Cognitive Twins: Investigating Personalized Thinking Model Building and Its Performance Enhancement with Human-in-the-Loop

This paper presents the Personalized Thinking Model (PTM), a hierarchical and interpretable learner representation designed for AI supported education. PTM organizes evidence from learner journals into a five-layer structure covering behavioral instances, behavioral patterns, cognitive routines, metacognitive tendencies, and self-system values. PTM is grounded in Marzano's New Taxonomy of Educational Objectives and tries to clone learner's thinking model and build cognitive twin. It was constructed using a pipeline that combines large language model inference (Gemini 2.5 Pro), sentence embeddings, dimensionality reduction, and consensus clustering. This paper evaluates PTM fidelity through three methods applied to 40 participants in a seven-week study. First, automatic evaluation using atomic information point matching yielded an overall F1 score of 74.57% before human-in-the-loop (HITL) refinement and 75.48% after refinement. Second, user evaluation using a Likert scale produced mean ratings of 4.26 and 4.30 on a five-point scale for pre and post-HITL conditions respectively. Third, semantic alignment verification showed that topic coherence increased from 0.436 at the behavioral layer to 0.626 at the core value layer, while lexical overlap with journal vocabulary decreased from 0.114 to 0.007 across those same layers. These results suggest that the PTM produces outputs with acceptable fidelity, was generally perceived by users as reflecting their thinking, and showed a pattern consistent with semantic abstraction across layers.

Domain-Filtered Knowledge Graphs from Sparse Autoencoder Features

Sparse autoencoders (SAEs) extract millions of interpretable features from a language model, but flat feature inventories aren't very useful on their own. Domain concepts get mixed with generic and weakly grounded features, while related ideas are scattered across many units, and there's no way to understand relationships between features. We address this by first constructing a strict domain-specific concept universe from a large SAE inventory using contrastive activations and a multi-stage filtering process. Next, we build two aligned graph views on the filtered set: a co-occurrence graph for corpus-level conceptual structure, organized at multiple levels of granularity, and a transcoder-based mechanism graph that links source-layer and target-layer features through sparse latent pathways. Automated edge labeling then turns these graph views into readable knowledge graphs rather than unlabeled layouts. In a case study on a biology textbook, these graphs recover coherent chapter and subchapter-level structure, reveal concepts that bridge neighboring topics, and transform messy sentence-level activity containing thousands of features into compact, readable views that illustrate the model's local activity. Taken together, this reframes a flat SAE inventory as an internal knowledge graph that converts feature-level interpretability into a global map of model knowledge and enables audits of reasoning faithfulness.

Text Corpora as Concept Fields: Black-Box Hallucination and Novelty Measurement

We introduce the **Concept Field** of a text corpus: a local drift field with pointwise uncertainty, estimated in sentence-embedding space from the deltas between consecutive sentences. Given a candidate sentence transition, we score its agreement with the field by $ζ$, the mean absolute z-distance between the observed delta and the field's local Gaussian estimate. The score is black-box (no model internals), corpus-attributable (every score traces to nearby corpus sentences), and admits a direct probabilistic reading. We support the computation with the introduction of a **Vector Sequence Database (VSDB)** that stores embeddings together with sequence-position and next-delta metadata. We evaluate this approach on two large-scale settings: hallucination-style groundedness detection over the U.S. Code of Federal Regulations, and novelty detection over Project Gutenberg. Using controlled LLM-generated rewrites, Concept Fields achieve strong selective classification performance under a grounded / ungrounded / unsure triage policy, which unlike retrieval-centric baselines have similar coverage-risk behavior across both domains, supporting a probability-based interpretation that transfers across domains. We also sketch how divergence and curl of the Concept Field, computed on dense clusters, surface qualitatively meaningful semantic patterns (logic sources, sinks, and implicit topics), which we offer as hypothesis-generating rather than as a quantitative result. Concept Fields provide a fast, lightweight, and interpretable signal for groundedness and novelty, complementary to LLM-as-judge and white-box detectors.

