HGTDP-DTA: Hybrid Graph-Transformer with Dynamic Prompt for Drug-Target Binding Affinity Prediction

Drug target binding affinity (DTA) is a key criterion for drug screening. Existing experimental methods are time-consuming and rely on limited structural and domain information. While learning-based methods can model sequence and structural information, they struggle to integrate contextual data and often lack comprehensive modeling of drug-target interactions. In this study, we propose a novel DTA prediction method, termed HGTDP-DTA, which utilizes dynamic prompts within a hybrid Graph-Transformer framework. Our method generates context-specific prompts for each drug-target pair, enhancing the model's ability to capture unique interactions. The introduction of prompt tuning further optimizes the prediction process by filtering out irrelevant noise and emphasizing task-relevant information, dynamically adjusting the input features of the molecular graph. The proposed hybrid Graph-Transformer architecture combines structural information from Graph Convolutional Networks (GCNs) with sequence information captured by Transformers, facilitating the interaction between global and local information. Additionally, we adopted the multi-view feature fusion method to project molecular graph views and affinity subgraph views into a common feature space, effectively combining structural and contextual information. Experiments on two widely used public datasets, Davis and KIBA, show that HGTDP-DTA outperforms state-of-the-art DTA prediction methods in both prediction performance and generalization ability.

Deep Learning Powered Estimate of The Extrinsic Parameters on Unmanned Surface Vehicles

Unmanned Surface Vehicles (USVs) are pivotal in marine exploration, but their sensors' accuracy is compromised by the dynamic marine environment. Traditional calibration methods fall short in these conditions. This paper introduces a deep learning architecture that predicts changes in the USV's dynamic metacenter and refines sensors' extrinsic parameters in real time using a Time-Sequence General Regression Neural Network (GRNN) with Euler angles as input. Simulation data from Unity3D ensures robust training and testing. Experimental results show that the Time-Sequence GRNN achieves the lowest mean squared error (MSE) loss, outperforming traditional neural networks. This method significantly enhances sensor calibration for USVs, promising improved data accuracy in challenging maritime conditions. Future work will refine the network and validate results with real-world data.

Cycle-YOLO: A Efficient and Robust Framework for Pavement Damage Detection

With the development of modern society, traffic volume continues to increase in most countries worldwide, leading to an increase in the rate of pavement damage Therefore, the real-time and highly accurate pavement damage detection and maintenance have become the current need. In this paper, an enhanced pavement damage detection method with CycleGAN and improved YOLOv5 algorithm is presented. We selected 7644 self-collected images of pavement damage samples as the initial dataset and augmented it by CycleGAN. Due to a substantial difference between the images generated by CycleGAN and real road images, we proposed a data enhancement method based on an improved Scharr filter, CycleGAN, and Laplacian pyramid. To improve the target recognition effect on a complex background and solve the problem that the spatial pyramid pooling-fast module in the YOLOv5 network cannot handle multiscale targets, we introduced the convolutional block attention module attention mechanism and proposed the atrous spatial pyramid pooling with squeeze-and-excitation structure. In addition, we optimized the loss function of YOLOv5 by replacing the CIoU with EIoU. The experimental results showed that our algorithm achieved a precision of 0.872, recall of 0.854, and mean average precision@0.5 of 0.882 in detecting three main types of pavement damage: cracks, potholes, and patching. On the GPU, its frames per second reached 68, meeting the requirements for real-time detection. Its overall performance even exceeded the current more advanced YOLOv7 and achieved good results in practical applications, providing a basis for decision-making in pavement damage detection and prevention.

Multi-dimension Transformer with Attention-based Filtering for Medical Image Segmentation

The accurate segmentation of medical images is crucial for diagnosing and treating diseases. Recent studies demonstrate that vision transformer-based methods have significantly improved performance in medical image segmentation, primarily due to their superior ability to establish global relationships among features and adaptability to various inputs. However, these methods struggle with the low signal-to-noise ratio inherent to medical images. Additionally, the effective utilization of channel and spatial information, which are essential for medical image segmentation, is limited by the representation capacity of self-attention. To address these challenges, we propose a multi-dimension transformer with attention-based filtering (MDT-AF), which redesigns the patch embedding and self-attention mechanism for medical image segmentation. MDT-AF incorporates an attention-based feature filtering mechanism into the patch embedding blocks and employs a coarse-to-fine process to mitigate the impact of low signal-to-noise ratio. To better capture complex structures in medical images, MDT-AF extends the self-attention mechanism to incorporate spatial and channel dimensions, enriching feature representation. Moreover, we introduce an interaction mechanism to improve the feature aggregation between spatial and channel dimensions. Experimental results on three public medical image segmentation benchmarks show that MDT-AF achieves state-of-the-art (SOTA) performance.

