AMix-2: Establishing Protein as a Native Modality in Large Language Models

We present AMix-2, a protein-text foundation model that establishes protein as a native modality in large language models (LLMs), unifying protein understanding and sequence design within a single foundation model. AMix-2 is built upon two key ideas: (1) a unified protein-text formulation that embeds natural language and protein sequence in a shared token space, enabling one model to perform biological reasoning and conditional design instead of separate downstream task-specialized models; and (2) a block-wise diffusion language modeling backbone that combines causal generation across blocks with bidirectional context and iterative refinement within blocks. This scheme better matches the intrinsic nature of proteins than a strict left-to-right factorization. To evaluate protein foundation models under realistic generalization settings, we further introduce ProteinArena, a comprehensive benchmark with time-aware and homology-aware protocols across various understanding and design tasks, and with baselines covering classical bioinformatics tools, protein-specialized models and LLMs. On ProteinArena, AMix-2 outperforms frontier LLMs and demonstrates competitive performance to task-specific protein models. Controlled experiments further show that the diffusion-based paradigm generally surpasses its autoregressive counterpart, highlighting the advantage of flexible generation order for protein sequences. We release both AMix-2 and ProteinArena to facilitate open research in protein foundation models.

MemAgent: Reshaping Long-Context LLM with Multi-Conv RL-based Memory Agent

Despite improvements by length extrapolation, efficient attention and memory modules, handling infinitely long documents with linear complexity without performance degradation during extrapolation remains the ultimate challenge in long-text processing. We directly optimize for long-text tasks in an end-to-end fashion and introduce a novel agent workflow, MemAgent, which reads text in segments and updates the memory using an overwrite strategy. We extend the DAPO algorithm to facilitate training via independent-context multi-conversation generation. MemAgent has demonstrated superb long-context capabilities, being able to extrapolate from an 8K context trained on 32K text to a 3.5M QA task with performance loss < 5% and achieves 95%+ in 512K RULER test.

BjTT: A Large-scale Multimodal Dataset for Traffic Prediction

Traffic prediction is one of the most significant foundations in Intelligent Transportation Systems (ITS). Traditional traffic prediction methods rely only on historical traffic data to predict traffic trends and face two main challenges. 1) insensitivity to unusual events. 2) limited performance in long-term prediction. In this work, we explore how generative models combined with text describing the traffic system can be applied for traffic generation, and name the task Text-to-Traffic Generation (TTG). The key challenge of the TTG task is how to associate text with the spatial structure of the road network and traffic data for generating traffic situations. To this end, we propose ChatTraffic, the first diffusion model for text-to-traffic generation. To guarantee the consistency between synthetic and real data, we augment a diffusion model with the Graph Convolutional Network (GCN) to extract spatial correlations of traffic data. In addition, we construct a large dataset containing text-traffic pairs for the TTG task. We benchmarked our model qualitatively and quantitatively on the released dataset. The experimental results indicate that ChatTraffic can generate realistic traffic situations from the text. Our code and dataset are available at https://github.com/ChyaZhang/ChatTraffic.

Linear Attention via Orthogonal Memory

Efficient attentions have greatly improved the computational efficiency of Transformers. However, most existing linear attention mechanisms suffer from an \emph{efficiency degradation} problem, leading to inefficiencies in causal language modeling and hindering their application in long-range language models. This problem is more pronounced under language modeling with unbounded contexts. In this paper, we propose \textbf{L}inear \textbf{A}ttention \textbf{V}ia \textbf{O}rthogonal memory~(\shortname) to address these limitations, achieving strong performance while maintaining linear complexity. \shortname employs orthogonal decomposition to compress a context into a fixed-size orthogonal memory while effectively minimizing redundancy within the context. Given that orthogonal memory compresses global information, we further dissect the context to amplify fine-grained local information. Additionally, we embed the relative position encoding into \shortname to improve the extrapolation ability. Experimental results show that \shortname greatly improves the efficiency of the causal language model with the best extrapolation performance and outperforms other efficient baselines. Further, we endeavor to employ \shortname for unbounded language modeling and successfully scale the context length to 128K.

DiffuSeq-v2: Bridging Discrete and Continuous Text Spaces for Accelerated Seq2Seq Diffusion Models

Diffusion models have gained prominence in generating high-quality sequences of text. Nevertheless, current approaches predominantly represent discrete text within a continuous diffusion space, which incurs substantial computational overhead during training and results in slower sampling speeds. In this paper, we introduce a soft absorbing state that facilitates the diffusion model in learning to reconstruct discrete mutations based on the underlying Gaussian space, thereby enhancing its capacity to recover conditional signals. During the sampling phase, we employ state-of-the-art ODE solvers within the continuous space to expedite the sampling process. Comprehensive experimental evaluations reveal that our proposed method effectively accelerates the training convergence by 4x and generates samples of similar quality 800x faster, rendering it significantly closer to practical application. \footnote{The code is released at \url{https://github.com/Shark-NLP/DiffuSeq}