From Similarity to Structure: Training-free LLM Context Compression with Hybrid Graph Priors

Long-context large language models remain computationally expensive to run and often fail to reliably process very long inputs, which makes context compression an important component of many systems. Existing compression approaches typically rely on trained compressors, dense retrieval-style selection, or heuristic trimming, and they often struggle to jointly preserve task relevance, topic coverage, and cross-sentence coherence under a strict token budget. To address this, we propose a training-free and model-agnostic compression framework that selects a compact set of sentences guided by structural graph priors. Our method constructs a sparse hybrid sentence graph that combines mutual k-NN semantic edges with short-range sequential edges, extracts a topic skeleton via clustering, and ranks sentences using an interpretable score that integrates task relevance, cluster representativeness, bridge centrality, and a cycle coverage cue. A budgeted greedy selection with redundancy suppression then produces a readable compressed context in original order. Experimental results on four datasets show that our approach is competitive with strong extractive and abstractive baselines, demonstrating larger gains on long-document benchmarks.

Rethinking Reasoning-Intensive Retrieval: Evaluating and Advancing Retrievers in Agentic Search Systems

Reasoning-intensive retrieval aims to surface evidence that supports downstream reasoning rather than merely matching topical similarity. This capability is increasingly important for agentic search systems, where retrievers must provide complementary evidence across iterative search and synthesis. However, existing work remains limited on both evaluation and training: benchmarks such as BRIGHT provide narrow gold sets and evaluate retrievers in isolation, while synthetic training corpora often optimize single-passage relevance rather than evidence portfolio construction. We introduce BRIGHT-Pro, an expert-annotated benchmark that expands each query with multi-aspect gold evidence and evaluates retrievers under both static and agentic search protocols. We further construct RTriever-Synth, an aspect-decomposed synthetic corpus that generates complementary positives and positive-conditioned hard negatives, and use it to LoRA fine-tune RTriever-4B from Qwen3-Embedding-4B. Experiments across lexical, general-purpose, and reasoning-intensive retrievers show that aspect-aware and agentic evaluation expose behaviors hidden by standard metrics, while RTriever-4B substantially improves over its base model.

Automating Categorization of Scientific Texts with In-Context Learning and Prompt-Chaining in Large Language Models

The relentless expansion of scientific literature presents significant challenges for navigation and knowledge discovery. Within Research Information Retrieval, established tasks such as text summarization and classification remain crucial for enabling researchers and practitioners to effectively navigate this vast landscape, so that efforts have increasingly been focused on developing advanced research information systems. These systems aim not only to provide standard keyword-based search functionalities but also to incorporate capabilities for automatic content categorization within knowledge-intensive organizations across academia and industry. This study systematically evaluates the performance of off-the-shelf Large Language Models (LLMs) in analyzing scientific texts according to a given classification scheme. We utilized the hierarchical ORKG taxonomy as a classification framework, employing the FORC dataset as ground truth. We investigated the effectiveness of advanced prompt engineering strategies, namely In-Context Learning (ICL) and Prompt Chaining, and experimentally explored the influence of the LLMs' temperature hyperparameter on classification accuracy. Our experiments demonstrate that Prompt Chaining yields superior classification accuracy compared to pure ICL, particularly when applied to the nested structure of the ORKG taxonomy. LLMs with prompt chaining outperform the state-of-the-art models for domain (1st level) prediction and show even better performance for subject (2nd level) prediction compared to the older BERT model. However, LLMs are not yet able to perform well in classifying the topic (3rd level) of research areas based on this specific hierarchical taxonomy, as they only reach about 50% accuracy even with prompt chaining.

Partial Effective Information Decomposition for Synergistic Causality

Causality is a central topic in scientific inquiry, yet for complex systems, the identification and analysis of synergistic causation remain a challenging and fundamental problem. In the context of causal relations among multivariate variables, a decomposition framework grounded in interventionist causation is still lacking. To address this gap, this paper proposes Partial Effective Information Decomposition (PEID), a framework that decomposes the influence of multiple source variables on a target variable under maximum-entropy interventions into unique and synergistic information, thereby providing a unified and computable characterization of synergistic causal relations. Theoretically, in the three-variable case, the proposed framework is compatible with the major axioms of Partial Information Decomposition (PID). Empirically, under maximum-entropy interventions, correlations among input variables are removed, causing redundancy to vanish and thereby enabling PEID to compute synergistic relations. Furthermore, based on this framework, it is possible to define causal graphs containing hyperedges as well as downward causation, thus offering a unified toolkit for analyzing cross-scale and multivariate causal mechanisms in complex systems. Finally, applying the framework to a machine-learning-based air quality forecasting task on KnowAir-V2, we demonstrate that PEID can extract interpretable inter-station causal structures from a learned dynamical model. These results suggest that PEID provides a general interventionist information-theoretic tool for analyzing multivariate and synergistic causal mechanisms in complex systems.

