Image-to-image Mapping with Many Domains by Sparse Attribute Transfer

Unsupervised image-to-image translation consists of learning a pair of mappings between two domains without known pairwise correspondences between points. The current convention is to approach this task with cycle-consistent GANs: using a discriminator to encourage the generator to change the image to match the target domain, while training the generator to be inverted with another mapping. While ending up with paired inverse functions may be a good end result, enforcing this restriction at all times during training can be a hindrance to effective modeling. We propose an alternate approach that directly restricts the generator to performing a simple sparse transformation in a latent layer, motivated by recent work from cognitive neuroscience suggesting an architectural prior on representations corresponding to consciousness. Our biologically motivated approach leads to representations more amenable to transformation by disentangling high-level abstract concepts in the latent space. We demonstrate that image-to-image domain translation with many different domains can be learned more effectively with our architecturally constrained, simple transformation than with previous unconstrained architectures that rely on a cycle-consistency loss.

HNHN: Hypergraph Networks with Hyperedge Neurons

Hypergraphs provide a natural representation for many real world datasets. We propose a novel framework, HNHN, for hypergraph representation learning. HNHN is a hypergraph convolution network with nonlinear activation functions applied to both hypernodes and hyperedges, combined with a normalization scheme that can flexibly adjust the importance of high-cardinality hyperedges and high-degree vertices depending on the dataset. We demonstrate improved performance of HNHN in both classification accuracy and speed on real world datasets when compared to state of the art methods.

Untangling tradeoffs between recurrence and self-attention in neural networks

Attention and self-attention mechanisms, inspired by cognitive processes, are now central to state-of-the-art deep learning on sequential tasks. However, most recent progress hinges on heuristic approaches with limited understanding of attention's role in model optimization and computation, and rely on considerable memory and computational resources that scale poorly. In this work, we present a formal analysis of how self-attention affects gradient propagation in recurrent networks, and prove that it mitigates the problem of vanishing gradients when trying to capture long-term dependencies. Building on these results, we propose a relevancy screening mechanism, inspired by the cognitive process of memory consolidation, that allows for a scalable use of sparse self-attention with recurrence. While providing guarantees to avoid vanishing gradients, we use simple numerical experiments to demonstrate the tradeoffs in performance and computational resources by efficiently balancing attention and recurrence. Based on our results, we propose a concrete direction of research to improve scalability of attentive networks.

Learning Causal Models Online

Predictive models -- learned from observational data not covering the complete data distribution -- can rely on spurious correlations in the data for making predictions. These correlations make the models brittle and hinder generalization. One solution for achieving strong generalization is to incorporate causal structures in the models; such structures constrain learning by ignoring correlations that contradict them. However, learning these structures is a hard problem in itself. Moreover, it's not clear how to incorporate the machinery of causality with online continual learning. In this work, we take an indirect approach to discovering causal models. Instead of searching for the true causal model directly, we propose an online algorithm that continually detects and removes spurious features. Our algorithm works on the idea that the correlation of a spurious feature with a target is not constant over-time. As a result, the weight associated with that feature is constantly changing. We show that by continually removing such features, our method converges to solutions that have strong generalization. Moreover, our method combined with random search can also discover non-spurious features from raw sensory data. Finally, our work highlights that the information present in the temporal structure of the problem -- destroyed by shuffling the data -- is essential for detecting spurious features online.

Training End-to-End Analog Neural Networks with Equilibrium Propagation

We introduce a principled method to train end-to-end analog neural networks by stochastic gradient descent. In these analog neural networks, the weights to be adjusted are implemented by the conductances of programmable resistive devices such as memristors [Chua, 1971], and the nonlinear transfer functions (or `activation functions') are implemented by nonlinear components such as diodes. We show mathematically that a class of analog neural networks (called nonlinear resistive networks) are energy-based models: they possess an energy function as a consequence of Kirchhoff's laws governing electrical circuits. This property enables us to train them using the Equilibrium Propagation framework [Scellier and Bengio, 2017]. Our update rule for each conductance, which is local and relies solely on the voltage drop across the corresponding resistor, is shown to compute the gradient of the loss function. Our numerical simulations, which use the SPICE-based Spectre simulation framework to simulate the dynamics of electrical circuits, demonstrate training on the MNIST classification task, performing comparably or better than equivalent-size software-based neural networks. Our work can guide the development of a new generation of ultra-fast, compact and low-power neural networks supporting on-chip learning.

