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Picture for Manuel Wiesenfarth

Manuel Wiesenfarth

Division of Biostatistics, German Cancer Research Center

Metrics reloaded: Pitfalls and recommendations for image analysis validation


Jun 03, 2022
Lena Maier-Hein , Annika Reinke , Evangelia Christodoulou , Ben Glocker , Patrick Godau , Fabian Isensee , Jens Kleesiek , Michal Kozubek , Mauricio Reyes , Michael A. Riegler , Manuel Wiesenfarth , Michael Baumgartner , Matthias Eisenmann , Doreen Heckmann-Nötzel , A. Emre Kavur , Tim Rädsch , Minu D. Tizabi , Laura Acion , Michela Antonelli , Tal Arbel , Spyridon Bakas , Peter Bankhead , Arriel Benis , M. Jorge Cardoso , Veronika Cheplygina , Beth Cimini , Gary S. Collins , Keyvan Farahani , Bram van Ginneken , Daniel A. Hashimoto , Michael M. Hoffman , Merel Huisman , Pierre Jannin , Charles E. Kahn , Alexandros Karargyris , Alan Karthikesalingam , Hannes Kenngott , Annette Kopp-Schneider , Anna Kreshuk , Tahsin Kurc , Bennett A. Landman , Geert Litjens , Amin Madani , Klaus Maier-Hein , Anne L. Martel , Peter Mattson , Erik Meijering , Bjoern Menze , David Moher , Karel G. M. Moons , Henning Müller , Felix Nickel , Brennan Nichyporuk , Jens Petersen , Nasir Rajpoot , Nicola Rieke , Julio Saez-Rodriguez , Clarisa Sánchez Gutiérrez , Shravya Shetty , Maarten van Smeden , Carole H. Sudre , Ronald M. Summers , Abdel A. Taha , Sotirios A. Tsaftaris , Ben Van Calster , Gaël Varoquaux , Paul F. Jäger

* Shared first authors: Lena Maier-Hein, Annika Reinke. arXiv admin note: substantial text overlap with arXiv:2104.05642 

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How can we learn (more) from challenges? A statistical approach to driving future algorithm development


Jun 17, 2021
Tobias Roß , Pierangela Bruno , Annika Reinke , Manuel Wiesenfarth , Lisa Koeppel , Peter M. Full , Bünyamin Pekdemir , Patrick Godau , Darya Trofimova , Fabian Isensee , Sara Moccia , Francesco Calimeri , Beat P. Müller-Stich , Annette Kopp-Schneider , Lena Maier-Hein


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Machine learning-based analysis of hyperspectral images for automated sepsis diagnosis


Jun 15, 2021
Maximilian Dietrich , Silvia Seidlitz , Nicholas Schreck , Manuel Wiesenfarth , Patrick Godau , Minu Tizabi , Jan Sellner , Sebastian Marx , Samuel Knödler , Michael M. Allers , Leonardo Ayala , Karsten Schmidt , Thorsten Brenner , Alexander Studier-Fischer , Felix Nickel , Beat P. Müller-Stich , Annette Kopp-Schneider , Markus A. Weigand , Lena Maier-Hein

* Maximilian Dietrich and Silvia Seidlitz contributed equally. Markus A. Weigand and Lena Maier-Hein contributed equally 

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The Medical Segmentation Decathlon


Jun 10, 2021
Michela Antonelli , Annika Reinke , Spyridon Bakas , Keyvan Farahani , AnnetteKopp-Schneider , Bennett A. Landman , Geert Litjens , Bjoern Menze , Olaf Ronneberger , Ronald M. Summers , Bram van Ginneken , Michel Bilello , Patrick Bilic , Patrick F. Christ , Richard K. G. Do , Marc J. Gollub , Stephan H. Heckers , Henkjan Huisman , William R. Jarnagin , Maureen K. McHugo , Sandy Napel , Jennifer S. Goli Pernicka , Kawal Rhode , Catalina Tobon-Gomez , Eugene Vorontsov , Henkjan Huisman , James A. Meakin , Sebastien Ourselin , Manuel Wiesenfarth , Pablo Arbelaez , Byeonguk Bae , Sihong Chen , Laura Daza , Jianjiang Feng , Baochun He , Fabian Isensee , Yuanfeng Ji , Fucang Jia , Namkug Kim , Ildoo Kim , Dorit Merhof , Akshay Pai , Beomhee Park , Mathias Perslev , Ramin Rezaiifar , Oliver Rippel , Ignacio Sarasua , Wei Shen , Jaemin Son , Christian Wachinger , Liansheng Wang , Yan Wang , Yingda Xia , Daguang Xu , Zhanwei Xu , Yefeng Zheng , Amber L. Simpson , Lena Maier-Hein , M. Jorge Cardoso


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Robust Medical Instrument Segmentation Challenge 2019


Mar 23, 2020
Tobias Ross , Annika Reinke , Peter M. Full , Martin Wagner , Hannes Kenngott , Martin Apitz , Hellena Hempe , Diana Mindroc Filimon , Patrick Scholz , Thuy Nuong Tran , Pierangela Bruno , Pablo Arbeláez , Gui-Bin Bian , Sebastian Bodenstedt , Jon Lindström Bolmgren , Laura Bravo-Sánchez , Hua-Bin Chen , Cristina González , Dong Guo , Pål Halvorsen , Pheng-Ann Heng , Enes Hosgor , Zeng-Guang Hou , Fabian Isensee , Debesh Jha , Tingting Jiang , Yueming Jin , Kadir Kirtac , Sabrina Kletz , Stefan Leger , Zhixuan Li , Klaus H. Maier-Hein , Zhen-Liang Ni , Michael A. Riegler , Klaus Schoeffmann , Ruohua Shi , Stefanie Speidel , Michael Stenzel , Isabell Twick , Gutai Wang , Jiacheng Wang , Liansheng Wang , Lu Wang , Yujie Zhang , Yan-Jie Zhou , Lei Zhu , Manuel Wiesenfarth , Annette Kopp-Schneider , Beat P. Müller-Stich , Lena Maier-Hein

* A pre-print 

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Methods and open-source toolkit for analyzing and visualizing challenge results


Oct 11, 2019
Manuel Wiesenfarth , Annika Reinke , Bennett A. Landman , Manuel Jorge Cardoso , Lena Maier-Hein , Annette Kopp-Schneider


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Exploiting the potential of unlabeled endoscopic video data with self-supervised learning


Jan 31, 2018
Tobias Ross , David Zimmerer , Anant Vemuri , Fabian Isensee , Manuel Wiesenfarth , Sebastian Bodenstedt , Fabian Both , Philip Kessler , Martin Wagner , Beat Müller , Hannes Kenngott , Stefanie Speidel , Annette Kopp-Schneider , Klaus Maier-Hein , Lena Maier-Hein


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