SoDa2: Single-Stage Open-Set Domain Adaptation via Decoupled Alignment for Cross-Scene Hyperspectral Image Classification

Cross-scene hyperspectral image (HSI) classification stands as a fundamental research topic in remote sensing, with extensive applications spanning various fields. Owing to the inclusion of unknown categories in the target domain and the existence of domain shift across different scenes, open-set domain adaptation techniques are commonly employed to address cross-scene HSI classification. However, existing open-set cross-scene HSI classification methods still face two critical challenges: (1) domain shift issues arising from the direct alignment of mixed spectral-spatial features; (2) high computational costs caused by two-stage training strategies. To address these issues, this paper proposes a single-stage open-set domain adaptation method with decoupled alignment (SoDa$^2$) for cross-scene HSI classification. A contribution-aware dual-modality feature extraction is customized to disentangle the characteristics from spectral sequence signals and spatial details, selectively and adaptively enhancing discriminative features. The decoupled alignment module minimizes the Maximum Mean Discrepancy to independently reduce the spectral discrepancy and the spatial discrepancy between the source and target domains, extracting more fine-grained domain-invariant features. A cost-effective single-stage dual-branch framework is designed to learn MMD-constrainted aligned features and constraint-free intrinsic features for adaptive distinction between known and unknown classes. This framework employs a Gaussian Mixture Model to model the squared cosine similarity distribution between the two feature types, enabling open-set recognition without prior knowledge of unknown classes. Extensive experiments on three groups of HSI datasets demonstrate that SoDa$^2$ outperforms state-of-the-art methods, achieving superior classification accuracy and model transferability for open-set cross-scene tasks.

Sparse Personalized Text Generation with Multi-Trajectory Reasoning

As Large Language Models (LLMs) advance, personalization has become a key mechanism for tailoring outputs to individual user needs. However, most existing methods rely heavily on dense interaction histories, making them ineffective in cold-start scenarios where such data is sparse or unavailable. While external signals (e.g., content of similar users) can offer a potential remedy, leveraging them effectively remains challenging: raw context is often noisy, and existing methods struggle to reason over heterogeneous data sources. To address these issues, we introduce PAT (Personalization with Aligned Trajectories), a reasoning framework for cold-start LLM personalization. PAT first retrieves information along two complementary trajectories: writing-style cues from stylistically similar users and topic-specific context from preference-aligned users. It then employs a reinforcement learning-based, iterative dual-reasoning mechanism that enables the LLM to jointly refine and integrate these signals. Experimental results across real-world personalization benchmarks show that PAT consistently improves generation quality and alignment under sparse-data conditions, establishing a strong solution to the cold-start personalization problem.

Can QPP Choose the Right Query Variant? Evaluating Query Variant Selection for RAG Pipelines

Large Language Models (LLMs) have made query reformulation ubiquitous in modern retrieval and Retrieval-Augmented Generation (RAG) pipelines, enabling the generation of multiple semantically equivalent query variants. However, executing the full pipeline for every reformulation is computationally expensive, motivating selective execution: can we identify the best query variant before incurring downstream retrieval and generation costs? We investigate Query Performance Prediction (QPP) as a mechanism for variant selection across ad-hoc retrieval and end-to-end RAG. Unlike traditional QPP, which estimates query difficulty across topics, we study intra-topic discrimination - selecting the optimal reformulation among competing variants of the same information need. Through large-scale experiments on TREC-RAG using both sparse and dense retrievers, we evaluate pre- and post-retrieval predictors under correlation- and decision-based metrics. Our results reveal a systematic divergence between retrieval and generation objectives: variants that maximize ranking metrics such as nDCG often fail to produce the best generated answers, exposing a "utility gap" between retrieval relevance and generation fidelity. Nevertheless, QPP can reliably identify variants that improve end-to-end quality over the original query. Notably, lightweight pre-retrieval predictors frequently match or outperform more expensive post-retrieval methods, offering a latency-efficient approach to robust RAG.