PertMind: Eliciting Emergent Biological Reasoning in LLM via Reinforcement Learning on Cellular Perturbation Data

Large language models can describe mechanisms, yet scalable post-training still depends on costly, manually curated biological reasoning traces. Here we show that cellular perturbation atlases can instead become reinforcement-learning environments, where measured gene responses provide computable rewards for biological reasoning. We introduce PertMind, which combines trusted-trajectory supervised initialization with gene-, pathway-, and format-level reinforcement signals. Trained only on forward perturbation-response prediction, PertMind improved response inference in unseen cellular contexts while retaining general language capabilities. It also transferred without task-specific post-training to reverse perturbation identification, double-perturbation reasoning, phenotypic-screen prioritization, and biological-process interpretation. PertMind further generated biological profiles that supported competitive gene, cell, and donor representations across multiscale downstream tasks. These results support the hypothesis that reinforcement on experimental endpoints can concentrate reusable biological strategies already accessible to pretrained models. More broadly, perturbation-derived reinforcement learning offers a scalable route for transforming expanding experimental atlases into training environments for general-purpose biological reasoning.

ARAC: Benchmarking Auto-Research's Alignment and Completeness on End-to-End Researchs

The rapid advancement of Auto-Research has surfaced a fundamental evaluation challenge: how can we measure the alignment, logical coherence, and evolutionary completeness of its research trajectory with human research behavior? We propose Auto-Research's Alignment and Completeness, ARAC-Bench: a Researcher-Mimicking Evaluation framework that shifts the objective from matching final answers to reproducing high-quality human research processes. The framework operates through two synergistic components: the Academic Cognition Skills system, which is the first to transforms implicit reviewer expertise into stage-calibrated, quantifiable rubrics; and a three-stage capability diagnostic protocol, which decomposes the research process under strict modular constraints into three traceable, mutually independent dimensions: Proposal, Experiment, and Synthesis. Systematic evaluation of 11 SOTA frameworks yields a best alignment score of only 67.9 of 100, revealing a significant gap in simulating rigorous human methodology. Validation against Ph.D. Candidates rankings shows a strong correlation of 0.8141, confirming that ARAC-Bench reliably reflects the dimensions researchers truly value. ARAC-Bench provides not only a fine-grained diagnostic tool but also a scalable reward signal for training the next generation of autonomous research systems.

Remember-R1: Mitigating Long-Context Visual Forgetting through Reinforcement Learning

Multimodal large language models (MLLMs) increasingly rely on long chain-of-thought reasoning for complex tasks. However, as reasoning sequences lengthen, models may gradually rely less on visual evidence and more on accumulated textual context, leading to visual forgetting. Existing approaches do not directly constrain how visual evidence is used and maintained along the original reasoning trajectory, leaving long-context visual forgetting insufficiently addressed. To address this issue, we propose Remember-R1, a reinforcement learning framework that mitigates long-context visual forgetting by applying process-level supervision directly on the original reasoning trajectory. Specifically, Remember-R1 introduces rewards that encourage broader coverage of matched visual keywords, stronger persistence of visual dependence in later reasoning steps, and greater focus on question-relevant image regions. Experiments across multiple model scales and diverse multimodal benchmarks demonstrate that Remember-R1 consistently improves reasoning performance. Additional analyses further show that it slows the decline of visual attention during generation, supporting its effectiveness in mitigating long-context visual forgetting.

Unveiling the Unknown: Open Vocabulary Object Detection with Scene Graphs

Open-vocabulary object detection seeks to identify novel object categories that were not part of the training data. Many knowledge distillation-based approaches have shown promising performance by transferring knowledge from pre-trained vision-language models to object detection. However, these methods often overlook structured, image-specific relationships between objects, such as interactions and spatial arrangements. This oversight can significantly restrict the effectiveness of detecting novel categories. To address this issue, we propose a Scene-guided Relational Modeling detection framework. This framework utilizes scene graphs to capture structured semantic and spatial relationships between candidate regions and their contextual objects. It explicitly models interactions among neighboring regions and incorporates a Relation Attention Module to implicitly amplify the key relational cues extracted from the scene graph. Furthermore, we present a scene-based textual alignment branch that distills category knowledge from captions to guide relational alignment. This approach facilitates a seamless integration of visual relations with semantic information for enhanced detection performance. Comprehensive experiments show that our model achieves superior performance compared to other OVOD methods, improving the AP for novel categories on COCO and LVIS datasets.