Attentive Multi-Layer Perceptron for Non-autoregressive Generation

Autoregressive~(AR) generation almost dominates sequence generation for its efficacy. Recently, non-autoregressive~(NAR) generation gains increasing popularity for its efficiency and growing efficacy. However, its efficiency is still bottlenecked by quadratic complexity in sequence lengths, which is prohibitive for scaling to long sequence generation and few works have been done to mitigate this problem. In this paper, we propose a novel MLP variant, \textbf{A}ttentive \textbf{M}ulti-\textbf{L}ayer \textbf{P}erceptron~(AMLP), to produce a generation model with linear time and space complexity. Different from classic MLP with static and learnable projection matrices, AMLP leverages adaptive projections computed from inputs in an attentive mode. The sample-aware adaptive projections enable communications among tokens in a sequence, and model the measurement between the query and key space. Furthermore, we marry AMLP with popular NAR models, deriving a highly efficient NAR-AMLP architecture with linear time and space complexity. Empirical results show that such marriage architecture surpasses competitive efficient NAR models, by a significant margin on text-to-speech synthesis and machine translation. We also test AMLP's self- and cross-attention ability separately with extensive ablation experiments, and find them comparable or even superior to the other efficient models. The efficiency analysis further shows that AMLP extremely reduces the memory cost against vanilla non-autoregressive models for long sequences.

Optimizing Non-Autoregressive Transformers with Contrastive Learning

Non-autoregressive Transformers (NATs) reduce the inference latency of Autoregressive Transformers (ATs) by predicting words all at once rather than in sequential order. They have achieved remarkable progress in machine translation as well as many other applications. However, a long-standing challenge for NATs is the learning of multi-modality data distribution, which is the main cause of the performance gap between NATs and ATs. In this paper, we propose to ease the difficulty of modality learning via sampling from the model distribution instead of the data distribution. We derive contrastive constraints to stabilize the training process and integrate this resulting objective with the state-of-the-art NAT architecture DA-Transformer. Our model \method is examined on 3 different tasks, including machine translation, text summarization, and paraphrasing with 5 benchmarks. Results show that our approach outperforms previous non-autoregressive baselines by a significant margin and establishes new state-of-the-art results for non-autoregressive transformers on all the benchmarks.

OpenICL: An Open-Source Framework for In-context Learning

In recent years, In-context Learning (ICL) has gained increasing attention and emerged as the new paradigm for large language model (LLM) evaluation. Unlike traditional fine-tuning methods, ICL instead adapts the pre-trained models to unseen tasks without any parameter updates. However, the implementation of ICL is sophisticated due to the diverse retrieval and inference methods involved, as well as the varying pre-processing requirements for different models, datasets, and tasks. A unified and flexible framework for ICL is urgently needed to ease the implementation of the aforementioned components. To facilitate ICL research, we introduce OpenICL, an open-source toolkit for ICL and LLM evaluation. OpenICL is research-friendly with a highly flexible architecture that users can easily combine different components to suit their needs. It also provides various state-of-the-art retrieval and inference methods to streamline the process of adapting ICL to cutting-edge research. The effectiveness of OpenICL has been validated on a wide range of NLP tasks, including classification, QA, machine translation, and semantic parsing. As a side-product, we found OpenICL to be an efficient yet robust tool for LLMs evaluation. OpenICL is released at https://github.com/Shark-NLP/OpenICL

Compositional Exemplars for In-context Learning

Large pretrained language models (LMs) have shown impressive In-Context Learning (ICL) ability, where the model learns to do an unseen task via a prompt consisting of input-output examples as the demonstration, without any parameter updates. The performance of ICL is highly dominated by the quality of the selected in-context examples. However, previous selection methods are mostly based on simple heuristics, leading to sub-optimal performance. In this work, we formulate in-context example selection as a subset selection problem. We propose CEIL(Compositional Exemplars for In-context Learning), which is instantiated by Determinantal Point Processes (DPPs) to model the interaction between the given input and in-context examples, and optimized through a carefully-designed contrastive learning objective to obtain preference from LMs. We validate CEIL on 12 classification and generation datasets from 7 distinct NLP tasks, including sentiment analysis, paraphrase detection, natural language inference, commonsense reasoning, open-domain question answering, code generation, and semantic parsing. Extensive experiments demonstrate not only the state-of-the-art performance but also the transferability and compositionality of CEIL, shedding new light on effective and efficient in-context learning. Our code is released at https://github.com/HKUNLP/icl-ceil.

In-Context Learning with Many Demonstration Examples

Large pre-training language models (PLMs) have shown promising in-context learning abilities. However, due to the backbone transformer architecture, existing PLMs are bottlenecked by the memory and computational cost when scaling up to a large context size, leaving instruction tuning and in-context learning of many demonstration examples, as well as long-range language modeling under-explored. In this study, we propose a long-range language model EVALM based on an efficient transformer mechanism. EVALM is trained with 8k tokens per batch line and can test up to 256k-lengthed contexts with extrapolation, 128 times to the limit of existing PLMs (e.g. GPT3). Based on EVALM, we scale up the size of examples efficiently in both instruction tuning and in-context learning to explore the boundary of the benefits from more annotated data. Experimental results on a diverse set of tasks show that EVALM achieves 4.1% higher accuracy on average, and the average length of achieving the best accuracy score over tasks is around 12k. We find that in-context learning can achieve higher performance with more demonstrations under many-shot instruction tuning (8k), and further extending the length of instructions (16k) can further improve the upper bound of scaling in-context learning.