Tell2Reg: Establishing spatial correspondence between images by the same language prompts

Spatial correspondence can be represented by pairs of segmented regions, such that the image registration networks aim to segment corresponding regions rather than predicting displacement fields or transformation parameters. In this work, we show that such a corresponding region pair can be predicted by the same language prompt on two different images using the pre-trained large multimodal models based on GroundingDINO and SAM. This enables a fully automated and training-free registration algorithm, potentially generalisable to a wide range of image registration tasks. In this paper, we present experimental results using one of the challenging tasks, registering inter-subject prostate MR images, which involves both highly variable intensity and morphology between patients. Tell2Reg is training-free, eliminating the need for costly and time-consuming data curation and labelling that was previously required for this registration task. This approach outperforms unsupervised learning-based registration methods tested, and has a performance comparable to weakly-supervised methods. Additional qualitative results are also presented to suggest that, for the first time, there is a potential correlation between language semantics and spatial correspondence, including the spatial invariance in language-prompted regions and the difference in language prompts between the obtained local and global correspondences. Code is available at https://github.com/yanwenCi/Tell2Reg.git.

Robotic CBCT Meets Robotic Ultrasound

The multi-modality imaging system offers optimal fused images for safe and precise interventions in modern clinical practices, such as computed tomography - ultrasound (CT-US) guidance for needle insertion. However, the limited dexterity and mobility of current imaging devices hinder their integration into standardized workflows and the advancement toward fully autonomous intervention systems. In this paper, we present a novel clinical setup where robotic cone beam computed tomography (CBCT) and robotic US are pre-calibrated and dynamically co-registered, enabling new clinical applications. This setup allows registration-free rigid registration, facilitating multi-modal guided procedures in the absence of tissue deformation. First, a one-time pre-calibration is performed between the systems. To ensure a safe insertion path by highlighting critical vasculature on the 3D CBCT, SAM2 segments vessels from B-mode images, using the Doppler signal as an autonomously generated prompt. Based on the registration, the Doppler image or segmented vessel masks are then mapped onto the CBCT, creating an optimally fused image with comprehensive detail. To validate the system, we used a specially designed phantom, featuring lesions covered by ribs and multiple vessels with simulated moving flow. The mapping error between US and CBCT resulted in an average deviation of 1.72+-0.62 mm. A user study demonstrated the effectiveness of CBCT-US fusion for needle insertion guidance, showing significant improvements in time efficiency, accuracy, and success rate. Needle intervention performance improved by approximately 50% compared to the conventional US-guided workflow. We present the first robotic dual-modality imaging system designed to guide clinical applications. The results show significant performance improvements compared to traditional manual interventions.

An Adversarial Approach to Register Extreme Resolution Tissue Cleared 3D Brain Images

We developed a generative patch based 3D image registration model that can register very high resolution images obtained from a biochemical process name tissue clearing. Tissue clearing process removes lipids and fats from the tissue and make the tissue transparent. When cleared tissues are imaged with Light-sheet fluorescent microscopy, the resulting images give a clear window to the cellular activities and dynamics inside the tissue.Thus the images obtained are very rich with cellular information and hence their resolution is extremely high (eg .2560x2160x676). Analyzing images with such high resolution is a difficult task for any image analysis pipeline.Image registration is a common step in image analysis pipeline when comparison between images are required. Traditional image registration methods fail to register images with such extant. In this paper we addressed this very high resolution image registration issue by proposing a patch-based generative network named InvGAN. Our proposed network can register very high resolution tissue cleared images. The tissue cleared dataset used in this paper are obtained from a tissue clearing protocol named CUBIC. We compared our method both with traditional and deep-learning based registration methods.Two different versions of CUBIC dataset are used, representing two different resolutions 25% and 100% respectively. Experiments on two different resolutions clearly show the impact of resolution on the registration quality. At 25% resolution, our method achieves comparable registration accuracy with very short time (7 minutes approximately). At 100% resolution, most of the traditional registration methods fail except Elastix registration tool.Elastix takes 28 hours to register where proposed InvGAN takes only 10 minutes.

