Taking a Respite from Representation Learning for Molecular Property Prediction

Artificial intelligence (AI) has been widely applied in drug discovery with a major task as molecular property prediction. Despite the boom of AI techniques in molecular representation learning, some key aspects underlying molecular property prediction haven't been carefully examined yet. In this study, we conducted a systematic comparison on three representative models, random forest, MolBERT and GROVER, which utilize three major molecular representations, extended-connectivity fingerprints, SMILES strings and molecular graphs, respectively. Notably, MolBERT and GROVER, are pretrained on large-scale unlabelled molecule corpuses in a self-supervised manner. In addition to the commonly used MoleculeNet benchmark datasets, we also assembled a suite of opioids-related datasets for downstream prediction evaluation. We first conducted dataset profiling on label distribution and structural analyses; we also examined the activity cliffs issue in the opioids-related datasets. Then, we trained 4,320 predictive models and evaluated the usefulness of the learned representations. Furthermore, we explored into the model evaluation by studying the effect of statistical tests, evaluation metrics and task settings. Finally, we dissected the chemical space generalization into inter-scaffold and intra-scaffold generalization and measured prediction performance to evaluate model generalizbility under both settings. By taking this respite, we reflected on the key aspects underlying molecular property prediction, the awareness of which can, hopefully, bring better AI techniques in this field.

Target-absent Human Attention

The prediction of human gaze behavior is important for building human-computer interactive systems that can anticipate a user's attention. Computer vision models have been developed to predict the fixations made by people as they search for target objects. But what about when the image has no target? Equally important is to know how people search when they cannot find a target, and when they would stop searching. In this paper, we propose the first data-driven computational model that addresses the search-termination problem and predicts the scanpath of search fixations made by people searching for targets that do not appear in images. We model visual search as an imitation learning problem and represent the internal knowledge that the viewer acquires through fixations using a novel state representation that we call Foveated Feature Maps (FFMs). FFMs integrate a simulated foveated retina into a pretrained ConvNet that produces an in-network feature pyramid, all with minimal computational overhead. Our method integrates FFMs as the state representation in inverse reinforcement learning. Experimentally, we improve the state of the art in predicting human target-absent search behavior on the COCO-Search18 dataset

Vision-Language Pre-Training for Boosting Scene Text Detectors

Recently, vision-language joint representation learning has proven to be highly effective in various scenarios. In this paper, we specifically adapt vision-language joint learning for scene text detection, a task that intrinsically involves cross-modal interaction between the two modalities: vision and language, since text is the written form of language. Concretely, we propose to learn contextualized, joint representations through vision-language pre-training, for the sake of enhancing the performance of scene text detectors. Towards this end, we devise a pre-training architecture with an image encoder, a text encoder and a cross-modal encoder, as well as three pretext tasks: image-text contrastive learning (ITC), masked language modeling (MLM) and word-in-image prediction (WIP). The pre-trained model is able to produce more informative representations with richer semantics, which could readily benefit existing scene text detectors (such as EAST and PSENet) in the down-stream text detection task. Extensive experiments on standard benchmarks demonstrate that the proposed paradigm can significantly improve the performance of various representative text detectors, outperforming previous pre-training approaches. The code and pre-trained models will be publicly released.

Revisiting Document Image Dewarping by Grid Regularization

This paper addresses the problem of document image dewarping, which aims at eliminating the geometric distortion in document images for document digitization. Instead of designing a better neural network to approximate the optical flow fields between the inputs and outputs, we pursue the best readability by taking the text lines and the document boundaries into account from a constrained optimization perspective. Specifically, our proposed method first learns the boundary points and the pixels in the text lines and then follows the most simple observation that the boundaries and text lines in both horizontal and vertical directions should be kept after dewarping to introduce a novel grid regularization scheme. To obtain the final forward mapping for dewarping, we solve an optimization problem with our proposed grid regularization. The experiments comprehensively demonstrate that our proposed approach outperforms the prior arts by large margins in terms of readability (with the metrics of Character Errors Rate and the Edit Distance) while maintaining the best image quality on the publicly-available DocUNet benchmark.

