductions in the required labelled data to learn a target classifier. The effectiveness of this methodology is evaluated on a population of experimental bridges. Specifically, this population includes data corresponding to several damage states, as well as, a comprehensive set of environmental conditions. It is found that combining transfer learning and active learning can improve data efficiency when learning classification models in label-scarce scenarios. This result has implications for data-informed operation and maintenance of structures, suggesting a reduction in inspections over the operational lifetime of a structure -- and therefore a reduction in operational costs -- can be achieved.

Soft Task-Aware Routing of Experts for Equivariant Representation Learning

Equivariant representation learning aims to capture variations induced by input transformations in the representation space, whereas invariant representation learning encodes semantic information by disregarding such transformations. Recent studies have shown that jointly learning both types of representations is often beneficial for downstream tasks, typically by employing separate projection heads. However, this design overlooks information shared between invariant and equivariant learning, which leads to redundant feature learning and inefficient use of model capacity. To address this, we introduce Soft Task-Aware Routing (STAR), a routing strategy for projection heads that models them as experts. STAR induces the experts to specialize in capturing either shared or task-specific information, thereby reducing redundant feature learning. We validate this effect by observing lower canonical correlations between invariant and equivariant embeddings. Experimental results show consistent improvements across diverse transfer learning tasks. The code is available at https://github.com/YonseiML/star.

A Three-Stage Bayesian Transfer Learning Framework to Improve Predictions in Data-Scarce Domains

The use of ML in engineering has grown steadily to support a wide array of applications. Among these methods, deep neural networks have been widely adopted due to their performance and accessibility, but they require large, high-quality datasets. Experimental data are often sparse, noisy, or insufficient to build resilient data-driven models. Transfer learning, which leverages relevant data-abundant source domains to assist learning in data-scarce target domains, has shown efficacy. Parameter transfer, where pretrained weights are reused, is common but degrades under large domain shifts. Domain-adversarial neural networks (DANNs) help address this issue by learning domain-invariant representations, thereby improving transfer under greater domain shifts in a semi-supervised setting. However, DANNs can be unstable during training and lack a native means for uncertainty quantification. This study introduces a fully-supervised three-stage framework, the staged Bayesian domain-adversarial neural network (staged B-DANN), that combines parameter transfer and shared latent space adaptation. In Stage 1, a deterministic feature extractor is trained on the source domain. This feature extractor is then adversarially refined using a DANN in Stage 2. In Stage 3, a Bayesian neural network is built on the adapted feature extractor for fine-tuning on the target domain to handle conditional shifts and yield calibrated uncertainty estimates. This staged B-DANN approach was first validated on a synthetic benchmark, where it was shown to significantly outperform standard transfer techniques. It was then applied to the task of predicting critical heat flux in rectangular channels, leveraging data from tube experiments as the source domain. The results of this study show that the staged B-DANN method can improve predictive accuracy and generalization, potentially assisting other domains in nuclear engineering.

Analysis of the Robustness of an Edge Detector Based on Cellular Automata Optimized by Particle Swarm

The edge detection task is essential in image processing aiming to extract relevant information from an image. One recurring problem in this task is the weaknesses found in some detectors, such as the difficulty in detecting loose edges and the lack of context to extract relevant information from specific problems. To address these weaknesses and adapt the detector to the properties of an image, an adaptable detector described by two-dimensional cellular automaton and optimized by meta-heuristic combined with transfer learning techniques was developed. This study aims to analyze the impact of expanding the search space of the optimization phase and the robustness of the adaptability of the detector in identifying edges of a set of natural images and specialized subsets extracted from the same image set. The results obtained prove that expanding the search space of the optimization phase was not effective for the chosen image set. The study also analyzed the adaptability of the model through a series of experiments and validation techniques and found that, regardless of the validation, the model was able to adapt to the input and the transfer learning techniques applied to the model showed no significant improvements.

Adaptive Defense against Harmful Fine-Tuning for Large Language Models via Bayesian Data Scheduler

Harmful fine-tuning poses critical safety risks to fine-tuning-as-a-service for large language models. Existing defense strategies preemptively build robustness via attack simulation but suffer from fundamental limitations: (i) the infeasibility of extending attack simulations beyond bounded threat models due to the inherent difficulty of anticipating unknown attacks, and (ii) limited adaptability to varying attack settings, as simulation fails to capture their variability and complexity. To address these challenges, we propose Bayesian Data Scheduler (BDS), an adaptive tuning-stage defense strategy with no need for attack simulation. BDS formulates harmful fine-tuning defense as a Bayesian inference problem, learning the posterior distribution of each data point's safety attribute, conditioned on the fine-tuning and alignment datasets. The fine-tuning process is then constrained by weighting data with their safety attributes sampled from the posterior, thus mitigating the influence of harmful data. By leveraging the post hoc nature of Bayesian inference, the posterior is conditioned on the fine-tuning dataset, enabling BDS to tailor its defense to the specific dataset, thereby achieving adaptive defense. Furthermore, we introduce a neural scheduler based on amortized Bayesian learning, enabling efficient transfer to new data without retraining. Comprehensive results across diverse attack and defense settings demonstrate the state-of-the-art performance of our approach. Code is available at https://github.com/Egg-Hu/Bayesian-Data-Scheduler.