3D Nephrographic Image Synthesis in CT Urography with the Diffusion Model and Swin Transformer

Purpose: This study aims to develop and validate a method for synthesizing 3D nephrographic phase images in CT urography (CTU) examinations using a diffusion model integrated with a Swin Transformer-based deep learning approach. Materials and Methods: This retrospective study was approved by the local Institutional Review Board. A dataset comprising 327 patients who underwent three-phase CTU (mean $\pm$ SD age, 63 $\pm$ 15 years; 174 males, 153 females) was curated for deep learning model development. The three phases for each patient were aligned with an affine registration algorithm. A custom deep learning model coined dsSNICT (diffusion model with a Swin transformer for synthetic nephrographic phase images in CT) was developed and implemented to synthesize the nephrographic images. Performance was assessed using Peak Signal-to-Noise Ratio (PSNR), Structural Similarity Index (SSIM), Mean Absolute Error (MAE), and Fr\'{e}chet Video Distance (FVD). Qualitative evaluation by two fellowship-trained abdominal radiologists was performed. Results: The synthetic nephrographic images generated by our proposed approach achieved high PSNR (26.3 $\pm$ 4.4 dB), SSIM (0.84 $\pm$ 0.069), MAE (12.74 $\pm$ 5.22 HU), and FVD (1323). Two radiologists provided average scores of 3.5 for real images and 3.4 for synthetic images (P-value = 0.5) on a Likert scale of 1-5, indicating that our synthetic images closely resemble real images. Conclusion: The proposed approach effectively synthesizes high-quality 3D nephrographic phase images. This model can be used to reduce radiation dose in CTU by 33.3\% without compromising image quality, which thereby enhances the safety and diagnostic utility of CT urography.

PoleStack: Robust Pole Estimation of Irregular Objects from Silhouette Stacking

We present an algorithm to estimate the rotation pole of a principal-axis rotator using silhouette images collected from multiple camera poses. First, a set of images is stacked to form a single silhouette-stack image, where the object's rotation introduces reflective symmetry about the imaged pole direction. We estimate this projected-pole direction by identifying maximum symmetry in the silhouette stack. To handle unknown center-of-mass image location, we apply the Discrete Fourier Transform to produce the silhouette-stack amplitude spectrum, achieving translation invariance and increased robustness to noise. Second, the 3D pole orientation is estimated by combining two or more projected-pole measurements collected from different camera orientations. We demonstrate degree-level pole estimation accuracy using low-resolution imagery, showing robustness to severe surface shadowing and centroid-based image-registration errors. The proposed approach could be suitable for pole estimation during both the approach phase toward a target object and while hovering.

Test Time Training for 4D Medical Image Interpolation

4D medical image interpolation is essential for improving temporal resolution and diagnostic precision in clinical applications. Previous works ignore the problem of distribution shifts, resulting in poor generalization under different distribution. A natural solution would be to adapt the model to a new test distribution, but this cannot be done if the test input comes without a ground truth label. In this paper, we propose a novel test time training framework which uses self-supervision to adapt the model to a new distribution without requiring any labels. Indeed, before performing frame interpolation on each test video, the model is trained on the same instance using a self-supervised task, such as rotation prediction or image reconstruction. We conduct experiments on two publicly available 4D medical image interpolation datasets, Cardiac and 4D-Lung. The experimental results show that the proposed method achieves significant performance across various evaluation metrics on both datasets. It achieves higher peak signal-to-noise ratio values, 33.73dB on Cardiac and 34.02dB on 4D-Lung. Our method not only advances 4D medical image interpolation but also provides a template for domain adaptation in other fields such as image segmentation and image registration.