CosmicMan: A Text-to-Image Foundation Model for Humans

We present CosmicMan, a text-to-image foundation model specialized for generating high-fidelity human images. Unlike current general-purpose foundation models that are stuck in the dilemma of inferior quality and text-image misalignment for humans, CosmicMan enables generating photo-realistic human images with meticulous appearance, reasonable structure, and precise text-image alignment with detailed dense descriptions. At the heart of CosmicMan's success are the new reflections and perspectives on data and models: (1) We found that data quality and a scalable data production flow are essential for the final results from trained models. Hence, we propose a new data production paradigm, Annotate Anyone, which serves as a perpetual data flywheel to produce high-quality data with accurate yet cost-effective annotations over time. Based on this, we constructed a large-scale dataset, CosmicMan-HQ 1.0, with 6 Million high-quality real-world human images in a mean resolution of 1488x1255, and attached with precise text annotations deriving from 115 Million attributes in diverse granularities. (2) We argue that a text-to-image foundation model specialized for humans must be pragmatic -- easy to integrate into down-streaming tasks while effective in producing high-quality human images. Hence, we propose to model the relationship between dense text descriptions and image pixels in a decomposed manner, and present Decomposed-Attention-Refocusing (Daring) training framework. It seamlessly decomposes the cross-attention features in existing text-to-image diffusion model, and enforces attention refocusing without adding extra modules. Through Daring, we show that explicitly discretizing continuous text space into several basic groups that align with human body structure is the key to tackling the misalignment problem in a breeze.

A systematic investigation of learnability from single child linguistic input

Language models (LMs) have demonstrated remarkable proficiency in generating linguistically coherent text, sparking discussions about their relevance to understanding human language learnability. However, a significant gap exists between the training data for these models and the linguistic input a child receives. LMs are typically trained on data that is orders of magnitude larger and fundamentally different from child-directed speech (Warstadt and Bowman, 2022; Warstadt et al., 2023; Frank, 2023a). Addressing this discrepancy, our research focuses on training LMs on subsets of a single child's linguistic input. Previously, Wang, Vong, Kim, and Lake (2023) found that LMs trained in this setting can form syntactic and semantic word clusters and develop sensitivity to certain linguistic phenomena, but they only considered LSTMs and simpler neural networks trained from just one single-child dataset. Here, to examine the robustness of learnability from single-child input, we systematically train six different model architectures on five datasets (3 single-child and 2 baselines). We find that the models trained on single-child datasets showed consistent results that matched with previous work, underscoring the robustness of forming meaningful syntactic and semantic representations from a subset of a child's linguistic input.

Self-supervised learning of video representations from a child's perspective

Children learn powerful internal models of the world around them from a few years of egocentric visual experience. Can such internal models be learned from a child's visual experience with highly generic learning algorithms or do they require strong inductive biases? Recent advances in collecting large-scale, longitudinal, developmentally realistic video datasets and generic self-supervised learning (SSL) algorithms are allowing us to begin to tackle this nature vs. nurture question. However, existing work typically focuses on image-based SSL algorithms and visual capabilities that can be learned from static images (e.g. object recognition), thus ignoring temporal aspects of the world. To close this gap, here we train self-supervised video models on longitudinal, egocentric headcam recordings collected from a child over a two year period in their early development (6-31 months). The resulting models are highly effective at facilitating the learning of action concepts from a small number of labeled examples; they have favorable data size scaling properties; and they display emergent video interpolation capabilities. Video models also learn more robust object representations than image-based models trained with the exact same data. These results suggest that important temporal aspects of a child's internal model of the world may be learnable from their visual experience using highly generic learning algorithms and without strong inductive biases.

DeepArt: A Benchmark to Advance Fidelity Research in AI-Generated Content

This paper explores the image synthesis capabilities of GPT-4, a leading multi-modal large language model. We establish a benchmark for evaluating the fidelity of texture features in images generated by GPT-4, comprising manually painted pictures and their AI-generated counterparts. The contributions of this study are threefold: First, we provide an in-depth analysis of the fidelity of image synthesis features based on GPT-4, marking the first such study on this state-of-the-art model. Second, the quantitative and qualitative experiments fully reveals the limitations of the GPT-4 model in image synthesis. Third, we have compiled a unique benchmark of manual drawings and corresponding GPT-4-generated images, introducing a new task to advance fidelity research in AI-generated content (AIGC). The dataset is available at: \url{https://github.com/rickwang28574/DeepArt}.

PyPose v0.6: The Imperative Programming Interface for Robotics

PyPose is an open-source library for robot learning. It combines a learning-based approach with physics-based optimization, which enables seamless end-to-end robot learning. It has been used in many tasks due to its meticulously designed application programming interface (API) and efficient implementation. From its initial launch in early 2022, PyPose has experienced significant enhancements, incorporating a wide variety of new features into its platform. To satisfy the growing demand for understanding and utilizing the library and reduce the learning curve of new users, we present the fundamental design principle of the imperative programming interface, and showcase the flexible usage of diverse functionalities and modules using an extremely simple Dubins car example. We also demonstrate that the PyPose can be easily used to navigate a real quadruped robot with a few lines of code.

Toward Degree Bias in Embedding-Based Knowledge Graph Completion

A fundamental task for knowledge graphs (KGs) is knowledge graph completion (KGC). It aims to predict unseen edges by learning representations for all the entities and relations in a KG. A common concern when learning representations on traditional graphs is degree bias. It can affect graph algorithms by learning poor representations for lower-degree nodes, often leading to low performance on such nodes. However, there has been limited research on whether there exists degree bias for embedding-based KGC and how such bias affects the performance of KGC. In this paper, we validate the existence of degree bias in embedding-based KGC and identify the key factor to degree bias. We then introduce a novel data augmentation method, KG-Mixup, to generate synthetic triples to mitigate such bias. Extensive experiments have demonstrated that our method can improve various embedding-based KGC methods and outperform other methods tackling the bias problem on multiple benchmark datasets.