Speckle2Self: Self-Supervised Ultrasound Speckle Reduction Without Clean Data

Image denoising is a fundamental task in computer vision, particularly in medical ultrasound (US) imaging, where speckle noise significantly degrades image quality. Although recent advancements in deep neural networks have led to substantial improvements in denoising for natural images, these methods cannot be directly applied to US speckle noise, as it is not purely random. Instead, US speckle arises from complex wave interference within the body microstructure, making it tissue-dependent. This dependency means that obtaining two independent noisy observations of the same scene, as required by pioneering Noise2Noise, is not feasible. Additionally, blind-spot networks also cannot handle US speckle noise due to its high spatial dependency. To address this challenge, we introduce Speckle2Self, a novel self-supervised algorithm for speckle reduction using only single noisy observations. The key insight is that applying a multi-scale perturbation (MSP) operation introduces tissue-dependent variations in the speckle pattern across different scales, while preserving the shared anatomical structure. This enables effective speckle suppression by modeling the clean image as a low-rank signal and isolating the sparse noise component. To demonstrate its effectiveness, Speckle2Self is comprehensively compared with conventional filter-based denoising algorithms and SOTA learning-based methods, using both realistic simulated US images and human carotid US images. Additionally, data from multiple US machines are employed to evaluate model generalization and adaptability to images from unseen domains. \textit{Code and datasets will be released upon acceptance.

Mutual Information Free Topological Generalization Bounds via Stability

Providing generalization guarantees for stochastic optimization algorithms is a major challenge in modern learning theory. Recently, several studies highlighted the impact of the geometry of training trajectories on the generalization error, both theoretically and empirically. Among these works, a series of topological generalization bounds have been proposed, relating the generalization error to notions of topological complexity that stem from topological data analysis (TDA). Despite their empirical success, these bounds rely on intricate information-theoretic (IT) terms that can be bounded in specific cases but remain intractable for practical algorithms (such as ADAM), potentially reducing the relevance of the derived bounds. In this paper, we seek to formulate comprehensive and interpretable topological generalization bounds free of intractable mutual information terms. To this end, we introduce a novel learning theoretic framework that departs from the existing strategies via proof techniques rooted in algorithmic stability. By extending an existing notion of \textit{hypothesis set stability}, to \textit{trajectory stability}, we prove that the generalization error of trajectory-stable algorithms can be upper bounded in terms of (i) TDA quantities describing the complexity of the trajectory of the optimizer in the parameter space, and (ii) the trajectory stability parameter of the algorithm. Through a series of experimental evaluations, we demonstrate that the TDA terms in the bound are of great importance, especially as the number of training samples grows. This ultimately forms an explanation of the empirical success of the topological generalization bounds.

Semantic Scene Graph for Ultrasound Image Explanation and Scanning Guidance

Understanding medical ultrasound imaging remains a long-standing challenge due to significant visual variability caused by differences in imaging and acquisition parameters. Recent advancements in large language models (LLMs) have been used to automatically generate terminology-rich summaries orientated to clinicians with sufficient physiological knowledge. Nevertheless, the increasing demand for improved ultrasound interpretability and basic scanning guidance among non-expert users, e.g., in point-of-care settings, has not yet been explored. In this study, we first introduce the scene graph (SG) for ultrasound images to explain image content to ordinary and provide guidance for ultrasound scanning. The ultrasound SG is first computed using a transformer-based one-stage method, eliminating the need for explicit object detection. To generate a graspable image explanation for ordinary, the user query is then used to further refine the abstract SG representation through LLMs. Additionally, the predicted SG is explored for its potential in guiding ultrasound scanning toward missing anatomies within the current imaging view, assisting ordinary users in achieving more standardized and complete anatomical exploration. The effectiveness of this SG-based image explanation and scanning guidance has been validated on images from the left and right neck regions, including the carotid and thyroid, across five volunteers. The results demonstrate the potential of the method to maximally democratize ultrasound by enhancing its interpretability and usability for ordinaries.