Multi-Objective Deep-Learning-based Biomechanical Deformable Image Registration with MOREA

When choosing a deformable image registration (DIR) approach for images with large deformations and content mismatch, the realism of found transformations often needs to be traded off against the required runtime. DIR approaches using deep learning (DL) techniques have shown remarkable promise in instantly predicting a transformation. However, on difficult registration problems, the realism of these transformations can fall short. DIR approaches using biomechanical, finite element modeling (FEM) techniques can find more realistic transformations, but tend to require much longer runtimes. This work proposes the first hybrid approach to combine them, with the aim of getting the best of both worlds. This hybrid approach, called DL-MOREA, combines a recently introduced multi-objective DL-based DIR approach which leverages the VoxelMorph framework, called DL-MODIR, with MOREA, an evolutionary algorithm-based, multi-objective DIR approach in which a FEM-like biomechanical mesh transformation model is used. In our proposed hybrid approach, the DL results are used to smartly initialize MOREA, with the aim of more efficiently optimizing its mesh transformation model. We empirically compare DL-MOREA against its components, DL-MODIR and MOREA, on CT scan pairs capturing large bladder filling differences of 15 cervical cancer patients. While MOREA requires a median runtime of 45 minutes, DL-MOREA can already find high-quality transformations after 5 minutes. Compared to the DL-MODIR transformations, the transformations found by DL-MOREA exhibit far less folding and improve or preserve the bladder contour distance error.

Dr. Splat: Directly Referring 3D Gaussian Splatting via Direct Language Embedding Registration

We introduce Dr. Splat, a novel approach for open-vocabulary 3D scene understanding leveraging 3D Gaussian Splatting. Unlike existing language-embedded 3DGS methods, which rely on a rendering process, our method directly associates language-aligned CLIP embeddings with 3D Gaussians for holistic 3D scene understanding. The key of our method is a language feature registration technique where CLIP embeddings are assigned to the dominant Gaussians intersected by each pixel-ray. Moreover, we integrate Product Quantization (PQ) trained on general large-scale image data to compactly represent embeddings without per-scene optimization. Experiments demonstrate that our approach significantly outperforms existing approaches in 3D perception benchmarks, such as open-vocabulary 3D semantic segmentation, 3D object localization, and 3D object selection tasks. For video results, please visit : https://drsplat.github.io/

End-to-End Deep Learning for Structural Brain Imaging: A Unified Framework

Brain imaging analysis is fundamental in neuroscience, providing valuable insights into brain structure and function. Traditional workflows follow a sequential pipeline-brain extraction, registration, segmentation, parcellation, network generation, and classification-treating each step as an independent task. These methods rely heavily on task-specific training data and expert intervention to correct intermediate errors, making them particularly burdensome for high-dimensional neuroimaging data, where annotations and quality control are costly and time-consuming. We introduce UniBrain, a unified end-to-end framework that integrates all processing steps into a single optimization process, allowing tasks to interact and refine each other. Unlike traditional approaches that require extensive task-specific annotations, UniBrain operates with minimal supervision, leveraging only low-cost labels (i.e., classification and extraction) and a single labeled atlas. By jointly optimizing extraction, registration, segmentation, parcellation, network generation, and classification, UniBrain enhances both accuracy and computational efficiency while significantly reducing annotation effort. Experimental results demonstrate its superiority over existing methods across multiple tasks, offering a more scalable and reliable solution for neuroimaging analysis. Our code and data can be found at https://github.com/Anonymous7852/UniBrain

Label Correction for Road Segmentation Using Road-side Cameras

Reliable road segmentation in all weather conditions is critical for intelligent transportation applications, autonomous vehicles and advanced driver's assistance systems. For robust performance, all weather conditions should be included in the training data of deep learning-based perception models. However, collecting and annotating such a dataset requires extensive resources. In this paper, existing roadside camera infrastructure is utilized for collecting road data in varying weather conditions automatically. Additionally, a novel semi-automatic annotation method for roadside cameras is proposed. For each camera, only one frame is labeled manually and then the label is transferred to other frames of that camera feed. The small camera movements between frames are compensated using frequency domain image registration. The proposed method is validated with roadside camera data collected from 927 cameras across Finland over 4 month time period during winter. Training on the semi-automatically labeled data boosted the segmentation performance of several deep learning segmentation models. Testing was carried out on two different datasets to evaluate the robustness of the resulting models. These datasets were an in-domain roadside camera dataset and out-of-domain dataset captured with a vehicle on-board camera.