HoloFair: Unified T2I Fairness Evaluation and Fair-GRPO Debiasing

Text-to-Image (T2I) models have made significant strides in visual realism and semantic consistency, yet they often perpetuate and amplify societal biases. Existing evaluation methods typically address only single-dimensional biases, lacking perspectives to uncover model biases at social-related deeper semantic levels. We introduce HoloFair, a comprehensive benchmark framework for multidimensional demographic bias analysis. Built upon our large-scale fairness-oriented dataset and the SpaFreq (Spatial-Frequency) attribute classifier, this framework proposes the Multi-attribute, Group-wise Bias Index (MGBI) metric, designed to assess both intrinsic diversity and conditional biases. Beyond evaluation, we further introduce Fair-GRPO, a reinforcement-learning-based debiasing method that alters the distribution of generative models through a designed multi-objective reward function. E.g., experiments on the SD3.5-Medium model demonstrate that Fair-GRPO significantly improves multidimensional fairness while maintaining high image quality. We also analyze potential reward hacking phenomena and provide corresponding mitigation strategies. Code and dataset are available at https://github.com/1059684669/HoloFair

LITMUS: Benchmarking Behavioral Jailbreaks of LLM Agents in Real OS Environments

The rapid proliferation of LLM-based autonomous agents in real operating system environments introduces a new category of safety risk beyond content safety: behavior jailbreak, where an adversary induces an agent to execute dangerous OS-level operations with irreversible consequences. Existing benchmarks either evaluate safety at the semantic layer alone, missing physical-layer harms, or fail to isolate test cases, letting earlier runs contaminate later ones. We present LITMUS (LLM-agents In-OS Testing for Measuring Unsafe Subversion), a benchmark addressing both gaps via a semantic-physical dual verification mechanism and OS-level state rollback. LITMUS comprises 819 high-risk test cases organized into one harmful seed subset and six attack-extended subsets covering three adversarial paradigms (jailbreak speaking, skill injection, and entity wrapping), plus a fully automated multi-agent evaluation framework judging behavior at both conversational and OS-level physical layers. Evaluation across frontier agents reveals three findings: (1) current agents lack effective safety awareness, with strong models (e.g., Claude Sonnet 4.6) still executing 40.64% of high-risk operations; (2) agents exhibit pervasive Execution Hallucination (EH), verbally refusing a request while the dangerous operation has already completed at the system level, invisible to every prior semantic-only framework; and (3) skill injection and entity wrapping attacks achieve high success rates, exposing pronounced agent vulnerabilities. LITMUS provides the first standardized platform for reproducible, physically grounded behavioral safety evaluation of LLM agents in real OS environments.

AHPA: Adaptive Hierarchical Prior Alignment for Diffusion Transformers

Representation alignment has recently emerged as an effective paradigm for accelerating Diffusion Transformer training. Despite their success, existing alignment methods typically impose a fixed supervision target or a fixed alignment granularity throughout the entire denoising trajectory, whether the guidance is provided by external vision encoders, internal self-representations, or VAE-derived features. We argue that such timestep-agnostic alignment is suboptimal because the useful granularity of representation supervision changes systematically with the signal-to-noise ratio. In high-noise regimes, diffusion models benefit more from coarse semantic and layout-level anchoring, whereas in low-noise regimes, the training signal should emphasize spatially detailed and structurally faithful refinement. This non-stationary alignment behavior creates a representational mismatch for static single-level supervisors. To address this issue, we propose Adaptive Hierarchical Prior Alignment (AHPA), a lightweight alignment framework that exploits the hierarchical representations naturally embedded in the frozen VAE encoder. Instead of using only a single compressed latent as the alignment target, AHPA extracts multi-level VAE features that provide complementary priors ranging from local geometry and spatial topology to coarse semantic layout. A timestep-conditioned Dynamic Router adaptively selects and weights these hierarchical priors along the denoising trajectory, thereby synchronizing the alignment granularity with the model's evolving training needs. Extensive experiments show that AHPA improves convergence and generation quality over baselines and incurs no additional inference cost while avoiding external encoder supervision during training.