UltraAD: Fine-Grained Ultrasound Anomaly Classification via Few-Shot CLIP Adaptation

Precise anomaly detection in medical images is critical for clinical decision-making. While recent unsupervised or semi-supervised anomaly detection methods trained on large-scale normal data show promising results, they lack fine-grained differentiation, such as benign vs. malignant tumors. Additionally, ultrasound (US) imaging is highly sensitive to devices and acquisition parameter variations, creating significant domain gaps in the resulting US images. To address these challenges, we propose UltraAD, a vision-language model (VLM)-based approach that leverages few-shot US examples for generalized anomaly localization and fine-grained classification. To enhance localization performance, the image-level token of query visual prototypes is first fused with learnable text embeddings. This image-informed prompt feature is then further integrated with patch-level tokens, refining local representations for improved accuracy. For fine-grained classification, a memory bank is constructed from few-shot image samples and corresponding text descriptions that capture anatomical and abnormality-specific features. During training, the stored text embeddings remain frozen, while image features are adapted to better align with medical data. UltraAD has been extensively evaluated on three breast US datasets, outperforming state-of-the-art methods in both lesion localization and fine-grained medical classification. The code will be released upon acceptance.

NeRF-based CBCT Reconstruction needs Normalization and Initialization

Cone Beam Computed Tomography (CBCT) is widely used in medical imaging. However, the limited number and intensity of X-ray projections make reconstruction an ill-posed problem with severe artifacts. NeRF-based methods have achieved great success in this task. However, they suffer from a local-global training mismatch between their two key components: the hash encoder and the neural network. Specifically, in each training step, only a subset of the hash encoder's parameters is used (local sparse), whereas all parameters in the neural network participate (global dense). Consequently, hash features generated in each step are highly misaligned, as they come from different subsets of the hash encoder. These misalignments from different training steps are then fed into the neural network, causing repeated inconsistent global updates in training, which leads to unstable training, slower convergence, and degraded reconstruction quality. Aiming to alleviate the impact of this local-global optimization mismatch, we introduce a Normalized Hash Encoder, which enhances feature consistency and mitigates the mismatch. Additionally, we propose a Mapping Consistency Initialization(MCI) strategy that initializes the neural network before training by leveraging the global mapping property from a well-trained model. The initialized neural network exhibits improved stability during early training, enabling faster convergence and enhanced reconstruction performance. Our method is simple yet effective, requiring only a few lines of code while substantially improving training efficiency on 128 CT cases collected from 4 different datasets, covering 7 distinct anatomical regions.

PhenoKG: Knowledge Graph-Driven Gene Discovery and Patient Insights from Phenotypes Alone

Identifying causative genes from patient phenotypes remains a significant challenge in precision medicine, with important implications for the diagnosis and treatment of genetic disorders. We propose a novel graph-based approach for predicting causative genes from patient phenotypes, with or without an available list of candidate genes, by integrating a rare disease knowledge graph (KG). Our model, combining graph neural networks and transformers, achieves substantial improvements over the current state-of-the-art. On the real-world MyGene2 dataset, it attains a mean reciprocal rank (MRR) of 24.64\% and nDCG@100 of 33.64\%, surpassing the best baseline (SHEPHERD) at 19.02\% MRR and 30.54\% nDCG@100. We perform extensive ablation studies to validate the contribution of each model component. Notably, the approach generalizes to cases where only phenotypic data are available, addressing key challenges in clinical decision support when genomic information is incomplete.