ARTS: Eliminating Inconsistency between Text Detection and Recognition with Auto-Rectification Text Spotter

Recent approaches for end-to-end text spotting have achieved promising results. However, most of the current spotters were plagued by the inconsistency problem between text detection and recognition. In this work, we introduce and prove the existence of the inconsistency problem and analyze it from two aspects: (1) inconsistency of text recognition features between training and testing, and (2) inconsistency of optimization targets between text detection and recognition. To solve the aforementioned issues, we propose a differentiable Auto-Rectification Module (ARM) together with a new training strategy to enable propagating recognition loss back into detection branch, so that our detection branch can be jointly optimized by detection and recognition targets, which largely alleviates the inconsistency problem between text detection and recognition. Based on these designs, we present a simple yet robust end-to-end text spotting framework, termed Auto-Rectification Text Spotter (ARTS), to detect and recognize arbitrarily-shaped text in natural scenes. Extensive experiments demonstrate the superiority of our method. In particular, our ARTS-S achieves 77.1% end-to-end text spotting F-measure on Total-Text at a competitive speed of 10.5 FPS, which significantly outperforms previous methods in both accuracy and inference speed.

Parsing Table Structures in the Wild

This paper tackles the problem of table structure parsing (TSP) from images in the wild. In contrast to existing studies that mainly focus on parsing well-aligned tabular images with simple layouts from scanned PDF documents, we aim to establish a practical table structure parsing system for real-world scenarios where tabular input images are taken or scanned with severe deformation, bending or occlusions. For designing such a system, we propose an approach named Cycle-CenterNet on the top of CenterNet with a novel cycle-pairing module to simultaneously detect and group tabular cells into structured tables. In the cycle-pairing module, a new pairing loss function is proposed for the network training. Alongside with our Cycle-CenterNet, we also present a large-scale dataset, named Wired Table in the Wild (WTW), which includes well-annotated structure parsing of multiple style tables in several scenes like the photo, scanning files, web pages, \emph{etc.}. In experiments, we demonstrate that our Cycle-CenterNet consistently achieves the best accuracy of table structure parsing on the new WTW dataset by 24.6\% absolute improvement evaluated by the TEDS metric. A more comprehensive experimental analysis also validates the advantages of our proposed methods for the TSP task.

Artificial Intelligence in Drug Discovery: Applications and Techniques

Artificial intelligence (AI) has been transforming the practice of drug discovery in the past decade. Various AI techniques have been used in a wide range of applications, such as virtual screening and drug design. In this perspective, we first give an overview on drug discovery and discuss related applications, which can be reduced to two major tasks, i.e., molecular property prediction and molecule generation. We then discuss common data resources, molecule representations and benchmark platforms. Furthermore, to summarize the progress in AI-driven drug discovery, we present the relevant AI techniques including model architectures and learning paradigms in the surveyed papers. We expect that the perspective will serve as a guide for researchers who are interested in working at this intersected area of artificial intelligence and drug discovery. We also provide a GitHub repository\footnote{\url{https://github.com/dengjianyuan/Survey_AI_Drug_Discovery}} with the collection of papers and codes, if applicable, as a learning resource, which will be regularly updated.

Artificial Intelligence in Drug Discovery:Applications and Techniques

Artificial intelligence has transformed the practice of drug discovery in the past decade. Various artificial intelligence techniques have been used in a wide range of applications. In this perspective, we present major applications of AI in drug discovery and discuss the relevant AI techniques, covering most recent progress in AI-driven drug discovery. We expect that the perspective will serve as a guide for researchers who are interested in working at this intersected area of artificial intelligence and drug discovery. We also provide a GitHub repository summarizing the surveyed papers as a learning resource, which will be regularly updated.

PAN++: Towards Efficient and Accurate End-to-End Spotting of Arbitrarily-Shaped Text

Scene text detection and recognition have been well explored in the past few years. Despite the progress, efficient and accurate end-to-end spotting of arbitrarily-shaped text remains challenging. In this work, we propose an end-to-end text spotting framework, termed PAN++, which can efficiently detect and recognize text of arbitrary shapes in natural scenes. PAN++ is based on the kernel representation that reformulates a text line as a text kernel (central region) surrounded by peripheral pixels. By systematically comparing with existing scene text representations, we show that our kernel representation can not only describe arbitrarily-shaped text but also well distinguish adjacent text. Moreover, as a pixel-based representation, the kernel representation can be predicted by a single fully convolutional network, which is very friendly to real-time applications. Taking the advantages of the kernel representation, we design a series of components as follows: 1) a computationally efficient feature enhancement network composed of stacked Feature Pyramid Enhancement Modules (FPEMs); 2) a lightweight detection head cooperating with Pixel Aggregation (PA); and 3) an efficient attention-based recognition head with Masked RoI. Benefiting from the kernel representation and the tailored components, our method achieves high inference speed while maintaining competitive accuracy. Extensive experiments show the superiority of our method. For example, the proposed PAN++ achieves an end-to-end text spotting F-measure of 64.9 at 29.2 FPS on the Total-Text dataset, which significantly outperforms the previous best method. Code will be available at: https://git.io/PAN.