Fair in Mind, Fair in Action? A Synchronous Benchmark for Understanding and Generation in UMLLMs

As artificial intelligence (AI) is increasingly deployed across domains, ensuring fairness has become a core challenge. However, the field faces a "Tower of Babel'' dilemma: fairness metrics abound, yet their underlying philosophical assumptions often conflict, hindering unified paradigms-particularly in unified Multimodal Large Language Models (UMLLMs), where biases propagate systemically across tasks. To address this, we introduce the IRIS Benchmark, to our knowledge the first benchmark designed to synchronously evaluate the fairness of both understanding and generation tasks in UMLLMs. Enabled by our demographic classifier, ARES, and four supporting large-scale datasets, the benchmark is designed to normalize and aggregate arbitrary metrics into a high-dimensional "fairness space'', integrating 60 granular metrics across three dimensions-Ideal Fairness, Real-world Fidelity, and Bias Inertia & Steerability (IRIS). Through this benchmark, our evaluation of leading UMLLMs uncovers systemic phenomena such as the "generation gap'', individual inconsistencies like "personality splits'', and the "counter-stereotype reward'', while offering diagnostics to guide the optimization of their fairness capabilities. With its novel and extensible framework, the IRIS benchmark is capable of integrating evolving fairness metrics, ultimately helping to resolve the "Tower of Babel'' impasse. Project Page: https://iris-benchmark-web.vercel.app/

Low-Light Video Enhancement with An Effective Spatial-Temporal Decomposition Paradigm

Low-Light Video Enhancement (LLVE) seeks to restore dynamic or static scenes plagued by severe invisibility and noise. In this paper, we present an innovative video decomposition strategy that incorporates view-independent and view-dependent components to enhance the performance of LLVE. The framework is called View-aware Low-light Video Enhancement (VLLVE). We leverage dynamic cross-frame correspondences for the view-independent term (which primarily captures intrinsic appearance) and impose a scene-level continuity constraint on the view-dependent term (which mainly describes the shading condition) to achieve consistent and satisfactory decomposition results. To further ensure consistent decomposition, we introduce a dual-structure enhancement network featuring a cross-frame interaction mechanism. By supervising different frames simultaneously, this network encourages them to exhibit matching decomposition features. This mechanism can seamlessly integrate with encoder-decoder single-frame networks, incurring minimal additional parameter costs. Building upon VLLVE, we propose a more comprehensive decomposition strategy by introducing an additive residual term, resulting in VLLVE++. This residual term can simulate scene-adaptive degradations, which are difficult to model using a decomposition formulation for common scenes, thereby further enhancing the ability to capture the overall content of videos. In addition, VLLVE++ enables bidirectional learning for both enhancement and degradation-aware correspondence refinement (end-to-end manner), effectively increasing reliable correspondences while filtering out incorrect ones. Notably, VLLVE++ demonstrates strong capability in handling challenging cases, such as real-world scenes and videos with high dynamics. Extensive experiments are conducted on widely recognized LLVE benchmarks.

Robust-R1: Degradation-Aware Reasoning for Robust Visual Understanding

Multimodal Large Language Models struggle to maintain reliable performance under extreme real-world visual degradations, which impede their practical robustness. Existing robust MLLMs predominantly rely on implicit training/adaptation that focuses solely on visual encoder generalization, suffering from limited interpretability and isolated optimization. To overcome these limitations, we propose Robust-R1, a novel framework that explicitly models visual degradations through structured reasoning chains. Our approach integrates: (i) supervised fine-tuning for degradation-aware reasoning foundations, (ii) reward-driven alignment for accurately perceiving degradation parameters, and (iii) dynamic reasoning depth scaling adapted to degradation intensity. To facilitate this approach, we introduce a specialized 11K dataset featuring realistic degradations synthesized across four critical real-world visual processing stages, each annotated with structured chains connecting degradation parameters, perceptual influence, pristine semantic reasoning chain, and conclusion. Comprehensive evaluations demonstrate state-of-the-art robustness: Robust-R1 outperforms all general and robust baselines on the real-world degradation benchmark R-Bench, while maintaining superior anti-degradation performance under multi-intensity adversarial degradations on MMMB, MMStar, and RealWorldQA.