Language Agents for Hypothesis-driven Clinical Decision Making with Reinforcement Learning

Clinical decision-making is a dynamic, interactive, and cyclic process where doctors have to repeatedly decide on which clinical action to perform and consider newly uncovered information for diagnosis and treatment. Large Language Models (LLMs) have the potential to support clinicians in this process, however, most applications of LLMs in clinical decision support suffer from one of two limitations: Either they assume the unrealistic scenario of immediate availability of all patient information and do not model the interactive and iterative investigation process, or they restrict themselves to the limited "out-of-the-box" capabilities of large pre-trained models without performing task-specific training. In contrast to this, we propose to model clinical decision-making for diagnosis with a hypothesis-driven uncertainty-aware language agent, LA-CDM, that converges towards a diagnosis via repeatedly requesting and interpreting relevant tests. Using a hybrid training paradigm combining supervised and reinforcement learning, we train LA-CDM with three objectives targeting critical aspects of clinical decision-making: accurate hypothesis generation, hypothesis uncertainty estimation, and efficient decision-making. We evaluate our methodology on MIMIC-CDM, a real-world dataset covering four abdominal diseases containing various clinical tests and show the benefit of explicitly training clinical decision-making for increasing diagnostic performance and efficiency.

Continuous-Time SO(3) Forecasting with Savitzky--Golay Neural Controlled Differential Equations

Tracking and forecasting the rotation of objects is fundamental in computer vision and robotics, yet SO(3) extrapolation remains challenging as (1) sensor observations can be noisy and sparse, (2) motion patterns can be governed by complex dynamics, and (3) application settings can demand long-term forecasting. This work proposes modeling continuous-time rotational object dynamics on $SO(3)$ using Neural Controlled Differential Equations guided by Savitzky-Golay paths. Unlike existing methods that rely on simplified motion assumptions, our method learns a general latent dynamical system of the underlying object trajectory while respecting the geometric structure of rotations. Experimental results on real-world data demonstrate compelling forecasting capabilities compared to existing approaches.

From EHRs to Patient Pathways: Scalable Modeling of Longitudinal Health Trajectories with LLMs

Healthcare systems face significant challenges in managing and interpreting vast, heterogeneous patient data for personalized care. Existing approaches often focus on narrow use cases with a limited feature space, overlooking the complex, longitudinal interactions needed for a holistic understanding of patient health. In this work, we propose a novel approach to patient pathway modeling by transforming diverse electronic health record (EHR) data into a structured representation and designing a holistic pathway prediction model, EHR2Path, optimized to predict future health trajectories. Further, we introduce a novel summary mechanism that embeds long-term temporal context into topic-specific summary tokens, improving performance over text-only models, while being much more token-efficient. EHR2Path demonstrates strong performance in both next time-step prediction and longitudinal simulation, outperforming competitive baselines. It enables detailed simulations of patient trajectories, inherently targeting diverse evaluation tasks, such as forecasting vital signs, lab test results, or length-of-stay, opening a path towards predictive and personalized healthcare.

EgoExOR: An Ego-Exo-Centric Operating Room Dataset for Surgical Activity Understanding

Operating rooms (ORs) demand precise coordination among surgeons, nurses, and equipment in a fast-paced, occlusion-heavy environment, necessitating advanced perception models to enhance safety and efficiency. Existing datasets either provide partial egocentric views or sparse exocentric multi-view context, but do not explore the comprehensive combination of both. We introduce EgoExOR, the first OR dataset and accompanying benchmark to fuse first-person and third-person perspectives. Spanning 94 minutes (84,553 frames at 15 FPS) of two emulated spine procedures, Ultrasound-Guided Needle Insertion and Minimally Invasive Spine Surgery, EgoExOR integrates egocentric data (RGB, gaze, hand tracking, audio) from wearable glasses, exocentric RGB and depth from RGB-D cameras, and ultrasound imagery. Its detailed scene graph annotations, covering 36 entities and 22 relations (568,235 triplets), enable robust modeling of clinical interactions, supporting tasks like action recognition and human-centric perception. We evaluate the surgical scene graph generation performance of two adapted state-of-the-art models and offer a new baseline that explicitly leverages EgoExOR's multimodal and multi-perspective signals. This new dataset and benchmark set a new foundation for OR perception, offering a rich, multimodal resource for next-generation clinical perception.