Predicting COVID-19 Pneumonia Severity on Chest X-ray with Deep Learning

The need to streamline patient management for COVID-19 has become more pressing than ever. Chest X-rays provide a non-invasive (potentially bedside) tool to monitor the progression of the disease. In this study, we present a severity score prediction model for COVID-19 pneumonia for frontal chest X-ray images. Such a tool can gauge severity of COVID-19 lung infections (and pneumonia in general) that can be used for escalation or de-escalation of care as well as monitoring treatment efficacy, especially in the ICU. Images from a public COVID-19 database were scored retrospectively by three blinded experts in terms of the extent of lung involvement as well as the degree of opacity. A neural network model that was pre-trained on large (non-COVID-19) chest X-ray datasets is used to construct features for COVID-19 images which are predictive for our task. This study finds that training a regression model on a subset of the outputs from an this pre-trained chest X-ray model predicts our geographic extent score (range 0-8) with 1.14 mean absolute error (MAE) and our lung opacity score (range 0-6) with 0.78 MAE. All code, labels, and data are made available at https://github.com/mlmed/torchxrayvision and https://github.com/ieee8023/covid-chestxray-dataset

Learning To Navigate The Synthetically Accessible Chemical Space Using Reinforcement Learning

Over the last decade, there has been significant progress in the field of machine learning for de novo drug design, particularly in deep generative models. However, current generative approaches exhibit a significant challenge as they do not ensure that the proposed molecular structures can be feasibly synthesized nor do they provide the synthesis routes of the proposed small molecules, thereby seriously limiting their practical applicability. In this work, we propose a novel forward synthesis framework powered by reinforcement learning (RL) for de novo drug design, Policy Gradient for Forward Synthesis (PGFS), that addresses this challenge by embedding the concept of synthetic accessibility directly into the de novo drug design system. In this setup, the agent learns to navigate through the immense synthetically accessible chemical space by subjecting commercially available small molecule building blocks to valid chemical reactions at every time step of the iterative virtual multi-step synthesis process. The proposed environment for drug discovery provides a highly challenging test-bed for RL algorithms owing to the large state space and high-dimensional continuous action space with hierarchical actions. PGFS achieves state-of-the-art performance in generating structures with high QED and penalized clogP. Moreover, we validate PGFS in an in-silico proof-of-concept associated with three HIV targets. Finally, we describe how the end-to-end training conceptualized in this study represents an important paradigm in radically expanding the synthesizable chemical space and automating the drug discovery process.

An Analysis of the Adaptation Speed of Causal Models

We consider the problem of discovering the causal process that generated a collection of datasets. We assume that all these datasets were generated by unknown sparse interventions on a structural causal model (SCM) $G$, that we want to identify. Recently, Bengio et al. (2020) argued that among all SCMs, $G$ is the fastest to adapt from one dataset to another, and proposed a meta-learning criterion to identify the causal direction in a two-variable SCM. While the experiments were promising, the theoretical justification was incomplete. Our contribution is a theoretical investigation of the adaptation speed of simple two-variable SCMs. We use convergence rates from stochastic optimization to justify that a relevant proxy for adaptation speed is distance in parameter space after intervention. Using this proxy, we show that the SCM with the correct causal direction is advantaged for categorical and normal cause-effect datasets when the intervention is on the cause variable. When the intervention is on the effect variable, we provide a more nuanced picture which highlights that the fastest-to-adapt heuristic is not always valid. Code to reproduce experiments is available at https://github.com/remilepriol/causal-adaptation-speed

COVI White Paper

The SARS-CoV-2 (Covid-19) pandemic has caused significant strain on public health institutions around the world. Contact tracing is an essential tool to change the course of the Covid-19 pandemic. Manual contact tracing of Covid-19 cases has significant challenges that limit the ability of public health authorities to minimize community infections. Personalized peer-to-peer contact tracing through the use of mobile apps has the potential to shift the paradigm. Some countries have deployed centralized tracking systems, but more privacy-protecting decentralized systems offer much of the same benefit without concentrating data in the hands of a state authority or for-profit corporations. Machine learning methods can circumvent some of the limitations of standard digital tracing by incorporating many clues and their uncertainty into a more graded and precise estimation of infection risk. The estimated risk can provide early risk awareness, personalized recommendations and relevant information to the user. Finally, non-identifying risk data can inform epidemiological models trained jointly with the machine learning predictor. These models can provide statistical evidence for the importance of factors involved in disease transmission. They can also be used to monitor, evaluate and optimize health policy and (de)confinement scenarios according to medical and economic productivity indicators. However, such a strategy based on mobile apps and machine learning should proactively mitigate potential ethical and privacy risks, which could have substantial impacts on society (not only impacts on health but also impacts such as stigmatization and abuse of personal data). Here, we present an overview of the rationale, design, ethical considerations and privacy strategy of `COVI,' a Covid-19 public peer-to-peer contact tracing and risk awareness mobile application developed in Canada.

Exploiting Syntactic Structure for Better Language Modeling: A Syntactic Distance Approach

It is commonly believed that knowledge of syntactic structure should improve language modeling. However, effectively and computationally efficiently incorporating syntactic structure into neural language models has been a challenging topic. In this paper, we make use of a multi-task objective, i.e., the models simultaneously predict words as well as ground truth parse trees in a form called "syntactic distances", where information between these two separate objectives shares the same intermediate representation. Experimental results on the Penn Treebank and Chinese Treebank datasets show that when ground truth parse trees are provided as additional training signals, the model is able to achieve lower perplexity and induce trees with better quality.