Accelerating Radiative Transfer for Planetary Atmospheres by Orders of Magnitude with a Transformer-Based Machine Learning Model

Radiative transfer calculations are essential for modeling planetary atmospheres. However, standard methods are computationally demanding and impose accuracy-speed trade-offs. High computational costs force numerical simplifications in large models (e.g., General Circulation Models) that degrade the accuracy of the simulation. Radiative transfer calculations are an ideal candidate for machine learning emulation: fundamentally, it is a well-defined physical mapping from a static atmospheric profile to the resulting fluxes, and high-fidelity training data can be created from first principles calculations. We developed a radiative transfer emulator using an encoder-only transformer neural network architecture, trained on 1D profiles representative of solar-composition hot Jupiter atmospheres. Our emulator reproduced bolometric two-stream layer fluxes with mean test set errors of ~1% compared to the traditional method and achieved speedups of 100x. Emulating radiative transfer with machine learning opens up the possibility for faster and more accurate routines within planetary atmospheric models such as GCMs.

GeoPep: A geometry-aware masked language model for protein-peptide binding site prediction

Multimodal approaches that integrate protein structure and sequence have achieved remarkable success in protein-protein interface prediction. However, extending these methods to protein-peptide interactions remains challenging due to the inherent conformational flexibility of peptides and the limited availability of structural data that hinder direct training of structure-aware models. To address these limitations, we introduce GeoPep, a novel framework for peptide binding site prediction that leverages transfer learning from ESM3, a multimodal protein foundation model. GeoPep fine-tunes ESM3's rich pre-learned representations from protein-protein binding to address the limited availability of protein-peptide binding data. The fine-tuned model is further integrated with a parameter-efficient neural network architecture capable of learning complex patterns from sparse data. Furthermore, the model is trained using distance-based loss functions that exploit 3D structural information to enhance binding site prediction. Comprehensive evaluations demonstrate that GeoPep significantly outperforms existing methods in protein-peptide binding site prediction by effectively capturing sparse and heterogeneous binding patterns.

Morphology-Aware Graph Reinforcement Learning for Tensegrity Robot Locomotion

Tensegrity robots combine rigid rods and elastic cables, offering high resilience and deployability but posing major challenges for locomotion control due to their underactuated and highly coupled dynamics. This paper introduces a morphology-aware reinforcement learning framework that integrates a graph neural network (GNN) into the Soft Actor-Critic (SAC) algorithm. By representing the robot's physical topology as a graph, the proposed GNN-based policy captures coupling among components, enabling faster and more stable learning than conventional multilayer perceptron (MLP) policies. The method is validated on a physical 3-bar tensegrity robot across three locomotion primitives, including straight-line tracking and bidirectional turning. It shows superior sample efficiency, robustness to noise and stiffness variations, and improved trajectory accuracy. Notably, the learned policies transfer directly from simulation to hardware without fine-tuning, achieving stable real-world locomotion. These results demonstrate the advantages of incorporating structural priors into reinforcement learning for tensegrity robot control.

Functional embeddings enable Aggregation of multi-area SEEG recordings over subjects and sessions

Aggregating intracranial recordings across subjects is challenging since electrode count, placement, and covered regions vary widely. Spatial normalization methods like MNI coordinates offer a shared anatomical reference, but often fail to capture true functional similarity, particularly when localization is imprecise; even at matched anatomical coordinates, the targeted brain region and underlying neural dynamics can differ substantially between individuals. We propose a scalable representation-learning framework that (i) learns a subject-agnostic functional identity for each electrode from multi-region local field potentials using a Siamese encoder with contrastive objectives, inducing an embedding geometry that is locality-sensitive to region-specific neural signatures, and (ii) tokenizes these embeddings for a transformer that models inter-regional relationships with a variable number of channels. We evaluate this framework on a 20-subject dataset spanning basal ganglia-thalamic regions collected during flexible rest/movement recording sessions with heterogeneous electrode layouts. The learned functional space supports accurate within-subject discrimination and forms clear, region-consistent clusters; it transfers zero-shot to unseen channels. The transformer, operating on functional tokens without subject-specific heads or supervision, captures cross-region dependencies and enables reconstruction of masked channels, providing a subject-agnostic backbone for downstream decoding. Together, these results indicate a path toward large-scale, cross-subject aggregation and pretraining for intracranial neural data where strict task structure and uniform sensor placement are unavailable.